Wall clock time and date at job start Tue Mar 31 2020 08:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46974 * 119.99774 * 2 1 3 5 5 C 1.52996 * 109.47165 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 7 7 C 1.52997 * 109.47415 * 59.99860 * 6 5 4 8 8 H 1.09001 * 109.46922 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47194 * 59.99942 * 7 6 5 10 10 C 1.34778 * 119.99951 * 85.00164 * 9 7 6 11 11 O 1.21589 * 119.99852 * 359.97438 * 10 9 7 12 12 N 1.34771 * 120.00399 * 180.02562 * 10 9 7 13 13 C 1.46493 * 120.00515 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47390 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47243 * 299.99878 * 14 13 12 16 16 C 1.52999 * 109.47199 * 59.99973 * 14 13 12 17 17 C 1.53003 * 109.47353 * 179.97438 * 14 13 12 18 18 C 1.50696 * 109.47251 * 179.97438 * 17 14 13 19 19 H 1.08001 * 120.00347 * 359.97438 * 18 17 14 20 20 C 1.37879 * 119.99770 * 180.02562 * 18 17 14 21 21 N 1.31514 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99940 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47044 * 59.99849 * 22 20 18 24 24 H 1.48496 * 109.47185 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47159 * 300.00269 * 22 20 18 26 26 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 27 27 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 29 29 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 30 30 H 1.09000 * 109.47140 * 60.00393 * 4 2 1 31 31 H 1.09001 * 109.47375 * 300.00376 * 4 2 1 32 32 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 34 34 H 1.09000 * 109.46986 * 299.99742 * 6 5 4 35 35 H 1.09001 * 109.47601 * 180.02562 * 6 5 4 36 36 H 0.96995 * 120.00444 * 264.99947 * 9 7 6 37 37 H 0.97007 * 119.99667 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.47063 * 299.99913 * 13 12 10 39 39 H 1.09002 * 109.47508 * 59.99860 * 13 12 10 40 40 H 1.09002 * 109.47169 * 59.99827 * 15 14 13 41 41 H 1.09006 * 109.47139 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.47430 * 299.99904 * 15 14 13 43 43 H 1.09003 * 109.46983 * 60.00034 * 16 14 13 44 44 H 1.09006 * 109.47275 * 179.97438 * 16 14 13 45 45 H 1.08993 * 109.46980 * 300.00128 * 16 14 13 46 46 H 1.09003 * 109.47244 * 300.00220 * 17 14 13 47 47 H 1.09001 * 109.46868 * 60.00372 * 17 14 13 48 48 H 0.97003 * 119.99983 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.47839 * 60.00073 * 26 2 1 50 50 H 1.09000 * 109.47160 * 299.99635 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7204 -1.2489 8 1 3.9339 -1.2343 -2.1388 9 7 4.0584 0.6610 -1.2486 10 6 5.2803 0.9442 -1.7416 11 8 5.9780 0.0532 -2.1862 12 7 5.7294 2.2149 -1.7410 13 6 7.0574 2.5229 -2.2773 14 6 7.3194 4.0256 -2.1589 15 6 6.2589 4.7922 -2.9516 16 6 7.2550 4.4401 -0.6875 17 6 8.7066 4.3471 -2.7185 18 6 8.9645 5.8273 -2.6024 19 1 8.2138 6.4742 -2.1728 20 6 10.1583 6.3559 -3.0455 21 7 11.0722 5.5684 -3.5690 22 14 10.4782 8.1907 -2.9009 23 1 10.4158 8.5930 -1.4728 24 1 11.8246 8.5027 -3.4442 25 1 9.4487 8.9349 -3.6702 26 6 2.0400 -0.7212 -1.2493 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 1.6766 -0.2074 2.1392 32 1 3.9333 -1.2348 2.1393 33 1 3.9329 0.3071 1.2497 34 1 3.7175 -2.4693 0.0002 35 1 5.1705 -1.4416 0.0007 36 1 3.5020 1.3718 -0.8937 37 1 5.1729 2.9258 -1.3860 38 1 7.8129 1.9763 -1.7129 39 1 7.1032 2.2280 -3.3257 40 1 5.2708 4.5631 -2.5525 41 1 6.4454 5.8629 -2.8668 42 1 6.3048 4.4970 -3.9998 43 1 8.0106 3.8938 -0.1228 44 1 7.4421 5.5106 -0.6030 45 1 6.2670 4.2110 -0.2884 46 1 9.4620 3.8009 -2.1534 47 1 8.7529 4.0518 -3.7667 48 1 11.9122 5.9403 -3.8804 49 1 1.6768 -0.2075 -2.1392 50 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351023884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:23 Heat of formation + Delta-G solvation = -93.841136 kcal Electronic energy + Delta-G solvation = -24927.404661 eV Core-core repulsion = 21565.963670 eV Total energy + Delta-G solvation = -3361.440991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44631 -39.75854 -38.50312 -35.21597 -34.99657 -33.90319 -32.93927 -30.71792 -29.01665 -27.94868 -27.40137 -27.23551 -24.90246 -23.40939 -22.39976 -22.03325 -20.41766 -19.76927 -19.08465 -18.35403 -17.09922 -16.70963 -16.51829 -16.25395 -15.82562 -15.48597 -15.41657 -15.02595 -14.78307 -14.58510 -14.33468 -14.18919 -13.92357 -13.78624 -13.31675 -13.09660 -13.05169 -12.82885 -12.74665 -12.66700 -12.57455 -12.35306 -12.31595 -12.21291 -11.98974 -11.84458 -11.52187 -11.40120 -11.35820 -11.07182 -10.96734 -10.93289 -10.84905 -10.49687 -10.27207 -9.68630 -8.12786 -6.20826 1.43074 1.45376 1.52551 1.78168 2.21858 2.45269 3.21488 3.38239 3.77490 3.81372 3.86177 3.99568 4.10816 4.19894 4.24224 4.27354 4.49854 4.54538 4.58174 4.70503 4.73744 4.75104 4.78611 4.81746 4.88844 4.98161 5.02040 5.06560 5.11729 5.13542 5.14238 5.18115 5.30473 5.39304 5.41955 5.44324 5.45749 5.50607 5.51233 5.55324 5.58688 5.61156 5.69908 5.81878 5.90911 6.07216 6.32065 6.94084 7.17092 7.46866 7.65795 8.99674 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.030760 B = 0.002745 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.049286 B =10197.442591 C =10477.153698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.129 4.129 7 C 0.162 3.838 8 H 0.061 0.939 9 N -0.723 5.723 10 C 0.697 3.303 11 O -0.642 6.642 12 N -0.725 5.725 13 C 0.163 3.837 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.040 3.960 18 C -0.514 4.514 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.959 3.041 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.266 1.266 26 C -0.112 4.112 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.407 0.593 37 H 0.409 0.591 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.069 0.931 46 H -0.015 1.015 47 H -0.015 1.015 48 H 0.259 0.741 49 H 0.072 0.928 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.701 -10.280 10.223 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.168 4.168 7 C 0.057 3.943 8 H 0.080 0.920 9 N -0.380 5.380 10 C 0.397 3.603 11 O -0.524 6.524 12 N -0.382 5.382 13 C 0.038 3.962 14 C -0.064 4.064 15 C -0.177 4.177 16 C -0.177 4.177 17 C 0.002 3.998 18 C -0.552 4.552 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.581 5.581 22 Si 0.784 3.216 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.191 1.191 26 C -0.150 4.150 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.244 0.756 37 H 0.246 0.754 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.003 0.997 47 H 0.004 0.996 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.922 -11.080 9.749 28.108 hybrid contribution 0.863 1.256 -0.107 1.528 sum -23.059 -9.823 9.642 26.855 Atomic orbital electron populations 1.21798 0.94055 1.02254 1.02065 1.21127 0.96275 0.99344 0.94207 0.91266 1.21579 0.94028 1.01250 0.97728 1.21456 0.96618 1.00319 0.96833 1.21897 0.99497 1.00100 0.95262 1.20836 0.94869 0.80729 0.97839 0.92029 1.45096 1.15814 1.10784 1.66312 1.16214 0.82420 0.82943 0.78751 1.90881 1.58841 1.47330 1.55313 1.45014 1.19145 1.07199 1.66820 1.21014 0.82565 0.95615 0.97023 1.20699 0.96894 0.91601 0.97170 1.21676 0.96975 1.00449 0.98598 1.21675 1.00655 1.01587 0.93770 1.18970 0.91116 0.95835 0.93866 1.21563 1.01026 0.93717 1.38864 0.90844 1.25965 0.96389 1.02528 0.95380 1.70122 1.07735 1.37139 1.43062 0.85591 0.77066 0.80101 0.78825 1.19112 1.21756 1.19078 1.21863 0.91465 1.02848 0.98831 0.92238 0.92226 0.92470 0.91238 0.91232 0.91990 0.92777 0.89954 0.94656 0.75558 0.75402 0.94179 0.94099 0.91189 0.92521 0.94546 0.94615 0.92515 0.91214 0.99666 0.99638 0.93183 0.90950 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.19 71.98 0.66 -0.47 16 2 C -0.09 -0.88 2.55 -10.79 -0.03 -0.91 16 3 H 0.07 0.67 6.50 -2.39 -0.02 0.65 16 4 C -0.11 -1.13 5.20 30.59 0.16 -0.97 16 5 C -0.11 -1.71 5.77 30.59 0.18 -1.54 16 6 C -0.13 -2.43 5.60 30.59 0.17 -2.25 16 7 C 0.16 3.10 2.78 45.01 0.13 3.23 16 8 H 0.06 1.51 7.58 -2.39 -0.02 1.50 16 9 N -0.72 -15.01 4.24 -457.74 -1.94 -16.94 16 10 C 0.70 21.32 8.53 179.06 1.53 22.85 16 11 O -0.64 -26.19 16.01 -4.00 -0.06 -26.25 16 12 N -0.73 -20.71 4.96 -478.56 -2.37 -23.09 16 13 C 0.16 6.04 4.56 86.38 0.39 6.43 16 14 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 15 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 16 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 17 C 0.04 2.05 4.04 29.85 0.12 2.17 16 18 C -0.51 -27.65 7.65 25.60 0.20 -27.45 16 19 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 20 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 21 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 22 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C -0.11 -1.34 4.89 30.61 0.15 -1.19 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.90 7.60 -2.39 -0.02 0.88 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.41 6.00 6.88 -92.71 -0.64 5.37 16 37 H 0.41 8.90 6.18 -92.70 -0.57 8.32 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 41 H 0.06 2.03 6.62 -2.38 -0.02 2.01 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 2.03 6.62 -2.38 -0.02 2.02 16 45 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 46 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 47 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 48 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -70.84 378.18 2.88 -67.97 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.30 Total: 19.30 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.25 Total: -9.31 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -4.03 Total: -97.40 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.06 Total: -26.25 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.84 2.88 -67.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351023884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.874 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds