Wall clock time and date at job start Tue Mar 31 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47573 * 2 1 4 4 N 1.46506 * 109.47736 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00003 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00493 * 4.96508 * 5 4 3 7 7 C 1.50706 * 119.99533 * 184.95850 * 5 4 3 8 8 N 1.46895 * 109.47213 * 40.87076 * 7 5 4 9 9 C 1.46904 * 110.99923 * 62.75492 * 8 7 5 10 10 C 1.52999 * 109.46948 * 176.91693 * 9 8 7 11 11 C 1.52998 * 109.47012 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47299 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99774 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99955 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99671 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00078 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47551 * 89.99694 * 16 14 12 18 18 H 1.48500 * 109.46670 * 210.00130 * 16 14 12 19 19 H 1.48498 * 109.47013 * 329.99618 * 16 14 12 20 20 C 1.52996 * 109.47075 * 160.87448 * 7 5 4 21 21 C 1.53005 * 109.47381 * 59.99592 * 20 7 5 22 22 C 1.52995 * 109.46862 * 60.00272 * 21 20 7 23 23 C 1.52998 * 109.47266 * 299.99990 * 22 21 20 24 24 C 1.53004 * 109.47165 * 280.87111 * 7 5 4 25 25 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46947 * 300.00407 * 1 2 3 27 27 H 1.09002 * 109.47102 * 59.99957 * 1 2 3 28 28 H 1.09001 * 109.47328 * 239.99958 * 2 1 3 29 29 H 1.09002 * 109.47102 * 120.00043 * 2 1 3 30 30 H 1.08999 * 109.47316 * 59.99820 * 3 2 1 31 31 H 1.09005 * 109.47341 * 299.99811 * 3 2 1 32 32 H 0.96996 * 119.99199 * 359.97438 * 4 3 2 33 33 H 1.00902 * 111.00119 * 298.80133 * 8 7 5 34 34 H 1.09000 * 109.47227 * 296.91984 * 9 8 7 35 35 H 1.09007 * 109.46724 * 56.92069 * 9 8 7 36 36 H 1.09000 * 109.47394 * 300.00188 * 10 9 8 37 37 H 1.09002 * 109.46691 * 60.00815 * 10 9 8 38 38 H 1.09004 * 109.47348 * 300.00905 * 11 10 9 39 39 H 1.09008 * 109.47022 * 60.00487 * 11 10 9 40 40 H 0.96997 * 119.99572 * 179.97438 * 15 14 12 41 41 H 1.09006 * 109.47151 * 300.00029 * 20 7 5 42 42 H 1.08995 * 109.47637 * 180.02562 * 20 7 5 43 43 H 1.08998 * 109.46920 * 300.00454 * 21 20 7 44 44 H 1.08997 * 109.46966 * 180.02562 * 21 20 7 45 45 H 1.09004 * 109.47180 * 59.99887 * 22 21 20 46 46 H 1.09003 * 109.47213 * 180.02562 * 22 21 20 47 47 H 1.09006 * 109.47516 * 179.97438 * 23 22 21 48 48 H 1.08998 * 109.47307 * 300.00303 * 23 22 21 49 49 H 1.08998 * 109.47205 * 180.02562 * 24 7 5 50 50 H 1.08997 * 109.47119 * 59.99856 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1790 2.6096 0.0002 6 8 3.5760 3.6580 0.0902 7 6 5.6818 2.6119 -0.1120 8 7 6.1010 1.6050 -1.0960 9 6 5.5831 1.9273 -2.4324 10 6 6.1025 0.9015 -3.4417 11 6 5.5626 1.2369 -4.8334 12 6 6.0737 0.2261 -5.8275 13 1 6.7186 -0.5756 -5.4993 14 6 5.7178 0.3248 -7.1559 15 7 6.1642 -0.5570 -8.0235 16 14 4.6028 1.7119 -7.7236 17 1 5.4286 2.8824 -8.1147 18 1 3.8032 1.2583 -8.8898 19 1 3.6901 2.0975 -6.6175 20 6 6.1575 3.9944 -0.5627 21 6 5.7209 5.0433 0.4622 22 6 6.3344 4.7118 1.8239 23 6 5.8588 3.3293 2.2748 24 6 6.2954 2.2805 1.2499 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9900 0.6024 0.0013 33 1 5.8155 0.6801 -0.8110 34 1 4.4935 1.9014 -2.4158 35 1 5.9185 2.9234 -2.7214 36 1 7.1920 0.9274 -3.4582 37 1 5.7670 -0.0945 -3.1526 38 1 4.4730 1.2107 -4.8165 39 1 5.8977 2.2330 -5.1228 40 1 5.9136 -0.4878 -8.9580 41 1 5.7203 4.2306 -1.5330 42 1 7.2444 3.9961 -0.6443 43 1 4.6339 5.0415 0.5433 44 1 6.0594 6.0282 0.1407 45 1 7.4215 4.7135 1.7428 46 1 6.0231 5.4588 2.5542 47 1 6.2963 3.0930 3.2448 48 1 4.7719 3.3276 2.3559 49 1 7.3824 2.2826 1.1689 50 1 5.9566 1.2956 1.5711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085864136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:14 Heat of formation + Delta-G solvation = -66.821048 kcal Electronic energy + Delta-G solvation = -25486.288888 eV Core-core repulsion = 22126.019575 eV Total energy + Delta-G solvation = -3360.269312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05080 -37.66020 -36.20427 -35.54252 -33.63261 -32.66233 -31.58753 -30.80885 -29.06018 -26.65242 -26.14584 -23.28879 -23.09418 -22.00348 -21.68746 -20.77909 -20.06928 -19.44160 -16.88148 -16.72264 -16.45981 -16.08611 -15.72244 -15.07241 -14.94529 -14.52224 -14.20834 -14.02877 -13.82148 -13.73983 -13.19885 -13.09140 -12.64979 -12.54695 -12.39765 -12.30995 -12.15334 -12.05943 -12.00056 -11.56495 -11.40928 -11.18210 -11.11523 -11.08228 -10.90842 -10.81539 -10.52185 -10.13563 -9.89032 -9.79817 -9.59165 -9.51180 -9.19352 -9.17785 -8.53282 -8.33101 -6.03982 -4.01735 2.54670 2.99169 3.31222 3.38511 3.42551 4.04742 4.45759 4.47884 4.53588 4.60499 4.70694 4.75677 4.94689 4.96319 5.14948 5.19744 5.30084 5.33434 5.37294 5.38131 5.47083 5.49680 5.51914 5.60253 5.67799 5.70621 5.73811 5.85419 5.85790 5.93305 5.97349 6.05754 6.10626 6.12729 6.16915 6.23256 6.26297 6.49322 6.53095 6.69677 6.88770 6.99694 7.28241 7.31687 7.39375 7.45858 7.80181 8.14670 8.54751 9.01324 9.58915 11.09521 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.004290 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.116367 B = 6525.660072 C = 7895.917035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.119 3.881 4 N -0.733 5.733 5 C 0.495 3.505 6 O -0.531 6.531 7 C 0.104 3.896 8 N -0.668 5.668 9 C 0.048 3.952 10 C -0.096 4.096 11 C -0.012 4.012 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.267 1.267 20 C -0.091 4.091 21 C -0.145 4.145 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.101 4.101 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.397 0.603 33 H 0.337 0.663 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.012 0.988 39 H 0.011 0.989 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.085 0.915 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 5.066 22.791 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C -0.005 4.005 4 N -0.386 5.386 5 C 0.280 3.720 6 O -0.407 6.407 7 C 0.009 3.991 8 N -0.300 5.300 9 C -0.080 4.080 10 C -0.134 4.134 11 C -0.050 4.050 12 C -0.556 4.556 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.129 4.129 21 C -0.182 4.182 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.139 4.139 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.155 0.845 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.332 6.069 22.524 23.929 hybrid contribution -1.309 -0.098 -0.469 1.394 sum -6.641 5.971 22.055 23.794 Atomic orbital electron populations 1.21666 0.94534 1.02215 1.02230 1.21748 0.97065 0.95784 1.02946 1.21387 0.79580 0.97266 1.02256 1.46130 1.07458 1.08920 1.76075 1.21902 0.91701 0.83431 0.74923 1.90504 1.70566 1.30752 1.48879 1.21319 0.87901 0.95654 0.94229 1.60682 1.63202 1.04049 1.02079 1.22335 0.96658 1.01403 0.87601 1.21418 1.01006 0.96460 0.94515 1.19536 0.95994 0.96976 0.92534 1.21130 1.30556 1.12090 0.91858 0.91001 1.25028 0.95808 0.95862 0.96773 1.69919 1.45532 1.35895 1.02986 0.86793 0.81414 0.82817 0.78346 1.20238 1.21402 1.19146 1.21426 1.01317 0.91009 0.99189 1.22067 1.04920 0.97436 0.93804 1.21494 1.00164 0.96206 0.97410 1.21554 1.01176 0.95154 0.97952 1.21530 1.02064 0.98518 0.91824 0.92098 0.92542 0.92254 0.90883 0.91405 0.91652 0.91539 0.76842 0.84468 0.95508 0.90637 0.91773 0.93065 0.96965 0.97068 0.92771 0.91422 0.90619 0.87518 0.92561 0.92276 0.92379 0.91776 0.92085 0.89665 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.14 -1.11 6.05 -26.74 -0.16 -1.27 16 3 C 0.12 1.22 5.68 -4.04 -0.02 1.20 16 4 N -0.73 -7.95 5.23 -60.29 -0.32 -8.26 16 5 C 0.50 6.47 4.21 -10.98 -0.05 6.43 16 6 O -0.53 -8.40 12.96 5.56 0.07 -8.33 16 7 C 0.10 1.24 0.64 -132.75 -0.08 1.16 16 8 N -0.67 -8.58 5.99 -101.13 -0.61 -9.19 16 9 C 0.05 0.77 4.99 -3.82 -0.02 0.75 16 10 C -0.10 -1.85 5.44 -26.73 -0.15 -2.00 16 11 C -0.01 -0.30 4.04 -27.89 -0.11 -0.41 16 12 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 16 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 20 C -0.09 -1.18 4.23 -26.73 -0.11 -1.29 16 21 C -0.14 -1.74 5.63 -26.73 -0.15 -1.89 16 22 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 23 C -0.12 -1.16 5.70 -26.73 -0.15 -1.31 16 24 C -0.10 -0.99 5.01 -26.73 -0.13 -1.12 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.40 3.56 7.18 -40.82 -0.29 3.26 16 33 H 0.34 3.76 7.44 -39.29 -0.29 3.47 16 34 H 0.03 0.45 7.13 -51.93 -0.37 0.08 16 35 H 0.08 1.27 6.08 -51.93 -0.32 0.95 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 39 H 0.01 0.27 7.57 -51.92 -0.39 -0.13 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.07 0.99 6.29 -51.93 -0.33 0.66 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.11 1.52 4.94 -51.97 -0.26 1.26 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.68 7.03 -51.93 -0.37 0.31 16 49 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -31.91 376.37 -9.77 -41.69 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -9.34 Total: 3.47 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.36 Total: -15.13 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.15 Total: -44.73 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.07 Total: -8.33 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.91 -9.77 -41.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085864136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.135 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds