Wall clock time and date at job start Tue Mar 31 2020 07:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47573 * 2 1 4 4 N 1.46506 * 109.47736 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00003 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00493 * 4.96508 * 5 4 3 7 7 C 1.50706 * 119.99533 * 184.95850 * 5 4 3 8 8 N 1.46895 * 109.47213 * 40.87076 * 7 5 4 9 9 C 1.46904 * 110.99923 * 62.75492 * 8 7 5 10 10 C 1.52999 * 109.46948 * 176.91693 * 9 8 7 11 11 C 1.52998 * 109.47012 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47299 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99774 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99955 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99671 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00078 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47551 * 89.99694 * 16 14 12 18 18 H 1.48500 * 109.46670 * 210.00130 * 16 14 12 19 19 H 1.48498 * 109.47013 * 329.99618 * 16 14 12 20 20 C 1.52996 * 109.47075 * 160.87448 * 7 5 4 21 21 C 1.53005 * 109.47381 * 59.99592 * 20 7 5 22 22 C 1.52995 * 109.46862 * 60.00272 * 21 20 7 23 23 C 1.52998 * 109.47266 * 299.99990 * 22 21 20 24 24 C 1.53004 * 109.47165 * 280.87111 * 7 5 4 25 25 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46947 * 300.00407 * 1 2 3 27 27 H 1.09002 * 109.47102 * 59.99957 * 1 2 3 28 28 H 1.09001 * 109.47328 * 239.99958 * 2 1 3 29 29 H 1.09002 * 109.47102 * 120.00043 * 2 1 3 30 30 H 1.08999 * 109.47316 * 59.99820 * 3 2 1 31 31 H 1.09005 * 109.47341 * 299.99811 * 3 2 1 32 32 H 0.96996 * 119.99199 * 359.97438 * 4 3 2 33 33 H 1.00902 * 111.00119 * 298.80133 * 8 7 5 34 34 H 1.09000 * 109.47227 * 296.91984 * 9 8 7 35 35 H 1.09007 * 109.46724 * 56.92069 * 9 8 7 36 36 H 1.09000 * 109.47394 * 300.00188 * 10 9 8 37 37 H 1.09002 * 109.46691 * 60.00815 * 10 9 8 38 38 H 1.09004 * 109.47348 * 300.00905 * 11 10 9 39 39 H 1.09008 * 109.47022 * 60.00487 * 11 10 9 40 40 H 0.96997 * 119.99572 * 179.97438 * 15 14 12 41 41 H 1.09006 * 109.47151 * 300.00029 * 20 7 5 42 42 H 1.08995 * 109.47637 * 180.02562 * 20 7 5 43 43 H 1.08998 * 109.46920 * 300.00454 * 21 20 7 44 44 H 1.08997 * 109.46966 * 180.02562 * 21 20 7 45 45 H 1.09004 * 109.47180 * 59.99887 * 22 21 20 46 46 H 1.09003 * 109.47213 * 180.02562 * 22 21 20 47 47 H 1.09006 * 109.47516 * 179.97438 * 23 22 21 48 48 H 1.08998 * 109.47307 * 300.00303 * 23 22 21 49 49 H 1.08998 * 109.47205 * 180.02562 * 24 7 5 50 50 H 1.08997 * 109.47119 * 59.99856 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1790 2.6096 0.0002 6 8 3.5760 3.6580 0.0902 7 6 5.6818 2.6119 -0.1120 8 7 6.1010 1.6050 -1.0960 9 6 5.5831 1.9273 -2.4324 10 6 6.1025 0.9015 -3.4417 11 6 5.5626 1.2369 -4.8334 12 6 6.0737 0.2261 -5.8275 13 1 6.7186 -0.5756 -5.4993 14 6 5.7178 0.3248 -7.1559 15 7 6.1642 -0.5570 -8.0235 16 14 4.6028 1.7119 -7.7236 17 1 5.4286 2.8824 -8.1147 18 1 3.8032 1.2583 -8.8898 19 1 3.6901 2.0975 -6.6175 20 6 6.1575 3.9944 -0.5627 21 6 5.7209 5.0433 0.4622 22 6 6.3344 4.7118 1.8239 23 6 5.8588 3.3293 2.2748 24 6 6.2954 2.2805 1.2499 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9900 0.6024 0.0013 33 1 5.8155 0.6801 -0.8110 34 1 4.4935 1.9014 -2.4158 35 1 5.9185 2.9234 -2.7214 36 1 7.1920 0.9274 -3.4582 37 1 5.7670 -0.0945 -3.1526 38 1 4.4730 1.2107 -4.8165 39 1 5.8977 2.2330 -5.1228 40 1 5.9136 -0.4878 -8.9580 41 1 5.7203 4.2306 -1.5330 42 1 7.2444 3.9961 -0.6443 43 1 4.6339 5.0415 0.5433 44 1 6.0594 6.0282 0.1407 45 1 7.4215 4.7135 1.7428 46 1 6.0231 5.4588 2.5542 47 1 6.2963 3.0930 3.2448 48 1 4.7719 3.3276 2.3559 49 1 7.3824 2.2826 1.1689 50 1 5.9566 1.2956 1.5711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085864136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:13 Heat of formation + Delta-G solvation = -87.774216 kcal Electronic energy + Delta-G solvation = -25487.197485 eV Core-core repulsion = 22126.019575 eV Total energy + Delta-G solvation = -3361.177910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.04234 -38.60704 -37.36678 -36.57230 -35.32812 -33.84488 -33.11157 -31.70136 -30.38148 -27.79867 -27.39544 -24.61575 -24.00389 -23.15375 -22.62506 -21.77618 -21.65802 -20.38012 -18.90639 -17.89095 -17.40295 -17.02126 -16.67506 -16.45697 -16.10771 -15.84098 -15.43159 -15.20886 -14.89753 -14.81962 -14.63005 -14.11326 -13.90749 -13.76595 -13.50867 -13.33083 -13.15826 -13.13065 -12.99714 -12.90955 -12.77577 -12.48099 -12.10788 -11.97291 -11.88417 -11.86319 -11.79904 -11.68467 -11.48732 -11.32320 -11.19973 -10.93276 -10.77392 -10.58269 -10.14467 -9.43462 -8.30499 -6.33789 1.33641 1.34514 1.46284 1.53555 2.08426 2.34034 2.97684 3.04912 3.56655 3.66972 3.82006 3.92792 4.01060 4.12163 4.17243 4.24981 4.28659 4.29026 4.36848 4.53575 4.57298 4.60857 4.64455 4.67289 4.69916 4.80139 4.81649 4.88015 4.93842 5.04071 5.07119 5.10141 5.13050 5.19061 5.22232 5.25310 5.29281 5.34575 5.35170 5.40540 5.50105 5.58420 5.64918 5.74669 5.85257 6.26400 6.30910 6.47403 6.74265 7.18284 7.30828 8.86265 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.004290 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.116367 B = 6525.660072 C = 7895.917035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.119 3.881 4 N -0.725 5.725 5 C 0.491 3.509 6 O -0.563 6.563 7 C 0.107 3.893 8 N -0.662 5.662 9 C 0.065 3.935 10 C -0.085 4.085 11 C -0.011 4.011 12 C -0.529 4.529 13 H 0.036 0.964 14 C 0.007 3.993 15 N -0.950 5.950 16 Si 0.946 3.054 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.253 1.253 20 C -0.093 4.093 21 C -0.142 4.142 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.097 4.097 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.408 0.592 33 H 0.349 0.651 34 H 0.021 0.979 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.013 0.987 39 H 0.013 0.987 40 H 0.266 0.734 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.092 0.908 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 5.467 24.678 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.004 4.004 4 N -0.378 5.378 5 C 0.277 3.723 6 O -0.441 6.441 7 C 0.012 3.988 8 N -0.294 5.294 9 C -0.064 4.064 10 C -0.123 4.123 11 C -0.049 4.049 12 C -0.567 4.567 13 H 0.054 0.946 14 C -0.190 4.190 15 N -0.591 5.591 16 Si 0.770 3.230 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.176 1.176 20 C -0.131 4.131 21 C -0.180 4.180 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.135 4.135 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.244 0.756 33 H 0.169 0.831 34 H 0.039 0.961 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.111 0.889 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.687 6.438 24.437 25.903 hybrid contribution -1.160 -0.280 -1.043 1.585 sum -6.848 6.158 23.394 25.142 Atomic orbital electron populations 1.21678 0.94002 1.02837 1.02154 1.21701 0.97456 0.94094 1.03462 1.21406 0.79204 0.98649 1.01151 1.46107 1.07810 1.08865 1.74978 1.22111 0.92160 0.83479 0.74581 1.90510 1.71184 1.31934 1.50424 1.21352 0.87432 0.94842 0.95131 1.60585 1.62869 1.05071 1.00902 1.21983 0.96054 0.99812 0.88566 1.21213 1.00340 0.97671 0.93071 1.19486 0.95916 0.95548 0.93929 1.21473 1.29864 1.12159 0.93180 0.94584 1.25956 0.97519 0.98594 0.96941 1.70060 1.47324 1.38118 1.03553 0.85719 0.79564 0.79456 0.78270 1.19231 1.20754 1.17643 1.21428 1.01379 0.91944 0.98380 1.21991 1.03623 0.97398 0.94990 1.21494 1.00662 0.96788 0.96144 1.21535 1.00224 0.94777 0.98930 1.21556 1.02305 0.99527 0.90152 0.91096 0.91899 0.93125 0.91416 0.89726 0.91813 0.93633 0.75608 0.83056 0.96073 0.91293 0.92535 0.92652 0.96818 0.96849 0.92492 0.93737 0.90120 0.89711 0.92338 0.91126 0.91647 0.89548 0.93731 0.88909 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.13 -1.88 6.05 30.59 0.19 -1.69 16 3 C 0.12 2.36 5.68 86.38 0.49 2.85 16 4 N -0.72 -14.74 5.23 -463.06 -2.42 -17.16 16 5 C 0.49 12.38 4.21 87.66 0.37 12.75 16 6 O -0.56 -17.81 12.96 -3.02 -0.04 -17.84 16 7 C 0.11 2.39 0.64 2.78 0.00 2.39 16 8 N -0.66 -15.80 5.99 -473.88 -2.84 -18.64 16 9 C 0.06 2.01 4.99 86.30 0.43 2.44 16 10 C -0.08 -3.22 5.44 30.59 0.17 -3.06 16 11 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 12 C -0.53 -30.71 9.66 25.60 0.25 -30.46 16 13 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 14 C 0.01 0.40 5.47 84.66 0.46 0.86 16 15 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 16 Si 0.95 45.18 27.47 68.60 1.88 47.07 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 20 C -0.09 -2.32 4.23 30.59 0.13 -2.19 16 21 C -0.14 -3.32 5.63 30.59 0.17 -3.15 16 22 C -0.11 -2.04 5.92 30.59 0.18 -1.86 16 23 C -0.12 -1.96 5.70 30.60 0.17 -1.78 16 24 C -0.10 -1.63 5.01 30.60 0.15 -1.48 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.41 6.42 7.18 -92.71 -0.67 5.76 16 33 H 0.35 6.94 7.44 -89.69 -0.67 6.28 16 34 H 0.02 0.68 7.13 -2.39 -0.02 0.67 16 35 H 0.07 2.26 6.08 -2.38 -0.01 2.25 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.01 0.64 7.20 -2.38 -0.02 0.62 16 39 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.04 1.30 6.29 -2.38 -0.02 1.28 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 2.42 4.94 -3.02 -0.01 2.41 16 44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 48 H 0.04 0.91 7.03 -2.39 -0.02 0.89 16 49 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -69.75 376.37 0.39 -69.35 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.49 Total: 22.92 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 4.00 Total: -26.05 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -4.96 Total: -95.45 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.04 Total: -17.84 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -69.75 0.39 -69.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085864136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.422 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds