Wall clock time and date at job start Tue Mar 31 2020 07:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47241 * 300.00044 * 3 2 1 6 6 H 1.48495 * 109.47065 * 59.99841 * 3 2 1 7 7 C 1.37875 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99848 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46695 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99518 * 179.97438 * 10 9 7 12 12 O 1.21586 * 119.99991 * 5.07622 * 11 10 9 13 13 N 1.34778 * 119.99694 * 185.07326 * 11 10 9 14 14 C 1.46999 * 120.61283 * 354.97145 * 13 11 10 15 15 C 1.53192 * 108.73471 * 126.40971 * 14 13 11 16 16 C 1.53036 * 109.34136 * 54.61821 * 15 14 13 17 17 C 1.53031 * 109.54003 * 298.61838 * 16 15 14 18 18 H 1.09007 * 109.49556 * 301.41416 * 17 16 15 19 19 C 1.53004 * 109.49906 * 181.35155 * 17 16 15 20 20 H 1.08995 * 109.47987 * 60.02275 * 19 17 16 21 21 C 1.53089 * 109.48127 * 180.02562 * 19 17 16 22 22 C 1.53180 * 109.16595 * 177.59007 * 21 19 17 23 23 C 1.53175 * 109.03256 * 303.01702 * 22 21 19 24 24 C 1.53098 * 109.16248 * 56.98428 * 23 22 21 25 25 O 1.42898 * 109.48006 * 299.99651 * 19 17 16 26 26 C 1.46924 * 120.62801 * 174.96772 * 13 11 10 27 27 H 0.97001 * 119.99813 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46888 * 60.00088 * 9 7 2 29 29 H 1.08999 * 109.46896 * 299.99664 * 9 7 2 30 30 H 0.97001 * 120.00577 * 0.02562 * 10 9 7 31 31 H 1.08993 * 109.63030 * 6.61252 * 14 13 11 32 32 H 1.09004 * 109.57566 * 246.16856 * 14 13 11 33 33 H 1.09000 * 109.49603 * 294.64749 * 15 14 13 34 34 H 1.09007 * 109.49599 * 174.58663 * 15 14 13 35 35 H 1.09002 * 109.45775 * 58.64124 * 16 15 14 36 36 H 1.09003 * 109.46081 * 178.60998 * 16 15 14 37 37 H 1.08999 * 109.52349 * 297.49734 * 21 19 17 38 38 H 1.09003 * 109.52584 * 57.68505 * 21 19 17 39 39 H 1.08996 * 109.54159 * 183.15523 * 22 21 19 40 40 H 1.08997 * 109.61196 * 62.92999 * 22 21 19 41 41 H 1.08989 * 109.52716 * 297.07430 * 23 22 21 42 42 H 1.09007 * 109.52088 * 176.88292 * 23 22 21 43 43 H 1.09000 * 109.47862 * 182.40793 * 24 23 22 44 44 H 1.08997 * 109.48100 * 62.36909 * 24 23 22 45 45 H 1.08993 * 109.58517 * 113.82131 * 26 13 11 46 46 H 1.09002 * 109.70544 * 353.46277 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5621 -5.1069 -0.0916 13 7 2.6252 -5.9063 0.1043 14 6 4.0741 -5.6579 0.1063 15 6 4.6849 -6.3190 1.3459 16 6 4.3006 -7.8001 1.3718 17 6 2.7783 -7.9325 1.4553 18 1 2.4178 -7.4275 2.3515 19 6 2.3970 -9.4130 1.5150 20 1 2.8495 -9.8697 2.3952 21 6 0.8740 -9.5450 1.5979 22 6 0.4971 -11.0297 1.5966 23 6 1.0702 -11.6894 0.3386 24 6 2.5856 -11.4747 0.3043 25 8 2.8683 -10.0743 0.3393 26 6 2.1451 -7.2903 0.2170 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 3.1567 -3.4355 0.0009 31 1 4.2616 -4.5846 0.1346 32 1 4.5191 -6.0850 -0.7924 33 1 4.3065 -5.8292 2.2431 34 1 5.7704 -6.2253 1.3106 35 1 4.6579 -8.2838 0.4627 36 1 4.7546 -8.2780 2.2399 37 1 0.5175 -9.0795 2.5168 38 1 0.4184 -9.0528 0.7387 39 1 -0.5882 -11.1303 1.5989 40 1 0.9101 -11.5128 2.4821 41 1 0.6186 -11.2406 -0.5460 42 1 0.8540 -12.7577 0.3568 43 1 2.9931 -11.9051 -0.6104 44 1 3.0409 -11.9587 1.1684 45 1 2.4329 -7.8504 -0.6727 46 1 1.0597 -7.2958 0.3171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854025310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:36 Heat of formation + Delta-G solvation = -93.175680 kcal Electronic energy + Delta-G solvation = -24919.900436 eV Core-core repulsion = 21422.655207 eV Total energy + Delta-G solvation = -3497.245229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30455 -39.23317 -37.01454 -34.21478 -33.82066 -33.44357 -32.11389 -31.84625 -29.35783 -27.24497 -25.35783 -24.89728 -24.02799 -22.37645 -22.05463 -20.41735 -20.08751 -19.01186 -17.97341 -16.46606 -16.23654 -15.91510 -15.54418 -15.06073 -14.82243 -14.71030 -14.62394 -14.28663 -14.04451 -13.72109 -13.33728 -13.00982 -12.98332 -12.85342 -12.69132 -12.40005 -11.91589 -11.69643 -11.54197 -11.42469 -11.29037 -11.00925 -10.93047 -10.87731 -10.83218 -10.66282 -10.39320 -10.28893 -10.23059 -9.54666 -9.31691 -9.25453 -8.69287 -8.28074 -7.64152 -6.11944 -4.18127 3.26180 3.27643 3.33930 3.37646 3.60165 3.97709 4.33889 4.39504 4.56655 4.65508 4.68658 4.76057 4.87140 4.90016 5.01471 5.03515 5.13507 5.24074 5.24169 5.30747 5.42991 5.46335 5.50832 5.61190 5.63516 5.71526 5.75196 5.83630 5.90000 5.90500 5.92578 6.00935 6.08768 6.12961 6.25396 6.42048 6.89348 7.08217 7.23338 7.57719 7.61379 7.62887 7.92810 8.07287 8.81180 8.97441 9.38730 9.53474 10.98412 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030141 B = 0.003089 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.743447 B = 9062.537244 C = 9669.385720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.731 5.731 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.638 5.638 14 C 0.113 3.887 15 C -0.135 4.135 16 C -0.108 4.108 17 C -0.095 4.095 18 H 0.085 0.915 19 C 0.101 3.899 20 H 0.058 0.942 21 C -0.157 4.157 22 C -0.121 4.121 23 C -0.158 4.158 24 C 0.062 3.938 25 O -0.373 6.373 26 C 0.141 3.859 27 H 0.265 0.735 28 H 0.025 0.975 29 H 0.023 0.977 30 H 0.385 0.615 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.067 0.933 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.926 -22.867 3.667 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.385 5.385 11 C 0.398 3.602 12 O -0.480 6.480 13 N -0.378 5.378 14 C -0.011 4.011 15 C -0.174 4.174 16 C -0.145 4.145 17 C -0.114 4.114 18 H 0.103 0.897 19 C 0.043 3.957 20 H 0.076 0.924 21 C -0.195 4.195 22 C -0.159 4.159 23 C -0.195 4.195 24 C -0.015 4.015 25 O -0.292 6.292 26 C 0.017 3.983 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.220 0.780 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.944 -22.730 3.455 24.325 hybrid contribution 0.713 0.821 0.281 1.123 sum 8.657 -21.910 3.735 23.853 Atomic orbital electron populations 1.69996 1.06072 1.27080 1.49161 1.24946 0.94909 0.99374 0.94833 0.86368 0.79819 0.83043 0.77709 1.19665 1.20820 1.20843 1.21262 0.93243 0.90468 1.52823 0.91996 1.18972 0.87848 0.81162 0.97534 1.45879 1.10778 1.04461 1.77365 1.16068 0.84805 0.81074 0.78222 1.90846 1.14489 1.83912 1.58732 1.47316 1.05218 1.06034 1.79191 1.21564 0.81073 1.00713 0.97773 1.21933 1.00438 0.96127 0.98870 1.21467 0.94606 0.96055 1.02395 1.21634 0.96757 0.92832 1.00207 0.89678 1.22058 0.93156 0.92596 0.87871 0.92444 1.22304 0.96589 0.96767 1.03803 1.21575 1.01106 0.95596 0.97620 1.22199 0.97043 1.01010 0.99279 1.22522 0.94578 0.82636 1.01746 1.87949 1.79136 1.20530 1.41599 1.21329 1.00122 0.80304 0.96515 0.92563 0.95719 0.95900 0.77977 0.90176 0.91836 0.91455 0.90932 0.90958 0.92239 0.90709 0.90164 0.91462 0.92110 0.90865 0.91196 0.89077 0.93562 0.91520 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 10 N -0.73 -16.47 5.46 -66.41 -0.36 -16.83 16 11 C 0.70 15.33 8.30 -86.91 -0.72 14.61 16 12 O -0.60 -15.62 15.79 5.29 0.08 -15.54 16 13 N -0.64 -10.68 2.97 -178.44 -0.53 -11.21 16 14 C 0.11 1.47 6.44 -3.67 -0.02 1.44 16 15 C -0.14 -1.45 6.08 -26.61 -0.16 -1.61 16 16 C -0.11 -1.11 5.00 -26.70 -0.13 -1.24 16 17 C -0.09 -1.10 2.23 -90.50 -0.20 -1.30 16 18 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 19 C 0.10 1.02 2.38 -26.68 -0.06 0.96 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 21 C -0.16 -1.56 5.13 -26.59 -0.14 -1.70 16 22 C -0.12 -0.99 6.03 -26.55 -0.16 -1.15 16 23 C -0.16 -1.21 6.14 -26.59 -0.16 -1.37 16 24 C 0.06 0.50 6.84 37.21 0.25 0.75 16 25 O -0.37 -3.95 9.00 -35.23 -0.32 -4.27 16 26 C 0.14 2.07 5.10 -3.71 -0.02 2.05 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.39 7.54 5.78 -40.82 -0.24 7.31 16 31 H 0.08 1.05 5.57 -51.93 -0.29 0.76 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 35 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.93 6.45 -51.93 -0.33 0.60 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.63 8.14 -51.94 -0.42 0.21 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.97 7.54 -51.93 -0.39 0.58 16 46 H 0.09 1.52 5.60 -51.93 -0.29 1.22 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -33.03 353.90 -9.87 -42.90 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.82 Total: 4.16 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.97 Total: 5.13 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.16 Total: -53.81 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.23 Total: -19.81 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.03 -9.87 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854025310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.273 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds