Wall clock time and date at job start Tue Mar 31 2020 08:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47730 * 2 1 4 4 C 1.53000 * 109.46968 * 239.99791 * 2 1 3 5 5 C 1.53002 * 109.47290 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.47250 * 60.00056 * 5 4 2 7 7 C 1.53002 * 109.47085 * 300.00520 * 6 5 4 8 8 H 1.09000 * 109.47004 * 299.99900 * 7 6 5 9 9 C 1.52996 * 109.47102 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.47501 * 59.99634 * 7 6 5 11 11 H 1.09000 * 109.47147 * 59.99732 * 10 7 6 12 12 N 1.46492 * 109.47210 * 180.02562 * 10 7 6 13 13 C 1.34783 * 119.99899 * 204.99785 * 12 10 7 14 14 O 1.21586 * 119.99728 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99993 * 179.97438 * 13 12 10 16 16 C 1.46496 * 120.00012 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47487 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.46623 * 299.99762 * 17 16 15 19 19 C 1.52997 * 109.47269 * 59.99598 * 17 16 15 20 20 C 1.50698 * 109.47150 * 179.97438 * 17 16 15 21 21 H 1.07993 * 120.00472 * 359.97438 * 20 17 16 22 22 C 1.37882 * 119.99554 * 179.97438 * 20 17 16 23 23 N 1.31515 * 120.00420 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99716 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47049 * 89.99950 * 24 22 20 26 26 H 1.48499 * 109.47170 * 209.99777 * 24 22 20 27 27 H 1.48502 * 109.47245 * 329.99617 * 24 22 20 28 28 H 1.09002 * 109.46642 * 299.99870 * 1 2 3 29 29 H 1.08998 * 109.47286 * 60.00032 * 1 2 3 30 30 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46982 * 60.00484 * 4 2 1 32 32 H 1.09000 * 109.47372 * 299.99941 * 4 2 1 33 33 H 1.09000 * 109.47147 * 300.00588 * 5 4 2 34 34 H 1.09000 * 109.47392 * 180.02562 * 5 4 2 35 35 H 1.08999 * 109.47251 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.46720 * 59.99732 * 6 5 4 37 37 H 1.09000 * 109.47254 * 299.99924 * 9 7 6 38 38 H 1.08999 * 109.47098 * 59.99857 * 9 7 6 39 39 H 1.09000 * 109.46936 * 179.97438 * 9 7 6 40 40 H 0.96997 * 120.00502 * 24.99720 * 12 10 7 41 41 H 0.97004 * 120.00071 * 0.02562 * 15 13 12 42 42 H 1.09001 * 109.47464 * 59.99570 * 16 15 13 43 43 H 1.09002 * 109.47021 * 299.99962 * 16 15 13 44 44 H 1.09001 * 109.47002 * 179.97438 * 18 17 16 45 45 H 1.08993 * 109.46955 * 300.00075 * 18 17 16 46 46 H 1.09000 * 109.47050 * 59.99904 * 18 17 16 47 47 H 1.09000 * 109.47140 * 300.00547 * 19 17 16 48 48 H 1.09001 * 109.47230 * 59.99691 * 19 17 16 49 49 H 1.09001 * 109.47375 * 180.02562 * 19 17 16 50 50 H 0.97001 * 120.00306 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2490 6 6 4.0795 -1.4435 0.0003 7 6 3.5695 -0.7223 1.2495 8 1 3.9332 0.3052 1.2498 9 6 4.0785 -1.4442 2.4987 10 6 2.0395 -0.7217 1.2493 11 1 1.6757 -1.7492 1.2490 12 7 1.5512 -0.0306 2.4451 13 6 0.3290 -0.3158 2.9365 14 8 -0.3681 -1.1470 2.3874 15 7 -0.1200 0.3196 4.0369 16 6 -1.4483 0.0092 4.5713 17 6 -1.7108 0.8633 5.8132 18 6 -0.6507 0.5602 6.8740 19 6 -1.6461 2.3448 5.4364 20 6 -3.0774 0.5444 6.3625 21 1 -3.6970 -0.1933 5.8744 22 6 -3.5368 1.1946 7.4883 23 7 -2.7822 2.0927 8.0830 24 14 -5.2311 0.7998 8.1687 25 1 -5.1234 -0.3058 9.1543 26 1 -5.7899 2.0038 8.8346 27 1 -6.1268 0.3877 7.0583 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6766 -0.2074 -2.1392 32 1 1.6766 -1.7490 -1.2492 33 1 3.9337 0.3056 -1.2487 34 1 3.9333 -1.2354 -2.1392 35 1 5.1695 -1.4436 0.0007 36 1 3.7157 -2.4710 0.0001 37 1 3.7145 -2.4716 2.4983 38 1 5.1685 -1.4450 2.4992 39 1 3.7155 -0.9301 3.3887 40 1 2.1075 0.6323 2.8834 41 1 0.4363 0.9825 4.4752 42 1 -1.4946 -1.0463 4.8394 43 1 -2.2035 0.2256 3.8157 44 1 -0.8374 1.1690 7.7587 45 1 -0.6968 -0.4952 7.1425 46 1 0.3376 0.7911 6.4765 47 1 -0.6579 2.5757 5.0388 48 1 -2.4013 2.5607 4.6806 49 1 -1.8327 2.9533 6.3213 50 1 -3.1053 2.5498 8.8752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458480047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:59 Heat of formation + Delta-G solvation = -66.808838 kcal Electronic energy + Delta-G solvation = -25562.993379 eV Core-core repulsion = 22202.724596 eV Total energy + Delta-G solvation = -3360.268783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32035 -38.50601 -36.32507 -33.98592 -33.51668 -33.13902 -31.06193 -30.07483 -26.52140 -26.30652 -25.69293 -25.43493 -24.52640 -21.93569 -20.86469 -20.27124 -20.08315 -18.73065 -17.88674 -16.29423 -15.78204 -15.45727 -14.90586 -14.73087 -14.57218 -14.33132 -13.88686 -13.77238 -13.44560 -12.94921 -12.84338 -12.67842 -12.51679 -12.25870 -12.17275 -12.13707 -11.82549 -11.36183 -11.26023 -11.16703 -11.11061 -10.86254 -10.84401 -10.67247 -10.58727 -10.47155 -10.35099 -10.19733 -10.17875 -9.60526 -9.59305 -9.26214 -8.76117 -8.74601 -8.38507 -8.11176 -5.99859 -4.09617 3.18304 3.29899 3.36805 3.41523 3.73862 4.40575 4.43667 4.54590 4.62633 4.85489 4.90509 5.00829 5.23743 5.25682 5.26935 5.29313 5.34095 5.53105 5.56861 5.73134 5.77329 5.80391 5.89680 5.93303 6.02956 6.04454 6.07514 6.18977 6.23979 6.26233 6.40839 6.41213 6.54789 6.65717 6.83331 6.85128 6.86113 6.95829 7.06744 7.17264 7.37214 7.49671 7.59111 7.72399 8.04229 8.15785 8.41675 8.58147 8.90628 9.15891 9.56055 11.01539 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.003171 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.526176 B = 8828.297839 C = 9225.006318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.110 4.110 7 C -0.098 4.098 8 H 0.073 0.927 9 C -0.146 4.146 10 C 0.176 3.824 11 H 0.086 0.914 12 N -0.748 5.748 13 C 0.698 3.302 14 O -0.595 6.595 15 N -0.736 5.736 16 C 0.152 3.848 17 C 0.056 3.944 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.505 4.505 21 H 0.057 0.943 22 C 0.066 3.934 23 N -0.887 5.887 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.390 0.610 41 H 0.392 0.608 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.084 0.916 45 H 0.026 0.974 46 H 0.005 0.995 47 H 0.005 0.995 48 H 0.026 0.974 49 H 0.084 0.916 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.148 -2.540 -14.214 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.148 4.148 7 C -0.117 4.117 8 H 0.091 0.909 9 C -0.204 4.204 10 C 0.070 3.930 11 H 0.104 0.896 12 N -0.403 5.403 13 C 0.398 3.602 14 O -0.474 6.474 15 N -0.390 5.390 16 C 0.029 3.971 17 C 0.056 3.944 18 C -0.187 4.187 19 C -0.187 4.187 20 C -0.543 4.543 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.525 5.525 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.223 0.777 41 H 0.226 0.774 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.024 0.976 47 H 0.024 0.976 48 H 0.045 0.955 49 H 0.103 0.897 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.440 -3.196 -14.528 20.731 hybrid contribution -0.403 0.513 0.850 1.072 sum 14.037 -2.683 -13.677 19.781 Atomic orbital electron populations 1.21824 0.93992 1.02706 1.00821 1.21556 0.96880 0.99278 0.94320 0.91642 1.21583 0.94995 1.01013 0.97481 1.21569 0.95979 1.00665 0.97630 1.21549 1.00173 0.99552 0.93541 1.21404 0.94498 1.00281 0.95563 0.90906 1.21810 1.00401 1.00811 0.97334 1.20790 0.91901 0.97012 0.83272 0.89618 1.45191 1.17626 1.46181 1.31336 1.16023 0.81397 0.81825 0.80912 1.90881 1.57204 1.37305 1.61990 1.45523 1.20700 1.44173 1.28610 1.21533 0.79981 0.99350 0.96234 1.18352 0.95339 0.91459 0.89293 1.21812 0.94605 0.99965 1.02300 1.21809 0.95813 0.99740 1.01299 1.21003 0.99967 1.22445 1.10930 0.92434 1.24878 0.97294 0.94844 0.96510 1.69807 1.36427 1.25967 1.20335 0.86579 0.84451 0.77734 0.79156 1.20735 1.21302 1.19887 0.92230 0.94219 0.91900 0.91965 0.91783 0.92051 0.92039 0.91740 0.91680 0.92570 0.92789 0.92297 0.77653 0.77377 0.93111 0.93109 0.89710 0.95516 0.97580 0.97582 0.95512 0.89724 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.72 37.16 0.29 -1.63 16 2 C -0.10 -1.13 2.43 -90.62 -0.22 -1.35 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.05 5.20 -26.73 -0.14 -1.18 16 5 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 6 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 7 C -0.10 -0.87 2.30 -90.62 -0.21 -1.08 16 8 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 9 C -0.15 -1.31 9.03 37.16 0.34 -0.97 16 10 C 0.18 2.05 1.63 -67.93 -0.11 1.94 16 11 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 12 N -0.75 -9.69 4.28 -58.67 -0.25 -9.94 16 13 C 0.70 12.14 6.92 -86.91 -0.60 11.54 16 14 O -0.59 -12.37 13.46 5.29 0.07 -12.30 16 15 N -0.74 -13.20 4.96 -65.23 -0.32 -13.53 16 16 C 0.15 3.28 4.50 -4.04 -0.02 3.27 16 17 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 18 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 19 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 20 C -0.50 -13.34 8.01 -34.44 -0.28 -13.62 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 23 N -0.89 -23.75 9.35 55.43 0.52 -23.23 16 24 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.06 0.99 5.77 -51.93 -0.30 0.69 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 40 H 0.39 4.18 8.40 -40.82 -0.34 3.84 16 41 H 0.39 6.37 6.18 -40.82 -0.25 6.12 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 50 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -28.20 370.54 -9.53 -37.73 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -9.29 Total: 7.36 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.82 Total: -7.53 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.06 Total: -46.69 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.20 -9.53 -37.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458480047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.075 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds