Wall clock time and date at job start Tue Mar 31 2020 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48498 * 109.46711 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47139 * 300.00145 * 3 2 1 6 6 H 1.48496 * 109.46826 * 60.00126 * 3 2 1 7 7 C 1.37881 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00553 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99726 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99732 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47000 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47222 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47391 * 180.02562 * 16 15 14 18 18 C 1.47196 * 119.78556 * 270.00023 * 17 16 15 19 19 C 1.52982 * 108.66360 * 108.04035 * 18 17 16 20 20 C 1.51776 * 110.88512 * 86.47127 * 19 18 17 21 21 C 1.51797 * 113.80884 * 292.99518 * 20 19 18 22 22 C 1.53059 * 110.74154 * 66.80523 * 21 20 19 23 23 C 1.33371 * 119.78951 * 89.99923 * 17 16 15 24 24 O 1.21273 * 119.88937 * 0.55603 * 23 17 16 25 25 H 0.96999 * 120.00105 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47495 * 59.99912 * 9 7 2 27 27 H 1.09000 * 109.47199 * 299.99760 * 9 7 2 28 28 H 1.08997 * 109.47131 * 59.99613 * 10 9 7 29 29 H 1.09000 * 109.46887 * 299.99875 * 10 9 7 30 30 H 0.96991 * 120.00175 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.47056 * 60.00804 * 14 13 11 32 32 H 1.08992 * 109.47632 * 300.00632 * 14 13 11 33 33 H 1.09005 * 109.46648 * 60.00446 * 15 14 13 34 34 H 1.09000 * 109.47214 * 300.00420 * 15 14 13 35 35 H 1.08997 * 109.47378 * 60.00165 * 16 15 14 36 36 H 1.09000 * 109.47088 * 300.00153 * 16 15 14 37 37 H 1.09000 * 109.60617 * 348.28608 * 18 17 16 38 38 H 1.08995 * 109.60580 * 227.79508 * 18 17 16 39 39 H 1.09000 * 109.19832 * 326.10366 * 19 18 17 40 40 H 1.09005 * 109.15447 * 206.80667 * 19 18 17 41 41 H 1.08997 * 108.61568 * 171.87622 * 20 19 18 42 42 H 1.08996 * 108.61753 * 54.11401 * 20 19 18 43 43 H 1.09004 * 109.21915 * 306.48090 * 21 20 19 44 44 H 1.08994 * 109.22330 * 187.13540 * 21 20 19 45 45 H 1.09003 * 109.63386 * 155.38914 * 22 21 20 46 46 H 1.08999 * 109.79996 * 34.88481 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4917 -4.9672 0.0025 12 8 0.2789 -4.9672 0.0015 13 7 2.1656 -6.1344 0.0031 14 6 1.4330 -7.4031 0.0043 15 6 2.4273 -8.5661 0.0054 16 6 1.6623 -9.8910 0.0060 17 7 2.6142 -11.0046 0.0078 18 6 3.0903 -11.5615 -1.2689 19 6 4.5492 -11.1472 -1.4700 20 6 5.4887 -12.1298 -0.7952 21 6 5.3942 -12.1263 0.7198 22 6 4.0328 -12.6539 1.1791 23 6 3.0439 -11.5072 1.1660 24 8 2.6375 -11.0476 2.2121 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8712 -3.6039 0.8922 29 1 2.8725 -3.6048 -0.8877 30 1 3.1355 -6.1344 0.0035 31 1 0.8061 -7.4615 -0.8856 32 1 0.8066 -7.4602 0.8944 33 1 3.0538 -8.5075 0.8955 34 1 3.0540 -8.5092 -0.8845 35 1 1.0360 -9.9494 -0.8841 36 1 1.0353 -9.9482 0.8958 37 1 2.4836 -11.1726 -2.0866 38 1 3.0193 -12.6488 -1.2427 39 1 4.7020 -10.1553 -1.0446 40 1 4.7685 -11.1169 -2.5374 41 1 6.5118 -11.8850 -1.0806 42 1 5.2608 -13.1328 -1.1558 43 1 5.5264 -11.1079 1.0852 44 1 6.1813 -12.7590 1.1299 45 1 4.1168 -13.0533 2.1898 46 1 3.6932 -13.4381 0.5025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359827708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:40 Heat of formation + Delta-G solvation = -103.367470 kcal Electronic energy + Delta-G solvation = -23546.620862 eV Core-core repulsion = 20048.933683 eV Total energy + Delta-G solvation = -3497.687178 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80108 -39.08830 -37.10423 -36.15472 -34.53650 -33.41204 -31.79016 -31.45903 -30.71642 -27.71282 -26.06755 -24.96935 -24.11657 -22.06644 -21.40989 -21.06871 -19.57752 -19.16149 -17.65361 -16.99446 -16.82662 -15.84073 -15.61788 -15.51044 -15.38077 -14.68667 -14.52347 -14.40805 -14.29657 -14.06941 -13.83475 -13.36916 -13.02080 -12.88758 -12.70756 -12.39080 -12.13420 -12.05358 -11.89402 -11.75446 -11.32437 -11.25830 -11.17018 -11.12157 -10.95413 -10.90022 -10.56013 -9.97625 -9.92867 -9.63567 -9.22219 -9.08858 -8.92130 -8.73712 -8.29849 -5.93824 -3.98049 2.34688 2.60304 3.30986 3.34151 3.40860 3.44283 3.62139 4.01645 4.21636 4.26436 4.32764 4.49516 4.67480 4.68791 4.77944 4.85626 4.91745 4.96101 4.97941 5.15152 5.18446 5.28764 5.41045 5.41796 5.43313 5.47571 5.55939 5.58462 5.64251 5.70301 5.78304 5.93591 6.03149 6.16270 6.26703 6.28517 6.76849 6.93247 7.04627 7.77437 7.88531 7.89697 7.93481 8.10167 8.41607 8.83141 9.10985 9.65319 11.17208 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030024 B = 0.002190 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.373401 B =12781.483957 C =13086.081119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.535 6.535 13 N -0.745 5.745 14 C 0.122 3.878 15 C -0.144 4.144 16 C 0.115 3.885 17 N -0.607 5.607 18 C 0.109 3.891 19 C -0.143 4.143 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.138 4.138 23 C 0.513 3.487 24 O -0.545 6.545 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.396 0.604 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.014 -30.434 -4.172 32.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.411 6.411 13 N -0.399 5.399 14 C -0.002 4.002 15 C -0.182 4.182 16 C -0.009 4.009 17 N -0.340 5.340 18 C -0.013 4.013 19 C -0.181 4.181 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.178 4.178 23 C 0.301 3.699 24 O -0.422 6.422 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.230 0.770 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.731 -30.077 -3.622 32.138 hybrid contribution 0.995 0.881 -0.115 1.335 sum 11.726 -29.195 -3.737 31.683 Atomic orbital electron populations 1.70013 1.06048 1.26440 1.50347 1.25039 0.94837 0.99250 0.95363 0.86529 0.79987 0.83842 0.77565 1.19769 1.21032 1.21024 1.21266 0.92956 0.91023 1.51159 0.92567 1.18905 0.93206 0.89405 0.98629 1.21859 1.00701 0.92000 1.02428 1.21561 0.88655 0.85664 0.74407 1.90667 1.14493 1.87671 1.48224 1.46179 1.09983 1.05609 1.78106 1.21111 0.94384 0.82493 1.02251 1.22135 0.99108 0.93955 1.03048 1.21444 0.91078 0.84456 1.03873 1.47878 1.45287 1.34472 1.06362 1.21878 0.95082 0.98984 0.85390 1.21844 0.94431 1.00389 1.01472 1.21174 1.00115 0.99792 0.94866 1.21224 0.95624 1.02295 0.95997 1.22008 0.94784 0.96545 1.04477 1.20585 0.81683 0.84403 0.83194 1.90747 1.57755 1.62038 1.31643 0.93021 0.95824 0.95814 0.90283 0.90304 0.77030 0.91805 0.91679 0.90927 0.91214 0.90036 0.89316 0.89397 0.90508 0.90884 0.90429 0.91559 0.91817 0.91458 0.90618 0.88568 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.82 13.29 55.43 0.74 -27.09 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.71 5.64 -27.88 -0.16 -2.86 16 11 C 0.51 10.12 7.83 -10.98 -0.09 10.04 16 12 O -0.54 -13.05 15.98 5.56 0.09 -12.96 16 13 N -0.74 -10.80 5.56 -60.29 -0.33 -11.13 16 14 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 15 C -0.14 -1.33 5.65 -26.73 -0.15 -1.48 16 16 C 0.11 0.98 5.39 -4.04 -0.02 0.96 16 17 N -0.61 -4.63 2.45 -173.24 -0.43 -5.06 16 18 C 0.11 0.48 5.91 -3.67 -0.02 0.46 16 19 C -0.14 -0.59 5.73 -27.36 -0.16 -0.74 16 20 C -0.12 -0.45 5.27 -27.96 -0.15 -0.60 16 21 C -0.11 -0.57 5.67 -27.31 -0.15 -0.73 16 22 C -0.14 -0.85 5.56 -27.50 -0.15 -1.00 16 23 C 0.51 4.99 6.79 -11.25 -0.08 4.92 16 24 O -0.54 -7.86 16.59 5.56 0.09 -7.77 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.40 4.55 8.47 -40.82 -0.35 4.20 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.55 7.90 -51.93 -0.41 0.14 16 35 H 0.08 0.54 7.85 -51.93 -0.41 0.13 16 36 H 0.09 0.94 7.37 -51.93 -0.38 0.56 16 37 H 0.09 0.30 7.77 -51.93 -0.40 -0.11 16 38 H 0.08 0.24 6.71 -51.93 -0.35 -0.11 16 39 H 0.07 0.42 7.80 -51.93 -0.41 0.01 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.06 0.17 7.89 -51.93 -0.41 -0.24 16 43 H 0.07 0.45 7.86 -51.93 -0.41 0.05 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.10 0.61 8.13 -51.93 -0.42 0.19 16 46 H 0.09 0.36 6.79 -51.93 -0.35 0.01 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -37.42 370.62 -9.02 -46.44 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.06 Total: -2.37 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.68 Total: -2.56 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.02 Total: -43.27 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.18 Total: -20.73 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.42 -9.02 -46.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359827708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.929 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds