Wall clock time and date at job start Tue Mar 31 2020 08:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 113.18590 * 2 1 4 4 C 1.55634 * 114.06221 * 132.61356 * 2 1 3 5 5 H 1.08999 * 114.05568 * 323.64823 * 4 2 1 6 6 N 1.46499 * 114.06008 * 191.47446 * 4 2 1 7 7 C 1.34777 * 120.00065 * 157.92686 * 6 4 2 8 8 O 1.21593 * 119.99923 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00128 * 180.02562 * 7 6 4 10 10 C 1.46498 * 119.99828 * 180.27942 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 C 1.50697 * 109.47491 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99965 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00490 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99545 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00173 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47330 * 89.99925 * 16 14 12 18 18 H 1.48495 * 109.47202 * 209.99886 * 16 14 12 19 19 H 1.48496 * 109.47402 * 329.99928 * 16 14 12 20 20 C 1.50566 * 84.46742 * 77.56007 * 4 2 1 21 21 H 1.08994 * 113.16359 * 282.01739 * 20 4 2 22 22 C 1.52041 * 123.96044 * 139.65395 * 20 4 2 23 23 C 1.54390 * 105.10444 * 203.08892 * 22 20 4 24 24 C 1.52407 * 112.06669 * 53.82836 * 23 22 20 25 25 O 1.45199 * 113.17035 * 310.08528 * 24 23 22 26 26 C 1.40854 * 109.75295 * 56.37278 * 25 24 23 27 27 H 1.09008 * 111.06511 * 54.58277 * 26 25 24 28 28 H 1.08998 * 109.47092 * 287.39366 * 1 2 3 29 29 H 1.09012 * 109.46890 * 47.38841 * 1 2 3 30 30 H 1.08997 * 109.47844 * 167.38856 * 1 2 3 31 31 H 1.08994 * 109.47170 * 192.60773 * 3 2 1 32 32 H 1.09004 * 109.46328 * 312.60796 * 3 2 1 33 33 H 1.08999 * 109.46801 * 72.60649 * 3 2 1 34 34 H 0.97000 * 120.00386 * 337.93054 * 6 4 2 35 35 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 37 37 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 38 38 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 39 39 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 40 40 H 0.97004 * 119.99855 * 180.02562 * 15 14 12 41 41 H 1.09000 * 110.30934 * 321.98764 * 22 20 4 42 42 H 1.09006 * 110.30830 * 84.04216 * 22 20 4 43 43 H 1.09001 * 108.96319 * 174.49299 * 23 22 20 44 44 H 1.09000 * 108.96250 * 293.16376 * 23 22 20 45 45 H 1.09000 * 108.79284 * 70.85824 * 24 23 22 46 46 H 1.08991 * 108.79481 * 189.09001 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1324 1.4065 0.0000 4 6 2.1645 -0.9622 1.0458 5 1 1.6137 -1.0239 1.9844 6 7 3.6051 -0.7737 1.2340 7 6 4.1962 -1.1891 2.3717 8 8 3.5338 -1.7209 3.2418 9 7 5.5214 -1.0153 2.5451 10 6 6.1649 -1.4724 3.7792 11 6 7.6620 -1.1630 3.7186 12 6 8.3239 -1.6327 4.9883 13 1 7.7355 -2.1043 5.7615 14 6 9.6807 -1.4604 5.1631 15 7 10.3972 -0.8865 4.2214 16 14 10.5009 -2.0419 6.7373 17 1 10.9524 -3.4468 6.5705 18 1 11.6715 -1.1778 7.0340 19 1 9.5310 -1.9637 7.8591 20 6 1.8105 -2.0385 0.0543 21 1 0.7551 -2.3098 0.0746 22 6 2.7107 -3.2186 -0.2757 23 6 2.2643 -3.6852 -1.6781 24 6 2.2777 -2.5469 -2.6914 25 8 1.5848 -1.3590 -2.2254 26 6 2.1416 -0.9314 -1.0043 27 1 3.2179 -0.7844 -1.0947 28 1 -0.3633 0.3072 0.9807 29 1 -0.3633 0.6958 -0.7564 30 1 -0.3635 -1.0028 -0.2244 31 1 3.1972 1.3456 -0.2243 32 1 1.6358 2.0143 -0.7564 33 1 1.9930 1.8613 0.9807 34 1 4.1336 -0.3498 0.5398 35 1 6.0498 -0.5914 1.8508 36 1 5.7218 -0.9581 4.6320 37 1 6.0201 -2.5473 3.8879 38 1 8.1051 -1.6774 2.8658 39 1 7.8069 -0.0882 3.6099 40 1 11.3518 -0.7656 4.3441 41 1 3.7542 -2.9044 -0.2958 42 1 2.5707 -4.0167 0.4534 43 1 2.9367 -4.4719 -2.0203 44 1 1.2540 -4.0888 -1.6121 45 1 3.3125 -2.2824 -2.9088 46 1 1.8046 -2.8902 -3.6114 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343761663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:16 Heat of formation + Delta-G solvation = -43.170621 kcal Electronic energy + Delta-G solvation = -24826.246219 eV Core-core repulsion = 21331.169372 eV Total energy + Delta-G solvation = -3495.076847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97898 -39.21535 -37.17075 -34.81195 -33.84506 -33.24259 -32.64915 -30.43749 -29.39484 -27.72207 -26.62362 -24.88476 -24.23141 -22.36934 -21.30565 -20.75746 -20.14860 -19.08798 -18.05995 -16.54833 -16.22796 -16.15535 -15.76196 -15.29331 -15.01363 -14.59360 -14.51190 -14.34032 -14.04239 -13.75652 -13.42474 -13.35360 -13.13445 -12.55267 -12.38989 -12.35371 -12.27740 -12.18080 -11.79526 -11.32037 -11.19154 -11.13910 -11.04080 -10.79336 -10.67774 -10.62485 -10.33186 -10.28736 -9.94159 -9.56492 -9.26737 -9.16899 -8.94084 -8.49004 -8.26345 -6.09546 -4.12108 2.91891 3.22416 3.29540 3.35747 3.40350 3.53444 3.94414 4.36793 4.38933 4.42611 4.60253 4.64629 4.70642 4.76882 4.89569 5.02915 5.13609 5.15574 5.27699 5.35475 5.45015 5.48589 5.51522 5.57986 5.62708 5.68662 5.72094 5.78059 5.85308 5.89465 6.05643 6.10684 6.16533 6.30060 6.39415 6.63130 6.77308 6.86230 6.98740 7.20568 7.56229 7.62814 7.89671 8.25271 8.41363 8.92513 8.98943 9.52692 11.02127 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.002939 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.972263 B = 9523.439221 C = 9881.514041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.137 4.137 4 C 0.168 3.832 5 H 0.109 0.891 6 N -0.732 5.732 7 C 0.702 3.298 8 O -0.594 6.594 9 N -0.738 5.738 10 C 0.141 3.859 11 C 0.013 3.987 12 C -0.521 4.521 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.175 4.175 21 H 0.109 0.891 22 C -0.101 4.101 23 C -0.150 4.150 24 C 0.061 3.939 25 O -0.362 6.362 26 C 0.052 3.948 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.392 0.608 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.021 0.979 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.257 0.805 -15.206 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 C -0.195 4.195 4 C 0.060 3.940 5 H 0.127 0.873 6 N -0.388 5.388 7 C 0.402 3.598 8 O -0.472 6.472 9 N -0.392 5.392 10 C 0.018 3.982 11 C -0.024 4.024 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.195 4.195 21 H 0.127 0.873 22 C -0.139 4.139 23 C -0.188 4.188 24 C -0.015 4.015 25 O -0.281 6.281 26 C -0.007 4.007 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.227 0.773 35 H 0.225 0.775 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.799 0.438 -14.504 23.748 hybrid contribution 1.388 -0.094 0.119 1.396 sum -17.411 0.344 -14.385 22.587 Atomic orbital electron populations 1.21582 0.91394 1.02907 1.02267 1.22088 0.97079 0.94373 0.93005 1.21712 1.00432 0.94802 1.02509 1.21133 0.81200 0.93735 0.97886 0.87291 1.44802 1.07921 1.66527 1.19571 1.16004 0.82525 0.79307 0.81962 1.90892 1.63670 1.49473 1.43184 1.45535 1.06129 1.64740 1.22748 1.21590 0.95129 0.98419 0.83063 1.19321 0.87504 0.97540 0.98075 1.21053 0.93091 1.39455 1.02332 0.92218 1.24994 0.97413 0.95079 0.96817 1.69958 1.06885 1.43226 1.33293 0.86510 0.78993 0.78605 0.83440 1.20571 1.21185 1.19698 1.23916 1.01235 0.95562 0.98784 0.87308 1.21394 0.99129 0.97861 0.95479 1.22114 1.02508 0.98281 0.95911 1.22696 0.96966 0.85148 0.96669 1.88107 1.58502 1.42762 1.38695 1.23591 0.96371 0.96996 0.83695 0.90819 0.91829 0.91691 0.91506 0.92479 0.92073 0.91600 0.77257 0.77473 0.92748 0.92799 0.96026 0.95974 0.92872 0.91517 0.91327 0.90767 0.91419 0.93228 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.02 37.16 0.34 -0.68 16 2 C -0.06 -0.59 1.44 -157.23 -0.23 -0.82 16 3 C -0.14 -1.17 8.89 37.16 0.33 -0.84 16 4 C 0.17 1.92 3.89 -71.40 -0.28 1.64 16 5 H 0.11 1.45 7.52 -51.93 -0.39 1.06 16 6 N -0.73 -9.10 4.16 -62.13 -0.26 -9.36 16 7 C 0.70 12.00 8.57 -86.92 -0.74 11.25 16 8 O -0.59 -12.56 15.97 5.28 0.08 -12.48 16 9 N -0.74 -12.85 5.56 -65.23 -0.36 -13.21 16 10 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 11 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 12 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 16 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.17 -1.84 3.17 -92.95 -0.29 -2.13 16 21 H 0.11 1.10 6.23 -51.93 -0.32 0.78 16 22 C -0.10 -1.08 6.00 -26.49 -0.16 -1.24 16 23 C -0.15 -1.28 5.95 -26.31 -0.16 -1.44 16 24 C 0.06 0.52 6.69 36.85 0.25 0.77 16 25 O -0.36 -3.83 10.99 -34.62 -0.38 -4.21 16 26 C 0.05 0.51 3.01 -29.86 -0.09 0.42 16 27 H 0.07 0.72 6.27 -51.92 -0.33 0.40 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.07 0.55 6.19 -51.93 -0.32 0.23 16 31 H 0.06 0.47 6.89 -51.93 -0.36 0.11 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.39 3.99 6.39 -40.82 -0.26 3.73 16 35 H 0.39 5.86 8.49 -40.82 -0.35 5.52 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.07 0.77 7.72 -51.93 -0.40 0.37 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -31.95 360.28 -9.15 -41.10 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.76 Total: 4.80 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.61 Total: -3.09 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.12 Total: -47.91 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.30 Total: -16.69 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.95 -9.15 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343761663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.074 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds