Wall clock time and date at job start Tue Mar 31 2020 08:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99803 * 2 1 4 4 C 1.53001 * 109.46808 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47208 * 65.00275 * 4 3 2 6 6 C 1.36928 * 120.00314 * 90.00061 * 5 4 3 7 7 H 1.07997 * 119.99894 * 329.41713 * 6 5 4 8 8 C 1.38815 * 120.00156 * 149.69525 * 6 5 4 9 9 N 1.31621 * 119.99935 * 13.73443 * 8 6 5 10 10 Si 1.86804 * 119.99946 * 193.73507 * 8 6 5 11 11 H 1.48501 * 109.47021 * 89.99899 * 10 8 6 12 12 H 1.48497 * 109.46985 * 209.99613 * 10 8 6 13 13 H 1.48493 * 109.47247 * 330.00308 * 10 8 6 14 14 C 1.46508 * 119.99660 * 269.99789 * 5 4 3 15 15 N 1.46502 * 109.47165 * 284.94328 * 14 5 4 16 16 C 1.33835 * 133.17958 * 254.04436 * 15 14 5 17 17 O 1.21277 * 133.24334 * 359.96713 * 16 15 14 18 18 C 1.49983 * 93.51611 * 179.97438 * 16 15 14 19 19 C 1.52996 * 113.96652 * 113.98244 * 18 16 15 20 20 C 1.53000 * 113.96621 * 246.02188 * 18 16 15 21 21 C 1.45728 * 133.17158 * 73.69507 * 15 14 5 22 22 H 1.08994 * 113.47095 * 294.80840 * 21 15 14 23 23 C 1.53006 * 113.47005 * 65.26287 * 21 15 14 24 24 C 1.52998 * 117.50123 * 3.32346 * 23 21 15 25 25 C 1.52996 * 117.49616 * 294.66249 * 23 21 15 26 26 H 1.09006 * 109.47122 * 60.00454 * 1 2 3 27 27 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47423 * 300.00294 * 1 2 3 29 29 H 1.09000 * 109.47408 * 60.00267 * 3 2 1 30 30 H 1.09001 * 109.47500 * 299.99738 * 3 2 1 31 31 H 1.09003 * 109.47201 * 304.99717 * 4 3 2 32 32 H 1.08999 * 109.47120 * 185.00056 * 4 3 2 33 33 H 0.97000 * 119.99871 * 174.26956 * 9 8 6 34 34 H 1.09002 * 109.46870 * 44.94661 * 14 5 4 35 35 H 1.08998 * 109.47050 * 164.94512 * 14 5 4 36 36 H 1.09004 * 109.46762 * 79.50641 * 19 18 16 37 37 H 1.09006 * 109.46988 * 199.50186 * 19 18 16 38 38 H 1.08994 * 109.47167 * 319.50490 * 19 18 16 39 39 H 1.09001 * 109.47653 * 40.49093 * 20 18 16 40 40 H 1.09001 * 109.47368 * 160.49900 * 20 18 16 41 41 H 1.09006 * 109.46674 * 280.49648 * 20 18 16 42 42 H 1.08994 * 115.54601 * 148.99891 * 23 21 15 43 43 H 1.08998 * 117.49449 * 0.02562 * 24 23 21 44 44 H 1.08992 * 117.49639 * 145.01881 * 24 23 21 45 45 H 1.09005 * 117.49739 * 214.98126 * 25 23 21 46 46 H 1.09003 * 117.50392 * 0.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2680 1.3452 -2.3371 7 1 3.7493 2.2810 -2.4839 8 6 5.2259 0.9316 -3.2526 9 7 5.6578 -0.3117 -3.2369 10 14 5.9021 2.1395 -4.5069 11 1 7.0942 2.8227 -3.9435 12 1 6.2877 1.4082 -5.7405 13 1 4.8622 3.1478 -4.8337 14 6 4.1063 -0.8926 -1.3403 15 7 5.3127 -1.3202 -0.6276 16 6 6.5131 -1.7499 -1.0348 17 8 7.0039 -1.9297 -2.1291 18 6 7.0265 -1.9269 0.3633 19 6 7.3089 -3.3821 0.7420 20 6 8.1668 -0.9757 0.7317 21 6 5.6502 -1.4282 0.7860 22 1 5.6755 -0.4679 1.3008 23 6 4.8239 -2.4785 1.5311 24 6 3.8368 -3.3124 0.7120 25 6 3.3200 -2.2305 1.6636 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8507 0.5685 0.8427 32 1 3.9784 2.1765 0.0902 33 1 6.2639 -0.6233 -3.9271 34 1 3.2322 -1.3634 -0.8902 35 1 4.1790 -1.1873 -2.3871 36 1 8.2694 -3.6860 0.3256 37 1 7.3375 -3.4760 1.8276 38 1 6.5213 -4.0209 0.3426 39 1 7.9598 0.0144 0.3253 40 1 8.2513 -0.9127 1.8166 41 1 9.1018 -1.3510 0.3156 42 1 5.3283 -2.9696 2.3633 43 1 3.7763 -3.1130 -0.3579 44 1 3.6915 -4.3520 1.0054 45 1 2.8348 -2.5589 2.5828 46 1 2.9191 -1.3193 1.2196 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840152607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:39 Heat of formation + Delta-G solvation = 19.498042 kcal Electronic energy + Delta-G solvation = -26927.503559 eV Core-core repulsion = 23435.144229 eV Total energy + Delta-G solvation = -3492.359330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69641 -37.48087 -36.38378 -35.30246 -34.56723 -31.97236 -31.50456 -28.60862 -27.14954 -26.73119 -25.71984 -24.86402 -23.21511 -21.87551 -21.47301 -20.32120 -19.63038 -17.00906 -16.49733 -16.27453 -15.79917 -15.50804 -15.29718 -14.99126 -14.56814 -14.30031 -14.19704 -13.38124 -13.26150 -13.11756 -13.03457 -12.64899 -12.08497 -11.79255 -11.70044 -11.57416 -11.53888 -11.39937 -11.16886 -10.99820 -10.88205 -10.82783 -10.70641 -10.54084 -10.42181 -10.12278 -9.98274 -9.89412 -9.64442 -9.38659 -9.10354 -8.63762 -8.13601 -7.42938 -6.68900 -5.57741 -3.20429 3.43504 3.49924 3.53093 3.96774 4.22156 4.28719 4.41477 4.55861 4.89935 5.05837 5.27848 5.41042 5.43724 5.49470 5.50302 5.52120 5.57437 5.65515 5.73797 5.89322 5.90742 5.95051 5.96421 6.09281 6.10016 6.12056 6.13011 6.22548 6.29625 6.30651 6.38877 6.47711 6.50521 6.62904 6.69736 6.79511 6.83029 6.88853 7.54909 7.72236 7.87788 8.19831 8.39111 8.59273 9.30034 9.81932 9.88229 10.40223 11.37015 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.010637 B = 0.009549 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.604837 B = 2931.591200 C = 4896.458041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.376 6.376 3 C 0.042 3.958 4 C 0.142 3.858 5 N -0.577 5.577 6 C -0.292 4.292 7 H 0.066 0.934 8 C 0.018 3.982 9 N -0.857 5.857 10 Si 0.895 3.105 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.284 1.284 14 C 0.376 3.624 15 N -0.593 5.593 16 C 0.544 3.456 17 O -0.491 6.491 18 C -0.138 4.138 19 C -0.114 4.114 20 C -0.118 4.118 21 C 0.155 3.845 22 H 0.078 0.922 23 C -0.156 4.156 24 C -0.173 4.173 25 C -0.180 4.180 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.268 0.732 34 H 0.039 0.961 35 H 0.128 0.872 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -3.581 11.886 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.294 6.294 3 C -0.037 4.037 4 C 0.014 3.986 5 N -0.298 5.298 6 C -0.421 4.421 7 H 0.083 0.917 8 C -0.185 4.185 9 N -0.498 5.498 10 Si 0.726 3.274 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.210 1.210 14 C 0.171 3.829 15 N -0.330 5.330 16 C 0.327 3.673 17 O -0.361 6.361 18 C -0.142 4.142 19 C -0.172 4.172 20 C -0.176 4.176 21 C 0.048 3.952 22 H 0.096 0.904 23 C -0.175 4.175 24 C -0.210 4.210 25 C -0.217 4.217 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.578 -3.842 11.006 12.194 hybrid contribution 0.057 1.170 -0.454 1.257 sum -3.521 -2.671 10.551 11.440 Atomic orbital electron populations 1.22619 0.83036 1.01703 0.98973 1.87927 1.17915 1.28499 1.95083 1.23466 0.97952 0.84067 0.98213 1.20954 0.89522 0.97793 0.90313 1.44454 1.75514 1.02578 1.07300 1.18996 1.16541 1.03993 1.02577 0.91667 1.25338 0.96654 0.96667 0.99797 1.69780 1.33534 1.12479 1.34016 0.86433 0.79261 0.81061 0.80693 1.21655 1.21898 1.20954 1.21311 0.81521 0.81663 0.98408 1.51153 1.15361 1.62970 1.03550 1.20612 0.82135 0.76649 0.87944 1.90573 1.66994 1.51960 1.26621 1.22587 0.95739 0.97197 0.98720 1.21409 1.01615 0.93573 1.00561 1.21413 0.96790 0.98863 1.00524 1.21329 0.91240 0.96137 0.86450 0.90417 1.22465 0.91627 1.01618 1.01836 1.22988 1.03565 0.95343 0.99121 1.23150 0.95669 1.02134 1.00766 0.94748 0.90510 0.95232 0.95322 0.93644 0.93676 0.92190 0.91991 0.94328 0.85465 0.92589 0.92501 0.92107 0.92163 0.92501 0.92334 0.87814 0.87811 0.90021 0.90092 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.38 -6.49 7.80 -35.23 -0.27 -6.76 16 3 C 0.04 0.73 6.28 37.16 0.23 0.96 16 4 C 0.14 2.79 6.07 -4.04 -0.02 2.77 16 5 N -0.58 -13.67 2.73 -176.94 -0.48 -14.15 16 6 C -0.29 -7.76 9.59 -15.06 -0.14 -7.90 16 7 H 0.07 1.73 7.87 -52.49 -0.41 1.32 16 8 C 0.02 0.50 5.43 -17.43 -0.09 0.41 16 9 N -0.86 -24.60 6.64 55.49 0.37 -24.23 16 10 Si 0.90 22.25 29.58 -169.99 -5.03 17.22 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.38 8.78 5.28 -63.74 -0.34 8.45 16 15 N -0.59 -12.68 2.39 -186.01 -0.44 -13.13 16 16 C 0.54 12.49 7.54 -16.90 -0.13 12.36 16 17 O -0.49 -13.31 15.05 5.56 0.08 -13.22 16 18 C -0.14 -2.40 1.47 -156.35 -0.23 -2.63 16 19 C -0.11 -1.64 8.00 37.16 0.30 -1.35 16 20 C -0.12 -1.88 9.11 37.16 0.34 -1.54 16 21 C 0.15 2.68 3.73 -73.81 -0.28 2.41 16 22 H 0.08 1.38 7.25 -51.93 -0.38 1.00 16 23 C -0.16 -2.29 4.44 -90.62 -0.40 -2.69 16 24 C -0.17 -2.63 9.26 -26.69 -0.25 -2.88 16 25 C -0.18 -2.63 9.88 -26.69 -0.26 -2.90 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.85 5.66 -51.93 -0.29 0.56 16 32 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 33 H 0.27 7.98 7.81 -40.82 -0.32 7.66 16 34 H 0.04 0.86 4.31 -51.93 -0.22 0.64 16 35 H 0.13 3.53 5.62 -51.93 -0.29 3.24 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.67 7.52 -51.93 -0.39 0.28 16 38 H 0.06 0.92 7.37 -51.93 -0.38 0.53 16 39 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.31 7.29 -51.93 -0.38 0.93 16 43 H 0.10 1.88 5.52 -51.93 -0.29 1.59 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.11 1.91 4.64 -51.93 -0.24 1.67 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -30.14 351.01 -8.11 -38.25 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.46 Total: 3.70 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -0.16 Total: 7.03 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.56 Total: -51.51 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.19 Total: -19.98 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.14 -8.11 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840152607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.749 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds