Wall clock time and date at job start Tue Mar 31 2020 08:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47452 * 2 1 4 4 H 1.09001 * 110.35020 * 52.85366 * 3 2 1 5 5 C 1.54941 * 110.31117 * 175.00162 * 3 2 1 6 6 C 1.55301 * 100.94396 * 155.35957 * 5 3 2 7 7 C 1.54387 * 102.24847 * 325.86323 * 6 5 3 8 8 H 1.09002 * 109.82925 * 261.74924 * 7 6 5 9 9 C 1.50703 * 109.82415 * 140.87148 * 7 6 5 10 10 O 1.21285 * 119.99679 * 245.18185 * 9 7 6 11 11 N 1.34774 * 120.00113 * 65.18853 * 9 7 6 12 12 C 1.46931 * 120.62903 * 179.97438 * 11 9 7 13 13 C 1.53196 * 108.77652 * 233.63051 * 12 11 9 14 14 C 1.53048 * 109.31140 * 305.36800 * 13 12 11 15 15 N 1.46496 * 109.45684 * 181.38589 * 14 13 12 16 16 C 1.36945 * 119.99718 * 154.97161 * 15 14 13 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.53036 * 109.52717 * 61.37097 * 14 13 12 25 25 C 1.46922 * 120.63304 * 0.02562 * 11 9 7 26 26 O 1.43237 * 107.66467 * 21.31373 * 7 6 5 27 27 H 1.08992 * 109.47003 * 59.99954 * 1 2 3 28 28 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46816 * 300.00219 * 1 2 3 30 30 H 1.08999 * 109.47342 * 239.99778 * 2 1 3 31 31 H 1.09005 * 109.47182 * 119.99823 * 2 1 3 32 32 H 1.09007 * 111.12663 * 37.43743 * 5 3 2 33 33 H 1.09007 * 111.16238 * 273.29581 * 5 3 2 34 34 H 1.09003 * 110.84859 * 207.68095 * 6 5 3 35 35 H 1.08994 * 110.85303 * 84.05664 * 6 5 3 36 36 H 1.08997 * 109.58309 * 113.84202 * 12 11 9 37 37 H 1.08996 * 109.58558 * 353.41460 * 12 11 9 38 38 H 1.08997 * 109.49789 * 185.41738 * 13 12 11 39 39 H 1.09003 * 109.52535 * 65.33023 * 13 12 11 40 40 H 1.09007 * 109.45421 * 301.35829 * 14 13 12 41 41 H 0.96996 * 120.00499 * 334.96891 * 15 14 13 42 42 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.50001 * 58.57725 * 24 14 13 44 44 H 1.09001 * 109.49742 * 178.68046 * 24 14 13 45 45 H 1.09002 * 109.58493 * 246.15815 * 25 11 9 46 46 H 1.09000 * 109.58667 * 6.58240 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5846 2.0056 0.8146 5 6 3.5841 1.4670 0.1266 6 6 3.9117 2.8383 -0.5245 7 6 2.8321 2.9455 -1.6230 8 1 3.2498 2.6417 -2.5828 9 6 2.3305 4.3640 -1.7098 10 8 1.1792 4.6185 -1.4255 11 7 3.1611 5.3496 -2.1036 12 6 2.6865 6.7372 -2.1938 13 6 2.9941 7.2735 -3.5954 14 6 4.4863 7.0993 -3.8878 15 7 4.7901 7.6413 -5.2144 16 6 6.0571 8.0731 -5.5038 17 1 6.8320 8.0145 -4.7539 18 6 6.3451 8.5862 -6.7610 19 7 5.4005 8.6581 -7.6748 20 14 8.0731 9.1759 -7.1556 21 1 8.1190 9.6740 -8.5538 22 1 8.4461 10.2726 -6.2264 23 1 9.0281 8.0494 -7.0004 24 6 4.8446 5.6119 -3.8503 25 6 4.5581 5.0568 -2.4520 26 8 1.7566 2.0710 -1.2622 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.0372 0.6483 -0.4326 33 1 3.8937 1.4443 1.1715 34 1 4.9102 2.8317 -0.9615 35 1 3.8095 3.6461 0.2000 36 1 3.1974 7.3472 -1.4488 37 1 1.6111 6.7676 -2.0188 38 1 2.7347 8.3310 -3.6454 39 1 2.4120 6.7208 -4.3328 40 1 5.0682 7.6321 -3.1357 41 1 4.0940 7.6942 -5.8878 42 1 5.6018 9.0170 -8.5532 43 1 4.2448 5.0746 -4.5848 44 1 5.9024 5.4866 -4.0816 45 1 5.2219 5.5295 -1.7281 46 1 4.7175 3.9785 -2.4474 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996638310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:40 Heat of formation + Delta-G solvation = -79.079534 kcal Electronic energy + Delta-G solvation = -24783.636702 eV Core-core repulsion = 21287.002727 eV Total energy + Delta-G solvation = -3496.633975 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72011 -39.01666 -37.18953 -34.56196 -33.89581 -32.66197 -31.87102 -30.92068 -29.45556 -28.53415 -25.30559 -24.14156 -23.09290 -22.49870 -21.99071 -21.22528 -20.20956 -18.93466 -17.75085 -17.05952 -16.51251 -16.38841 -15.82606 -14.84391 -14.77368 -14.24304 -14.20981 -13.81101 -13.71772 -13.66816 -13.46881 -13.28639 -13.15216 -13.11994 -12.33543 -12.14453 -12.07153 -11.93642 -11.78393 -11.53453 -11.29652 -11.11517 -10.98299 -10.90937 -10.86322 -10.80749 -10.47748 -10.28676 -10.26731 -9.85268 -9.69478 -9.24295 -8.92772 -8.49575 -7.00709 -5.79898 -3.09481 2.63128 2.92928 3.40663 3.45220 3.46636 3.62348 4.11154 4.32330 4.38827 4.55154 4.71212 4.80838 4.87137 4.94424 5.05087 5.14898 5.19415 5.30301 5.33420 5.37795 5.39352 5.45555 5.50932 5.51516 5.58310 5.65683 5.70143 5.70762 5.74020 5.92336 5.94325 5.99687 6.10981 6.20642 6.34652 6.37169 6.49051 6.58672 6.76985 6.87779 7.01492 7.50459 7.64869 8.26328 8.38307 9.49329 10.06964 10.41542 11.42546 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.031636 B = 0.002959 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.856232 B = 9460.941793 C = 9807.254291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.076 3.924 4 H 0.072 0.928 5 C -0.151 4.151 6 C -0.146 4.146 7 C 0.066 3.934 8 H 0.106 0.894 9 C 0.502 3.498 10 O -0.533 6.533 11 N -0.604 5.604 12 C 0.117 3.883 13 C -0.139 4.139 14 C 0.180 3.820 15 N -0.724 5.724 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.291 1.291 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.153 4.153 25 C 0.104 3.896 26 O -0.346 6.346 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 -15.612 17.417 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.018 3.982 4 H 0.090 0.910 5 C -0.189 4.189 6 C -0.184 4.184 7 C 0.005 3.995 8 H 0.124 0.876 9 C 0.289 3.711 10 O -0.409 6.409 11 N -0.339 5.339 12 C -0.006 4.006 13 C -0.178 4.178 14 C 0.069 3.931 15 N -0.364 5.364 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.194 4.194 25 C -0.019 4.019 26 O -0.264 6.264 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.268 -15.437 17.420 23.664 hybrid contribution 1.071 0.459 -0.570 1.298 sum -3.197 -14.978 16.849 22.770 Atomic orbital electron populations 1.21730 0.95154 1.01388 1.02615 1.21647 0.97026 0.94481 1.02554 1.23154 0.94017 0.94017 0.86971 0.91034 1.23334 0.95927 0.97347 1.02248 1.23190 0.99115 0.98510 0.97573 1.22604 0.87947 0.88648 1.00290 0.87636 1.20913 0.85895 0.87104 0.77208 1.90677 1.17786 1.83435 1.49040 1.48157 1.11716 1.07950 1.66092 1.21612 1.00889 0.80544 0.97555 1.22212 0.98538 1.01491 0.95580 1.20153 0.92221 0.91148 0.89545 1.42435 1.10370 1.73949 1.09691 1.19177 0.87580 1.33792 0.96679 0.91229 1.24757 0.97645 1.02037 0.96464 1.69655 1.31813 1.51618 1.04935 0.86279 0.84203 0.78574 0.77175 1.21705 1.21263 1.21283 1.22688 1.02488 1.00218 0.93982 1.21979 0.81218 1.00494 0.98220 1.88579 1.41946 1.58341 1.37522 0.91781 0.92856 0.92849 0.91098 0.90790 0.89833 0.89588 0.88680 0.89940 0.91585 0.89426 0.90538 0.91815 0.93422 0.78240 0.93410 0.92127 0.90575 0.91322 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.85 37.16 0.37 -0.94 16 2 C -0.12 -0.95 5.66 -26.73 -0.15 -1.10 16 3 C 0.08 0.73 3.41 -25.70 -0.09 0.65 16 4 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -1.09 6.57 -24.49 -0.16 -1.25 16 6 C -0.15 -1.24 5.38 -24.78 -0.13 -1.37 16 7 C 0.07 0.79 3.06 -27.15 -0.08 0.71 16 8 H 0.11 1.15 7.48 -51.93 -0.39 0.76 16 9 C 0.50 7.58 6.97 -10.99 -0.08 7.50 16 10 O -0.53 -10.11 15.94 -14.10 -0.22 -10.34 16 11 N -0.60 -8.44 2.97 -172.79 -0.51 -8.95 16 12 C 0.12 1.69 6.43 -3.71 -0.02 1.67 16 13 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 14 C 0.18 3.37 2.73 -67.89 -0.19 3.18 16 15 N -0.72 -17.60 5.12 -53.38 -0.27 -17.88 16 16 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 20 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.15 -2.46 5.66 -26.63 -0.15 -2.62 16 25 C 0.10 1.27 5.71 -3.73 -0.02 1.25 16 26 O -0.35 -4.62 10.03 -54.88 -0.55 -5.17 16 27 H 0.06 0.67 7.99 -51.93 -0.41 0.26 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.09 0.63 6.96 -51.93 -0.36 0.27 16 35 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.75 4.47 -51.93 -0.23 0.52 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -32.70 359.91 -9.48 -42.19 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.94 Total: 6.80 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.10 Total: -1.86 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.06 Total: -53.96 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.77 Total: -15.50 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.70 -9.48 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996638310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.894 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds