Wall clock time and date at job start Tue Mar 31 2020 09:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46791 * 2 1 4 4 H 1.09000 * 109.48129 * 305.01534 * 3 2 1 5 5 C 1.53094 * 109.47754 * 184.99808 * 3 2 1 6 6 C 1.53178 * 109.16608 * 297.61381 * 5 3 2 7 7 H 1.09005 * 109.53922 * 62.97259 * 6 5 3 8 8 C 1.52995 * 109.54677 * 183.15197 * 6 5 3 9 9 C 1.50700 * 109.47051 * 184.99896 * 8 6 5 10 10 O 1.21282 * 120.00133 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00024 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00047 * 179.97438 * 11 9 8 13 13 C 1.53943 * 113.74126 * 251.67675 * 12 11 9 14 14 N 1.47590 * 86.11730 * 222.04806 * 13 12 11 15 15 C 1.36932 * 134.49165 * 204.64182 * 14 13 12 16 16 H 1.07996 * 119.99723 * 173.48666 * 15 14 13 17 17 C 1.38819 * 120.00254 * 353.48376 * 15 14 13 18 18 N 1.31615 * 119.99978 * 5.06860 * 17 15 14 19 19 Si 1.86802 * 119.99913 * 185.06397 * 17 15 14 20 20 H 1.48502 * 109.46757 * 94.99061 * 19 17 15 21 21 H 1.48501 * 109.46920 * 214.98744 * 19 17 15 22 22 H 1.48496 * 109.47358 * 334.99036 * 19 17 15 23 23 C 1.47578 * 91.01112 * 24.64599 * 14 13 12 24 24 C 1.53177 * 109.03401 * 303.02079 * 6 5 3 25 25 C 1.53096 * 109.16469 * 56.97982 * 24 6 5 26 26 O 1.42900 * 109.41193 * 302.39082 * 25 24 6 27 27 H 1.08998 * 109.47345 * 300.00217 * 1 2 3 28 28 H 1.08998 * 109.46769 * 60.00211 * 1 2 3 29 29 H 1.09003 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46640 * 239.99604 * 2 1 3 31 31 H 1.08998 * 109.46769 * 119.99789 * 2 1 3 32 32 H 1.09003 * 109.52257 * 177.70729 * 5 3 2 33 33 H 1.09008 * 109.52085 * 57.51831 * 5 3 2 34 34 H 1.08997 * 109.47049 * 65.00158 * 8 6 5 35 35 H 1.09000 * 109.47202 * 304.99540 * 8 6 5 36 36 H 0.97004 * 119.99732 * 0.02562 * 11 9 8 37 37 H 1.08994 * 112.94752 * 23.41270 * 12 11 9 38 38 H 1.08991 * 113.77564 * 336.35205 * 13 12 11 39 39 H 1.09008 * 113.76705 * 107.75196 * 13 12 11 40 40 H 0.96996 * 120.00576 * 180.02562 * 18 17 15 41 41 H 1.09004 * 113.76495 * 221.06210 * 23 14 13 42 42 H 1.08993 * 113.77414 * 89.66351 * 23 14 13 43 43 H 1.09006 * 109.52347 * 176.88199 * 24 6 5 44 44 H 1.08998 * 109.52507 * 297.07057 * 24 6 5 45 45 H 1.08999 * 109.47963 * 182.41024 * 25 24 6 46 46 H 1.08996 * 109.49313 * 62.37773 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9817 -0.8416 5 6 3.5657 1.4446 -0.1257 6 6 4.1715 0.7377 1.0907 7 1 3.8517 -0.3043 1.1035 8 6 5.6981 0.8036 1.0133 9 6 6.2934 0.0037 2.1433 10 8 5.5680 -0.5637 2.9325 11 7 7.6318 -0.0821 2.2762 12 6 8.2105 -0.8592 3.3751 13 6 8.8551 0.0056 4.4735 14 7 9.9454 -0.9892 4.4766 15 6 10.8747 -1.3915 5.3983 16 1 11.5166 -2.2336 5.1858 17 6 10.9919 -0.7168 6.6059 18 7 10.1452 0.2447 6.9074 19 14 12.3511 -1.1739 7.8031 20 1 13.5163 -0.2771 7.5947 21 1 11.8552 -1.0259 9.1950 22 1 12.7623 -2.5818 7.5711 23 6 9.6318 -1.3759 3.0874 24 6 3.6923 1.4384 2.3656 25 6 2.1617 1.4366 2.3952 26 8 1.6632 2.0814 1.2214 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9264 2.4724 -0.1668 33 1 3.8570 0.9187 -1.0351 34 1 6.0215 1.8414 1.0931 35 1 6.0318 0.3911 0.0611 36 1 8.2120 0.3714 1.6448 37 1 7.5343 -1.6241 3.7567 38 1 9.1627 0.9935 4.1310 39 1 8.2841 0.0344 5.4016 40 1 10.2272 0.7164 7.7509 41 1 9.6809 -2.4501 2.9087 42 1 10.1676 -0.7939 2.3376 43 1 4.0741 0.9082 3.2382 44 1 4.0556 2.4661 2.3750 45 1 1.8145 1.9716 3.2791 46 1 1.7998 0.4089 2.4268 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031218521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:31 Heat of formation + Delta-G solvation = -48.180461 kcal Electronic energy + Delta-G solvation = -24372.611572 eV Core-core repulsion = 20877.317482 eV Total energy + Delta-G solvation = -3495.294090 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.38468 -39.29234 -37.59747 -34.63373 -33.62050 -33.48908 -31.85936 -30.32771 -29.10144 -27.27784 -24.84914 -24.48819 -23.61677 -23.04921 -22.01977 -20.10894 -19.56167 -19.21122 -16.94046 -16.78462 -16.50591 -16.01468 -15.85772 -15.38881 -14.93642 -14.74595 -14.59804 -13.92892 -13.77946 -13.74474 -13.22888 -12.99953 -12.82776 -12.59593 -12.29246 -12.04289 -11.83928 -11.69034 -11.47883 -11.43035 -11.37661 -11.13568 -10.92280 -10.88982 -10.79665 -10.66538 -10.44375 -10.14165 -10.05470 -9.59588 -9.56176 -9.26626 -8.82835 -8.42674 -6.93669 -5.81532 -3.14684 2.92467 3.37186 3.41174 3.44973 3.51964 3.75575 4.42730 4.48948 4.58163 4.65061 4.78020 4.79815 4.94687 5.09791 5.16412 5.24101 5.25297 5.32375 5.37367 5.42488 5.44948 5.49900 5.57164 5.58998 5.68788 5.72445 5.78416 5.82324 5.92761 6.00194 6.04612 6.06665 6.19311 6.27620 6.32969 6.41134 6.54539 6.77416 7.15196 7.20907 7.33999 7.53364 7.88956 7.93594 8.56950 8.99971 9.66020 10.53608 11.35756 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.036290 B = 0.002622 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.377483 B =10677.360135 C =10977.922398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.161 4.161 3 C 0.092 3.908 4 H 0.098 0.902 5 C -0.146 4.146 6 C -0.072 4.072 7 H 0.081 0.919 8 C -0.138 4.138 9 C 0.509 3.491 10 O -0.543 6.543 11 N -0.717 5.717 12 C 0.091 3.909 13 C 0.157 3.843 14 N -0.607 5.607 15 C -0.227 4.227 16 H 0.082 0.918 17 C -0.006 4.006 18 N -0.917 5.917 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.111 3.889 24 C -0.156 4.156 25 C 0.058 3.942 26 O -0.378 6.378 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.396 0.604 37 H 0.110 0.890 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.255 0.745 41 H 0.048 0.952 42 H 0.035 0.965 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 2.875 -17.173 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.198 4.198 3 C 0.034 3.966 4 H 0.116 0.884 5 C -0.184 4.184 6 C -0.091 4.091 7 H 0.099 0.901 8 C -0.178 4.178 9 C 0.296 3.704 10 O -0.420 6.420 11 N -0.367 5.367 12 C -0.014 4.014 13 C 0.031 3.969 14 N -0.334 5.334 15 C -0.354 4.354 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.563 5.563 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.016 4.016 24 C -0.193 4.193 25 C -0.018 4.018 26 O -0.297 6.297 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.229 0.771 37 H 0.128 0.872 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.114 0.886 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.916 2.621 -16.259 22.903 hybrid contribution 1.492 -0.072 0.309 1.525 sum -14.424 2.549 -15.950 21.655 Atomic orbital electron populations 1.21700 0.95316 1.01355 1.02159 1.22216 0.96876 0.97563 1.03158 1.22167 0.93577 0.93134 0.87701 0.88415 1.22282 0.96001 1.01670 0.98426 1.20937 0.92832 1.00623 0.94660 0.90072 1.21757 0.96575 1.01376 0.98081 1.20607 0.82565 0.81127 0.86138 1.90653 1.59902 1.46825 1.44660 1.46190 1.06455 1.52601 1.31504 1.23892 0.93788 0.95943 0.87819 1.22603 0.87256 0.91421 0.95647 1.45670 1.37201 1.42820 1.07687 1.18987 1.10878 1.10908 0.94671 0.90017 1.24862 0.99210 0.97991 0.98206 1.69844 1.36954 1.25662 1.23815 0.86093 0.81417 0.77829 0.80399 1.21561 1.21608 1.20462 1.22885 0.91401 0.98146 0.89158 1.22359 0.96096 1.01243 0.99627 1.22595 0.93593 0.97877 0.87764 1.87954 1.74775 1.53252 1.13723 0.92197 0.92906 0.92951 0.91138 0.90784 0.90974 0.90992 0.89018 0.89149 0.77058 0.87192 0.95304 0.90998 0.93502 0.93368 0.94778 0.88592 0.91707 0.89123 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.16 0.36 -0.79 16 2 C -0.16 -1.33 4.74 -26.73 -0.13 -1.45 16 3 C 0.09 0.81 3.29 -26.69 -0.09 0.72 16 4 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.15 -1.21 4.92 -26.59 -0.13 -1.35 16 6 C -0.07 -0.74 1.61 -90.44 -0.15 -0.89 16 7 H 0.08 0.94 6.55 -51.93 -0.34 0.60 16 8 C -0.14 -1.39 5.18 -27.89 -0.14 -1.54 16 9 C 0.51 7.44 7.57 -10.99 -0.08 7.35 16 10 O -0.54 -9.95 13.60 5.56 0.08 -9.88 16 11 N -0.72 -10.61 5.36 -55.33 -0.30 -10.91 16 12 C 0.09 1.74 4.43 -70.14 -0.31 1.43 16 13 C 0.16 3.75 7.23 -2.97 -0.02 3.73 16 14 N -0.61 -15.63 3.70 -178.07 -0.66 -16.28 16 15 C -0.23 -6.40 10.70 -15.06 -0.16 -6.56 16 16 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 18 N -0.92 -27.49 11.51 55.49 0.64 -26.85 16 19 Si 0.91 22.17 29.56 -169.99 -5.02 17.14 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.11 2.21 8.69 -2.97 -0.03 2.18 16 24 C -0.16 -1.83 5.13 -26.59 -0.14 -1.96 16 25 C 0.06 0.63 6.52 37.21 0.24 0.87 16 26 O -0.38 -4.19 10.13 -35.23 -0.36 -4.55 16 27 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.70 4.98 -51.93 -0.26 0.44 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 4.70 8.73 -40.82 -0.36 4.34 16 37 H 0.11 2.31 7.46 -51.93 -0.39 1.92 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.95 7.36 -51.92 -0.38 1.57 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.63 8.12 -51.93 -0.42 0.20 16 43 H 0.10 1.38 6.07 -51.93 -0.32 1.07 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.57 6.23 -51.93 -0.32 0.25 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -32.76 357.67 -8.91 -41.66 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.81 Total: 2.77 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.86 Total: 1.51 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.32 Total: -54.04 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.28 Total: -14.42 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.76 -8.91 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031218521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.517 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds