Wall clock time and date at job start Tue Mar 31 2020 08:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46974 * 119.99774 * 2 1 3 5 5 C 1.52996 * 109.47165 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 7 7 C 1.52997 * 109.47415 * 59.99860 * 6 5 4 8 8 H 1.09001 * 109.46922 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47194 * 59.99942 * 7 6 5 10 10 C 1.34778 * 119.99951 * 85.00164 * 9 7 6 11 11 O 1.21589 * 119.99852 * 359.97438 * 10 9 7 12 12 N 1.34771 * 120.00399 * 180.02562 * 10 9 7 13 13 C 1.46493 * 120.00515 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47390 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47243 * 299.99878 * 14 13 12 16 16 C 1.52999 * 109.47199 * 59.99973 * 14 13 12 17 17 C 1.53003 * 109.47353 * 179.97438 * 14 13 12 18 18 C 1.50696 * 109.47251 * 179.97438 * 17 14 13 19 19 H 1.08001 * 120.00347 * 359.97438 * 18 17 14 20 20 C 1.37879 * 119.99770 * 180.02562 * 18 17 14 21 21 N 1.31514 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99940 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47044 * 59.99849 * 22 20 18 24 24 H 1.48496 * 109.47185 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47159 * 300.00269 * 22 20 18 26 26 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 27 27 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 29 29 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 30 30 H 1.09000 * 109.47140 * 60.00393 * 4 2 1 31 31 H 1.09001 * 109.47375 * 300.00376 * 4 2 1 32 32 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 34 34 H 1.09000 * 109.46986 * 299.99742 * 6 5 4 35 35 H 1.09001 * 109.47601 * 180.02562 * 6 5 4 36 36 H 0.96995 * 120.00444 * 264.99947 * 9 7 6 37 37 H 0.97007 * 119.99667 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.47063 * 299.99913 * 13 12 10 39 39 H 1.09002 * 109.47508 * 59.99860 * 13 12 10 40 40 H 1.09002 * 109.47169 * 59.99827 * 15 14 13 41 41 H 1.09006 * 109.47139 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.47430 * 299.99904 * 15 14 13 43 43 H 1.09003 * 109.46983 * 60.00034 * 16 14 13 44 44 H 1.09006 * 109.47275 * 179.97438 * 16 14 13 45 45 H 1.08993 * 109.46980 * 300.00128 * 16 14 13 46 46 H 1.09003 * 109.47244 * 300.00220 * 17 14 13 47 47 H 1.09001 * 109.46868 * 60.00372 * 17 14 13 48 48 H 0.97003 * 119.99983 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.47839 * 60.00073 * 26 2 1 50 50 H 1.09000 * 109.47160 * 299.99635 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7204 -1.2489 8 1 3.9339 -1.2343 -2.1388 9 7 4.0584 0.6610 -1.2486 10 6 5.2803 0.9442 -1.7416 11 8 5.9780 0.0532 -2.1862 12 7 5.7294 2.2149 -1.7410 13 6 7.0574 2.5229 -2.2773 14 6 7.3194 4.0256 -2.1589 15 6 6.2589 4.7922 -2.9516 16 6 7.2550 4.4401 -0.6875 17 6 8.7066 4.3471 -2.7185 18 6 8.9645 5.8273 -2.6024 19 1 8.2138 6.4742 -2.1728 20 6 10.1583 6.3559 -3.0455 21 7 11.0722 5.5684 -3.5690 22 14 10.4782 8.1907 -2.9009 23 1 10.4158 8.5930 -1.4728 24 1 11.8246 8.5027 -3.4442 25 1 9.4487 8.9349 -3.6702 26 6 2.0400 -0.7212 -1.2493 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 1.6766 -0.2074 2.1392 32 1 3.9333 -1.2348 2.1393 33 1 3.9329 0.3071 1.2497 34 1 3.7175 -2.4693 0.0002 35 1 5.1705 -1.4416 0.0007 36 1 3.5020 1.3718 -0.8937 37 1 5.1729 2.9258 -1.3860 38 1 7.8129 1.9763 -1.7129 39 1 7.1032 2.2280 -3.3257 40 1 5.2708 4.5631 -2.5525 41 1 6.4454 5.8629 -2.8668 42 1 6.3048 4.4970 -3.9998 43 1 8.0106 3.8938 -0.1228 44 1 7.4421 5.5106 -0.6030 45 1 6.2670 4.2110 -0.2884 46 1 9.4620 3.8009 -2.1534 47 1 8.7529 4.0518 -3.7667 48 1 11.9122 5.9403 -3.8804 49 1 1.6768 -0.2075 -2.1392 50 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351023884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:23 Heat of formation + Delta-G solvation = -75.584521 kcal Electronic energy + Delta-G solvation = -24926.612995 eV Core-core repulsion = 21565.963670 eV Total energy + Delta-G solvation = -3360.649325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37086 -38.72914 -37.02701 -34.05253 -33.53593 -32.39259 -31.94823 -29.84287 -27.06208 -26.69478 -26.48549 -25.93199 -23.10381 -22.60340 -21.57399 -20.99213 -19.36399 -18.61541 -17.64869 -16.36745 -15.99344 -15.73434 -15.24130 -14.90136 -14.56541 -14.40598 -14.21523 -13.94578 -13.65344 -13.45683 -13.01732 -12.77359 -12.72898 -12.40773 -12.37394 -12.12373 -12.06611 -12.02868 -11.78597 -11.25005 -11.12451 -10.98608 -10.85922 -10.79843 -10.60981 -10.44675 -10.36684 -10.27112 -10.24008 -9.94843 -9.84466 -9.17435 -9.05844 -8.91434 -8.48647 -8.34031 -5.98167 -3.99488 2.93902 3.32828 3.38308 3.39471 3.48475 4.37663 4.41045 4.44454 4.45595 4.52401 4.85585 4.93593 5.14530 5.17669 5.19348 5.33465 5.37181 5.37868 5.45075 5.52166 5.54097 5.63859 5.67829 5.75592 5.77991 5.79221 5.91888 5.95938 6.04914 6.12633 6.17207 6.20803 6.25813 6.32629 6.44936 6.63283 6.64112 6.65287 6.85271 7.09195 7.10101 7.12122 7.20190 7.66390 7.79262 8.00587 8.26547 8.42547 8.87648 9.05176 9.63397 11.13273 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.030760 B = 0.002745 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.049286 B =10197.442591 C =10477.153698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.166 3.834 8 H 0.087 0.913 9 N -0.744 5.744 10 C 0.699 3.301 11 O -0.595 6.595 12 N -0.738 5.738 13 C 0.148 3.852 14 C -0.072 4.072 15 C -0.126 4.126 16 C -0.125 4.125 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.122 4.122 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.391 0.609 37 H 0.392 0.608 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.260 0.740 49 H 0.068 0.932 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.317 -11.394 8.646 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.170 4.170 7 C 0.060 3.940 8 H 0.105 0.895 9 N -0.401 5.401 10 C 0.399 3.601 11 O -0.474 6.474 12 N -0.393 5.393 13 C 0.024 3.976 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.160 4.160 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.226 0.774 37 H 0.227 0.773 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.461 -12.219 8.134 25.182 hybrid contribution -0.181 1.706 0.382 1.757 sum -20.642 -10.514 8.516 24.681 Atomic orbital electron populations 1.21833 0.95103 1.01819 1.01717 1.21133 0.95500 0.99541 0.95012 0.91397 1.21610 0.95740 1.00556 0.97200 1.21484 0.95141 1.01192 0.97737 1.21943 1.01667 0.98891 0.94543 1.20713 0.92756 0.81782 0.98727 0.89530 1.45251 1.17409 1.09640 1.67808 1.16050 0.81584 0.83538 0.78911 1.90904 1.57198 1.45970 1.53282 1.45376 1.20305 1.06693 1.66967 1.21459 0.81230 0.96568 0.98330 1.20906 0.99688 0.90811 0.95859 1.21746 0.95618 1.01608 0.99312 1.21746 0.98588 1.02570 0.95374 1.19084 0.88274 0.96702 0.96057 1.21147 1.00948 0.92838 1.40026 0.92338 1.25013 0.96385 0.97579 0.95510 1.69956 1.07147 1.34876 1.41418 0.86716 0.77316 0.85987 0.78295 1.20349 1.21404 1.20343 1.21909 0.94272 1.01714 0.98063 0.92672 0.92701 0.92646 0.91971 0.92140 0.92189 0.91888 0.91416 0.91188 0.77440 0.77312 0.92112 0.92119 0.95340 0.91544 0.93393 0.93406 0.91543 0.95341 0.96326 0.96331 0.92988 0.91292 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 2 C -0.09 -0.60 2.55 -90.62 -0.23 -0.83 16 3 H 0.07 0.45 6.50 -51.93 -0.34 0.11 16 4 C -0.11 -0.76 5.20 -26.73 -0.14 -0.90 16 5 C -0.12 -0.99 5.77 -26.73 -0.15 -1.14 16 6 C -0.13 -1.28 5.60 -26.73 -0.15 -1.43 16 7 C 0.17 1.66 2.78 -67.91 -0.19 1.47 16 8 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 9 N -0.74 -8.25 4.24 -58.65 -0.25 -8.49 16 10 C 0.70 10.83 8.53 -86.92 -0.74 10.08 16 11 O -0.60 -11.77 16.01 5.29 0.08 -11.69 16 12 N -0.74 -10.98 4.96 -65.23 -0.32 -11.30 16 13 C 0.15 2.68 4.56 -4.05 -0.02 2.66 16 14 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 16 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 17 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 18 C -0.51 -13.62 7.65 -34.44 -0.26 -13.88 16 19 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.12 -0.88 4.89 -26.70 -0.13 -1.01 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.59 7.60 -51.93 -0.39 0.19 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.39 3.44 6.88 -40.82 -0.28 3.16 16 37 H 0.39 4.90 6.18 -40.82 -0.25 4.65 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 41 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 45 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -31.07 378.18 -9.70 -40.77 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -9.26 Total: 3.11 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.37 Total: -8.50 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.16 Total: -45.62 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.07 -9.70 -40.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351023884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.818 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds