Wall clock time and date at job start Tue Mar 31 2020 07:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99738 * 2 1 4 4 H 1.48505 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47162 * 299.99610 * 3 2 1 6 6 H 1.48500 * 109.47188 * 59.99676 * 3 2 1 7 7 C 1.37877 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00279 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47173 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47243 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46960 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99643 * 179.97438 * 12 11 10 14 14 O 1.21591 * 119.99959 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00169 * 180.02562 * 13 12 11 16 16 C 1.47433 * 125.64623 * 354.77759 * 15 13 12 17 17 C 1.54911 * 104.83166 * 156.13899 * 16 15 13 18 18 C 1.55157 * 101.57981 * 37.01035 * 17 16 15 19 19 C 1.47026 * 125.65355 * 175.09311 * 15 13 12 20 20 H 1.09001 * 109.87642 * 300.36316 * 19 15 13 21 21 C 1.52999 * 109.88177 * 61.37092 * 19 15 13 22 22 H 1.09007 * 110.32958 * 305.55573 * 21 19 15 23 23 C 1.54479 * 110.37234 * 183.30550 * 21 19 15 24 24 C 1.54512 * 104.06101 * 217.19154 * 23 21 19 25 25 C 1.54474 * 104.06420 * 359.97438 * 24 23 21 26 26 O 1.44424 * 110.37148 * 67.80265 * 21 19 15 27 27 H 0.96996 * 120.00225 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46786 * 59.99783 * 9 7 2 29 29 H 1.08999 * 109.47016 * 300.00193 * 9 7 2 30 30 H 1.08996 * 109.47192 * 59.99729 * 10 9 7 31 31 H 1.09008 * 109.46608 * 299.99986 * 10 9 7 32 32 H 1.09004 * 109.46729 * 59.99765 * 11 10 9 33 33 H 1.08999 * 109.46868 * 299.99981 * 11 10 9 34 34 H 0.96997 * 120.00029 * 0.02562 * 12 11 10 35 35 H 1.09003 * 110.36674 * 274.98139 * 16 15 13 36 36 H 1.09003 * 110.36231 * 37.30112 * 16 15 13 37 37 H 1.09001 * 111.00440 * 278.93906 * 17 16 15 38 38 H 1.08995 * 111.03483 * 155.09777 * 17 16 15 39 39 H 1.08999 * 110.72161 * 206.13171 * 18 17 16 40 40 H 1.09003 * 110.71775 * 82.86228 * 18 17 16 41 41 H 1.08999 * 110.50876 * 335.83383 * 23 21 19 42 42 H 1.08996 * 110.51204 * 98.54738 * 23 21 19 43 43 H 1.09002 * 110.50948 * 118.64372 * 24 23 21 44 44 H 1.09000 * 110.50838 * 241.21759 * 24 23 21 45 45 H 1.09001 * 110.37311 * 142.80890 * 25 24 23 46 46 H 1.09001 * 110.37368 * 265.03635 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0018 13 6 1.9834 -7.3712 0.0019 14 8 0.7880 -7.5934 0.0010 15 7 2.8592 -8.3956 0.0030 16 6 4.3245 -8.2734 -0.1049 17 6 4.8791 -9.5668 0.5426 18 6 3.8327 -10.6173 0.0855 19 6 2.5113 -9.8204 0.1054 20 1 1.9781 -10.0056 1.0379 21 6 1.6388 -10.2297 -1.0828 22 1 0.7677 -9.5783 -1.1552 23 6 1.1980 -11.7037 -0.9439 24 6 1.2305 -12.2433 -2.3913 25 6 1.6864 -11.0314 -3.2336 26 8 2.4034 -10.1845 -2.3072 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8714 -3.6038 0.8922 31 1 2.8728 -3.6046 -0.8878 32 1 0.8548 -5.0449 -0.8895 33 1 0.8529 -5.0447 0.8905 34 1 3.3863 -5.9232 0.0029 35 1 4.6242 -8.2142 -1.1513 36 1 4.6732 -7.3964 0.4406 37 1 4.8989 -9.4823 1.6291 38 1 5.8686 -9.8060 0.1532 39 1 3.7911 -11.4506 0.7868 40 1 4.0551 -10.9701 -0.9216 41 1 1.8981 -12.2540 -0.3153 42 1 0.1888 -11.7638 -0.5365 43 1 1.9467 -13.0605 -2.4783 44 1 0.2378 -12.5724 -2.6986 45 1 2.3452 -11.3554 -4.0393 46 1 0.8226 -10.5047 -3.6394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375225607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:09 Heat of formation + Delta-G solvation = -89.373416 kcal Electronic energy + Delta-G solvation = -24379.606032 eV Core-core repulsion = 20882.525681 eV Total energy + Delta-G solvation = -3497.080351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65336 -39.16638 -37.36614 -35.27884 -33.33151 -32.39263 -31.84944 -31.09830 -30.53564 -27.16083 -26.60740 -24.10824 -23.01190 -22.37430 -21.62388 -20.71460 -20.55676 -19.34922 -17.91637 -16.74842 -16.48285 -16.31592 -15.92606 -15.47312 -15.08192 -14.84025 -14.42713 -14.11545 -14.03952 -13.95713 -13.34427 -13.28106 -13.07394 -12.50926 -12.26582 -12.00378 -11.98221 -11.74976 -11.66801 -11.52692 -11.42888 -11.16806 -11.00335 -10.89722 -10.74414 -10.67516 -10.53988 -10.09862 -9.82520 -9.72504 -9.39458 -9.08165 -8.84584 -8.38319 -8.34996 -5.99523 -4.02363 2.70679 3.31507 3.38872 3.40003 3.42568 3.73233 4.08378 4.28397 4.41651 4.45078 4.48469 4.53780 4.70240 4.73943 4.91804 5.10517 5.13487 5.17201 5.36294 5.37242 5.42253 5.45198 5.53883 5.57391 5.62467 5.63902 5.71723 5.73917 5.75876 5.86587 5.88619 6.03546 6.23552 6.29471 6.60514 6.67169 6.68723 6.90746 7.06985 7.21180 7.67162 7.80165 7.99836 8.17488 8.40965 8.82209 9.04622 9.61671 11.11869 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.002639 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.492589 B =10609.148066 C =11092.872187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.739 5.739 13 C 0.721 3.279 14 O -0.592 6.592 15 N -0.633 5.633 16 C 0.102 3.898 17 C -0.130 4.130 18 C -0.126 4.126 19 C 0.166 3.834 20 H 0.084 0.916 21 C 0.060 3.940 22 H 0.089 0.911 23 C -0.149 4.149 24 C -0.153 4.153 25 C 0.043 3.957 26 O -0.364 6.364 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.824 -27.201 -1.694 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.394 5.394 13 C 0.423 3.577 14 O -0.471 6.471 15 N -0.371 5.371 16 C -0.021 4.021 17 C -0.168 4.168 18 C -0.164 4.164 19 C 0.061 3.939 20 H 0.101 0.899 21 C 0.002 3.998 22 H 0.107 0.893 23 C -0.187 4.187 24 C -0.191 4.191 25 C -0.034 4.034 26 O -0.283 6.283 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.227 0.773 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.906 -27.004 -1.725 28.190 hybrid contribution 0.634 0.961 -0.044 1.151 sum 8.539 -26.044 -1.768 27.465 Atomic orbital electron populations 1.69976 1.06052 1.26541 1.50739 1.25034 0.94853 0.99295 0.95335 0.86532 0.80049 0.83794 0.77580 1.19769 1.21010 1.21018 1.21247 0.93022 0.90940 1.50677 0.92608 1.19030 0.93860 0.90811 0.97683 1.21884 0.99777 0.93336 1.00787 1.21504 0.91303 0.84143 1.01814 1.45401 1.10472 1.04271 1.79217 1.15492 0.84292 0.80137 0.77768 1.90882 1.13770 1.83785 1.58650 1.47526 1.06190 1.04994 1.78424 1.22239 0.80429 0.98583 1.00838 1.22726 0.98832 0.94344 1.00911 1.22658 0.93163 0.97410 1.03186 1.21420 0.95855 0.80034 0.96561 0.89857 1.23510 0.95033 0.95813 0.85472 0.89324 1.22962 1.02549 0.95898 0.97321 1.22908 1.02216 0.98805 0.95176 1.23382 0.96745 0.90141 0.93090 1.89150 1.48045 1.68642 1.22447 0.93001 0.96239 0.96247 0.92812 0.92802 0.92014 0.91989 0.77328 0.91267 0.91043 0.90677 0.89867 0.90351 0.89230 0.90525 0.90405 0.90812 0.90667 0.89355 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 11 C 0.14 2.55 5.67 -4.04 -0.02 2.53 16 12 N -0.74 -11.89 5.52 -65.23 -0.36 -12.25 16 13 C 0.72 12.20 8.30 -86.92 -0.72 11.48 16 14 O -0.59 -12.12 15.14 5.29 0.08 -12.04 16 15 N -0.63 -8.25 3.06 -168.68 -0.52 -8.77 16 16 C 0.10 0.99 6.68 -2.52 -0.02 0.97 16 17 C -0.13 -0.93 7.09 -24.58 -0.17 -1.11 16 18 C -0.13 -0.98 5.36 -24.90 -0.13 -1.11 16 19 C 0.17 1.83 2.78 -66.95 -0.19 1.64 16 20 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 21 C 0.06 0.70 2.99 -25.96 -0.08 0.63 16 22 H 0.09 1.35 6.59 -51.93 -0.34 1.00 16 23 C -0.15 -1.24 6.49 -25.16 -0.16 -1.40 16 24 C -0.15 -1.12 7.09 -25.16 -0.18 -1.29 16 25 C 0.04 0.40 7.63 37.93 0.29 0.69 16 26 O -0.36 -4.41 10.07 -35.23 -0.35 -4.77 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.39 5.30 6.87 -40.82 -0.28 5.01 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.62 7.12 -51.93 -0.37 0.25 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.09 0.75 6.87 -51.93 -0.36 0.39 16 41 H 0.08 0.53 7.06 -51.93 -0.37 0.16 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -33.85 363.62 -10.05 -43.90 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.02 Total: 0.77 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.08 Total: -2.61 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.14 Total: -47.42 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.27 Total: -16.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.85 -10.05 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375225607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.475 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds