Wall clock time and date at job start Tue Mar 31 2020 08:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47730 * 2 1 4 4 C 1.53000 * 109.46968 * 239.99791 * 2 1 3 5 5 C 1.53002 * 109.47290 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.47250 * 60.00056 * 5 4 2 7 7 C 1.53002 * 109.47085 * 300.00520 * 6 5 4 8 8 H 1.09000 * 109.47004 * 299.99900 * 7 6 5 9 9 C 1.52996 * 109.47102 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.47501 * 59.99634 * 7 6 5 11 11 H 1.09000 * 109.47147 * 59.99732 * 10 7 6 12 12 N 1.46492 * 109.47210 * 180.02562 * 10 7 6 13 13 C 1.34783 * 119.99899 * 204.99785 * 12 10 7 14 14 O 1.21586 * 119.99728 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99993 * 179.97438 * 13 12 10 16 16 C 1.46496 * 120.00012 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47487 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.46623 * 299.99762 * 17 16 15 19 19 C 1.52997 * 109.47269 * 59.99598 * 17 16 15 20 20 C 1.50698 * 109.47150 * 179.97438 * 17 16 15 21 21 H 1.07993 * 120.00472 * 359.97438 * 20 17 16 22 22 C 1.37882 * 119.99554 * 179.97438 * 20 17 16 23 23 N 1.31515 * 120.00420 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99716 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47049 * 89.99950 * 24 22 20 26 26 H 1.48499 * 109.47170 * 209.99777 * 24 22 20 27 27 H 1.48502 * 109.47245 * 329.99617 * 24 22 20 28 28 H 1.09002 * 109.46642 * 299.99870 * 1 2 3 29 29 H 1.08998 * 109.47286 * 60.00032 * 1 2 3 30 30 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46982 * 60.00484 * 4 2 1 32 32 H 1.09000 * 109.47372 * 299.99941 * 4 2 1 33 33 H 1.09000 * 109.47147 * 300.00588 * 5 4 2 34 34 H 1.09000 * 109.47392 * 180.02562 * 5 4 2 35 35 H 1.08999 * 109.47251 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.46720 * 59.99732 * 6 5 4 37 37 H 1.09000 * 109.47254 * 299.99924 * 9 7 6 38 38 H 1.08999 * 109.47098 * 59.99857 * 9 7 6 39 39 H 1.09000 * 109.46936 * 179.97438 * 9 7 6 40 40 H 0.96997 * 120.00502 * 24.99720 * 12 10 7 41 41 H 0.97004 * 120.00071 * 0.02562 * 15 13 12 42 42 H 1.09001 * 109.47464 * 59.99570 * 16 15 13 43 43 H 1.09002 * 109.47021 * 299.99962 * 16 15 13 44 44 H 1.09001 * 109.47002 * 179.97438 * 18 17 16 45 45 H 1.08993 * 109.46955 * 300.00075 * 18 17 16 46 46 H 1.09000 * 109.47050 * 59.99904 * 18 17 16 47 47 H 1.09000 * 109.47140 * 300.00547 * 19 17 16 48 48 H 1.09001 * 109.47230 * 59.99691 * 19 17 16 49 49 H 1.09001 * 109.47375 * 180.02562 * 19 17 16 50 50 H 0.97001 * 120.00306 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2490 6 6 4.0795 -1.4435 0.0003 7 6 3.5695 -0.7223 1.2495 8 1 3.9332 0.3052 1.2498 9 6 4.0785 -1.4442 2.4987 10 6 2.0395 -0.7217 1.2493 11 1 1.6757 -1.7492 1.2490 12 7 1.5512 -0.0306 2.4451 13 6 0.3290 -0.3158 2.9365 14 8 -0.3681 -1.1470 2.3874 15 7 -0.1200 0.3196 4.0369 16 6 -1.4483 0.0092 4.5713 17 6 -1.7108 0.8633 5.8132 18 6 -0.6507 0.5602 6.8740 19 6 -1.6461 2.3448 5.4364 20 6 -3.0774 0.5444 6.3625 21 1 -3.6970 -0.1933 5.8744 22 6 -3.5368 1.1946 7.4883 23 7 -2.7822 2.0927 8.0830 24 14 -5.2311 0.7998 8.1687 25 1 -5.1234 -0.3058 9.1543 26 1 -5.7899 2.0038 8.8346 27 1 -6.1268 0.3877 7.0583 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6766 -0.2074 -2.1392 32 1 1.6766 -1.7490 -1.2492 33 1 3.9337 0.3056 -1.2487 34 1 3.9333 -1.2354 -2.1392 35 1 5.1695 -1.4436 0.0007 36 1 3.7157 -2.4710 0.0001 37 1 3.7145 -2.4716 2.4983 38 1 5.1685 -1.4450 2.4992 39 1 3.7155 -0.9301 3.3887 40 1 2.1075 0.6323 2.8834 41 1 0.4363 0.9825 4.4752 42 1 -1.4946 -1.0463 4.8394 43 1 -2.2035 0.2256 3.8157 44 1 -0.8374 1.1690 7.7587 45 1 -0.6968 -0.4952 7.1425 46 1 0.3376 0.7911 6.4765 47 1 -0.6579 2.5757 5.0388 48 1 -2.4013 2.5607 4.6806 49 1 -1.8327 2.9533 6.3213 50 1 -3.1053 2.5498 8.8752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458480047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:58 Heat of formation + Delta-G solvation = -82.389157 kcal Electronic energy + Delta-G solvation = -25563.668992 eV Core-core repulsion = 22202.724596 eV Total energy + Delta-G solvation = -3360.944396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.49582 -39.68170 -38.04175 -35.13249 -34.87090 -34.34067 -32.73376 -31.19114 -27.72725 -27.55469 -27.29106 -27.09158 -26.16292 -22.87081 -21.87167 -21.38636 -20.97947 -20.55609 -19.25093 -17.75498 -17.44540 -16.71549 -16.61526 -15.84141 -15.75248 -15.39273 -15.09557 -14.86343 -14.79055 -14.57044 -14.18177 -13.99267 -13.71822 -13.29872 -13.28888 -13.21361 -13.12212 -13.08423 -12.67325 -12.58997 -12.58085 -12.24224 -12.16536 -12.12474 -11.86899 -11.66398 -11.47532 -11.39604 -11.32328 -11.21985 -11.08786 -10.92121 -10.69452 -10.39241 -10.06392 -9.55723 -8.02059 -6.17630 1.42397 1.45063 1.53480 1.89688 2.32522 2.46596 3.21458 3.46801 3.62825 3.81451 3.93914 4.13917 4.23874 4.43461 4.44197 4.48927 4.50775 4.55155 4.57619 4.72424 4.75103 4.83747 4.88600 4.94546 5.00538 5.03201 5.04681 5.07023 5.11672 5.19534 5.21278 5.27346 5.29151 5.34263 5.35874 5.39698 5.43509 5.50179 5.59153 5.67540 5.68171 5.69881 5.76336 6.16102 6.17322 6.23284 6.44638 6.86796 7.26052 7.50136 7.76543 8.96888 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.003171 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.526176 B = 8828.297839 C = 9225.006318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 H 0.078 0.922 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.089 4.089 8 H 0.090 0.910 9 C -0.146 4.146 10 C 0.174 3.826 11 H 0.056 0.944 12 N -0.729 5.729 13 C 0.698 3.302 14 O -0.632 6.632 15 N -0.730 5.730 16 C 0.172 3.828 17 C 0.053 3.947 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.530 4.530 21 H 0.043 0.957 22 C 0.029 3.971 23 N -0.899 5.899 24 Si 0.945 3.055 25 H -0.279 1.279 26 H -0.282 1.282 27 H -0.276 1.276 28 H 0.030 0.970 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.406 0.594 41 H 0.403 0.597 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.062 0.938 45 H 0.016 0.984 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.016 0.984 49 H 0.062 0.938 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.511 -1.792 -15.195 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.115 4.115 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.147 4.147 7 C -0.108 4.108 8 H 0.109 0.891 9 C -0.203 4.203 10 C 0.069 3.931 11 H 0.075 0.925 12 N -0.384 5.384 13 C 0.398 3.602 14 O -0.513 6.513 15 N -0.386 5.386 16 C 0.047 3.953 17 C 0.052 3.948 18 C -0.176 4.176 19 C -0.176 4.176 20 C -0.568 4.568 21 H 0.061 0.939 22 C -0.171 4.171 23 N -0.538 5.538 24 Si 0.771 3.229 25 H -0.205 1.205 26 H -0.207 1.207 27 H -0.201 1.201 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.242 0.758 41 H 0.239 0.761 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.035 0.965 49 H 0.081 0.919 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.859 -2.425 -15.515 23.040 hybrid contribution -1.138 0.257 1.117 1.615 sum 15.722 -2.168 -14.398 21.428 Atomic orbital electron populations 1.21737 0.96393 1.00731 0.99928 1.21531 0.94640 1.00226 0.95128 0.90332 1.21560 0.96626 1.00102 0.96536 1.21549 0.94152 1.01518 0.98098 1.21564 1.01302 0.98920 0.92883 1.21378 0.91705 1.01504 0.96245 0.89143 1.21808 1.01618 0.99853 0.97012 1.20927 0.94100 0.95306 0.82744 0.92533 1.45045 1.16007 1.45966 1.31393 1.16135 0.82337 0.81287 0.80471 1.90866 1.58623 1.38930 1.62911 1.45220 1.19591 1.44704 1.29037 1.21036 0.81397 0.97819 0.95066 1.18340 0.94325 0.92134 0.89972 1.21646 0.95968 0.98796 1.01191 1.21642 0.97244 0.98666 1.00012 1.21288 1.01531 1.22514 1.11508 0.93858 1.25443 1.00057 0.94849 0.96746 1.69906 1.37339 1.26154 1.20377 0.85769 0.81110 0.77617 0.78377 1.20469 1.20733 1.20134 0.95112 0.92979 0.94418 0.91157 0.92903 0.90934 0.90664 0.89747 0.92514 0.93961 0.90847 0.93039 0.75838 0.76083 0.94994 0.95048 0.91912 0.96491 0.94491 0.94518 0.96515 0.91926 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 7.72 71.98 0.56 -3.16 16 2 C -0.10 -2.02 2.43 -10.79 -0.03 -2.05 16 3 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.11 -1.84 5.20 30.60 0.16 -1.68 16 5 C -0.12 -1.38 5.92 30.60 0.18 -1.20 16 6 C -0.11 -1.36 5.20 30.60 0.16 -1.20 16 7 C -0.09 -1.34 2.30 -10.79 -0.02 -1.36 16 8 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 9 C -0.15 -2.28 9.03 71.98 0.65 -1.63 16 10 C 0.17 3.87 1.63 45.00 0.07 3.95 16 11 H 0.06 1.62 7.58 -2.39 -0.02 1.61 16 12 N -0.73 -18.05 4.28 -457.80 -1.96 -20.01 16 13 C 0.70 24.29 6.92 179.05 1.24 25.53 16 14 O -0.63 -27.16 13.46 -3.99 -0.05 -27.22 16 15 N -0.73 -25.89 4.96 -478.54 -2.37 -28.26 16 16 C 0.17 7.55 4.50 86.38 0.39 7.93 16 17 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 18 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 19 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 20 C -0.53 -28.53 8.01 25.60 0.21 -28.32 16 21 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 22 C 0.03 1.53 5.15 84.66 0.44 1.97 16 23 N -0.90 -48.28 9.35 21.45 0.20 -48.08 16 24 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H 0.03 1.03 5.77 -2.39 -0.01 1.02 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.23 7.53 -2.39 -0.02 1.22 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 0.88 7.45 -2.39 -0.02 0.86 16 40 H 0.41 7.72 8.40 -92.71 -0.78 6.94 16 41 H 0.40 12.36 6.18 -92.71 -0.57 11.79 16 42 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 47 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 48 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 50 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -62.44 370.54 2.53 -59.91 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.44 Total: 26.75 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.13 Total: -8.21 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -4.13 Total: -96.35 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -62.44 2.53 -59.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458480047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.476 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds