Wall clock time and date at job start Tue Mar 31 2020 07:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 C 1.53006 * 109.47328 * 175.47880 * 3 2 1 5 5 C 1.53001 * 109.46837 * 294.42271 * 4 3 2 6 6 N 1.46498 * 109.47224 * 295.47934 * 3 2 1 7 7 C 1.34956 * 126.03528 * 274.99844 * 6 3 2 8 8 C 1.35315 * 107.74389 * 180.20506 * 7 6 3 9 9 C 1.39872 * 107.92107 * 359.63774 * 8 7 6 10 10 C 1.50700 * 125.89779 * 180.13865 * 9 8 7 11 11 S 1.81398 * 109.47205 * 270.24113 * 10 9 8 12 12 C 1.81405 * 102.99916 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46936 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.46880 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47123 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99683 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00128 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00163 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00376 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47315 * 89.99546 * 19 17 15 21 21 H 1.48497 * 109.47284 * 209.99913 * 19 17 15 22 22 H 1.48498 * 109.46815 * 329.99634 * 19 17 15 23 23 N 1.30837 * 108.20232 * 0.36742 * 9 8 7 24 24 H 1.09002 * 109.47466 * 186.53496 * 1 2 3 25 25 H 1.09005 * 109.46917 * 306.53508 * 1 2 3 26 26 H 1.09000 * 109.47332 * 66.52755 * 1 2 3 27 27 H 1.09004 * 109.46722 * 239.99879 * 2 1 3 28 28 H 1.09000 * 109.47241 * 120.00346 * 2 1 3 29 29 H 1.09001 * 109.47438 * 55.47896 * 3 2 1 30 30 H 1.08999 * 109.47017 * 54.42206 * 4 3 2 31 31 H 1.09001 * 109.46787 * 174.42529 * 4 3 2 32 32 H 1.09007 * 109.47355 * 306.21611 * 5 4 3 33 33 H 1.09000 * 109.47210 * 66.21561 * 5 4 3 34 34 H 1.09001 * 109.47399 * 186.21028 * 5 4 3 35 35 H 1.07999 * 126.12458 * 359.94058 * 7 6 3 36 36 H 1.07999 * 126.03911 * 179.77258 * 8 7 6 37 37 H 1.08997 * 109.46737 * 30.24205 * 10 9 8 38 38 H 1.08999 * 109.46846 * 150.23819 * 10 9 8 39 39 H 1.09001 * 109.46966 * 300.00141 * 12 11 10 40 40 H 1.09001 * 109.47175 * 59.99576 * 12 11 10 41 41 H 1.09001 * 109.47473 * 299.99910 * 13 12 11 42 42 H 1.08995 * 109.47248 * 60.00719 * 13 12 11 43 43 H 1.09001 * 109.47113 * 300.00276 * 14 13 12 44 44 H 1.09003 * 109.46817 * 60.00475 * 14 13 12 45 45 H 0.96997 * 120.00727 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5659 1.4439 0.1137 5 6 3.9762 0.8826 1.4766 6 7 1.6427 2.1009 -1.2469 7 6 2.3099 2.0506 -2.4189 8 6 1.6204 2.7903 -3.3180 9 6 0.4888 3.3036 -2.6757 10 6 -0.5619 4.1820 -3.3045 11 16 -0.0916 5.9229 -3.1079 12 6 -1.4554 6.8075 -3.9131 13 6 -1.2049 8.3145 -3.8306 14 6 -2.3549 9.0606 -4.5103 15 6 -2.1079 10.5451 -4.4296 16 1 -1.2193 10.9189 -3.9426 17 6 -3.0162 11.4258 -4.9774 18 7 -4.0980 10.9706 -5.5708 19 14 -2.7097 13.2658 -4.8780 20 1 -1.9408 13.7047 -6.0702 21 1 -4.0096 13.9826 -4.8359 22 1 -1.9352 13.5729 -3.6488 23 7 0.5028 2.8936 -1.4333 24 1 -0.3634 -1.0210 0.1170 25 1 -0.3633 0.6118 0.8258 26 1 -0.3634 0.4093 -0.9426 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6121 1.9792 0.8467 30 1 3.9897 0.8245 -0.6768 31 1 3.9366 2.4641 0.0143 32 1 3.4642 1.4337 2.2656 33 1 3.7026 -0.1710 1.5331 34 1 5.0540 0.9852 1.6023 35 1 3.2315 1.5190 -2.6046 36 1 1.8941 2.9535 -4.3499 37 1 -0.6455 3.9458 -4.3653 38 1 -1.5209 4.0073 -2.8167 39 1 -1.5171 6.5057 -4.9586 40 1 -2.3918 6.5670 -3.4097 41 1 -1.1434 8.6160 -2.7849 42 1 -0.2685 8.5553 -4.3338 43 1 -2.4159 8.7591 -5.5559 44 1 -3.2916 8.8199 -4.0074 45 1 -4.7373 11.5902 -5.9559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269363667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:26 Heat of formation + Delta-G solvation = 23.616424 kcal Electronic energy + Delta-G solvation = -20523.368895 eV Core-core repulsion = 17473.941023 eV Total energy + Delta-G solvation = -3049.427873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.27019 -37.96389 -36.35493 -34.03974 -33.46758 -32.80954 -30.91367 -29.77475 -29.27831 -26.43082 -25.30943 -23.79672 -23.11038 -22.18917 -20.82049 -20.61350 -18.56342 -18.18856 -17.07649 -16.63450 -16.48665 -16.25802 -15.61040 -15.57542 -15.20103 -14.98160 -14.69785 -14.47023 -14.40547 -14.19271 -13.71046 -13.50351 -13.33081 -13.17200 -13.09323 -12.87340 -12.74579 -12.72497 -12.53569 -12.37085 -11.99478 -11.84223 -11.65969 -11.65208 -11.54962 -11.43895 -11.21884 -10.89612 -10.55919 -10.14265 -9.47501 -8.65381 -8.20773 -6.31768 0.33819 1.10959 1.40347 1.41784 1.51895 1.53151 1.61430 2.09433 2.41348 3.12290 3.34596 3.63719 3.77168 3.81459 3.97232 4.05557 4.08032 4.11933 4.23688 4.34433 4.41103 4.42335 4.56004 4.60413 4.64591 4.73697 4.81589 4.82922 4.92236 4.95961 4.98035 5.05384 5.09046 5.10276 5.13965 5.17793 5.30067 5.37284 5.49193 5.63176 5.68919 5.82502 6.18815 6.22833 6.74894 6.83568 7.37118 8.90914 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.033586 B = 0.002101 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.477915 B =13326.626696 C =13584.663937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.153 3.847 4 C -0.127 4.127 5 C -0.148 4.148 6 N -0.358 5.358 7 C 0.062 3.938 8 C -0.274 4.274 9 C 0.068 3.932 10 C 0.003 3.997 11 S -0.277 6.277 12 C -0.068 4.068 13 C -0.080 4.080 14 C 0.031 3.969 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.265 1.265 23 N -0.314 5.314 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.209 0.791 36 H 0.159 0.841 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.056 0.944 43 H -0.001 1.001 44 H -0.004 1.004 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.735 -27.552 10.872 34.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.053 3.947 4 C -0.166 4.166 5 C -0.205 4.205 6 N -0.141 5.141 7 C -0.084 4.084 8 C -0.305 4.305 9 C -0.097 4.097 10 C -0.147 4.147 11 S -0.050 6.050 12 C -0.216 4.216 13 C -0.119 4.119 14 C -0.008 4.008 15 C -0.583 4.583 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.790 3.210 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.190 1.190 23 N -0.138 5.138 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.226 0.774 36 H 0.177 0.823 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.018 0.982 44 H 0.015 0.985 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.914 -27.157 12.540 34.364 hybrid contribution -1.139 0.734 -1.545 2.055 sum 15.775 -26.424 10.995 32.680 Atomic orbital electron populations 1.21713 0.96221 1.01855 1.00932 1.22013 0.95920 0.93951 1.04659 1.21751 0.96704 0.93592 0.82689 1.21889 0.91119 1.02639 1.00955 1.21776 1.02310 1.01864 0.94597 1.49035 1.17160 1.37780 1.10123 1.22968 0.99762 1.00484 0.85192 1.21623 0.97921 1.08121 1.02803 1.21471 0.97340 0.98733 0.92160 1.21506 0.98316 0.90817 1.04030 1.87091 1.36209 1.03257 1.78456 1.23387 0.97633 0.97983 1.02603 1.21162 0.99440 0.90852 1.00457 1.18984 0.93048 0.94144 0.94603 1.21662 1.06984 0.92953 1.36730 0.92383 1.25972 0.94772 1.04321 0.94729 1.70085 1.11884 1.36543 1.38612 0.85433 0.77693 0.78905 0.78945 1.19616 1.20563 1.18976 1.77280 1.06134 1.12452 1.17928 0.91330 0.93237 0.95079 0.90615 0.87311 0.89344 0.89136 0.92037 0.92640 0.90681 0.91063 0.77431 0.82302 0.86585 0.89049 0.89554 0.90293 0.92981 0.92515 0.98239 0.98535 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.72 71.98 0.70 -1.54 16 2 C -0.13 -1.28 5.48 30.59 0.17 -1.12 16 3 C 0.15 2.07 2.79 44.99 0.13 2.19 16 4 C -0.13 -1.06 4.91 30.60 0.15 -0.91 16 5 C -0.15 -0.78 9.53 71.98 0.69 -0.10 16 6 N -0.36 -7.21 3.09 -327.49 -1.01 -8.22 16 7 C 0.06 1.06 10.61 83.54 0.89 1.95 16 8 C -0.27 -5.98 10.74 21.99 0.24 -5.75 16 9 C 0.07 1.84 6.48 43.10 0.28 2.12 16 10 C 0.00 0.07 6.50 71.24 0.46 0.53 16 11 S -0.28 -9.25 21.72 -56.49 -1.23 -10.48 16 12 C -0.07 -2.45 5.94 71.98 0.43 -2.02 16 13 C -0.08 -3.51 5.16 30.60 0.16 -3.36 16 14 C 0.03 1.68 4.97 29.85 0.15 1.82 16 15 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 19 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 N -0.31 -8.76 12.27 -47.38 -0.58 -9.34 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.03 0.63 7.62 -2.39 -0.02 0.61 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.11 0.58 6.52 -2.39 -0.02 0.57 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 0.45 7.45 -2.39 -0.02 0.43 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.36 8.14 -2.38 -0.02 0.35 16 33 H 0.07 0.21 6.79 -2.39 -0.02 0.19 16 34 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.21 1.71 7.42 -2.91 -0.02 1.69 16 36 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.08 2.78 8.14 -2.39 -0.02 2.77 16 41 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -71.22 380.65 5.54 -65.68 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.92 Total: 9.51 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 5.12 Total: -37.38 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.31 Total: -74.50 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -1.23 Total: -10.48 kcal Total: -71.22 5.54 -65.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269363667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.297 kcal (2) G-P(sol) polarization free energy of solvation -71.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds