Wall clock time and date at job start Tue Mar 31 2020 08:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.78563 * 2 1 4 4 C 1.53240 * 109.62741 * 239.51608 * 2 1 3 5 5 N 1.46899 * 109.34039 * 294.11940 * 4 2 1 6 6 C 1.46905 * 111.00175 * 172.74576 * 5 4 2 7 7 C 1.46892 * 111.27041 * 296.89483 * 5 4 2 8 8 H 1.09002 * 109.49602 * 303.11779 * 7 5 4 9 9 C 1.53003 * 109.49619 * 183.06338 * 7 5 4 10 10 C 1.52784 * 109.42303 * 62.96114 * 7 5 4 11 11 H 1.09002 * 109.45667 * 66.18675 * 10 7 5 12 12 C 1.52999 * 109.55779 * 186.61105 * 10 7 5 13 13 N 1.47074 * 109.63272 * 120.48993 * 2 1 3 14 14 C 1.34779 * 120.88202 * 248.53065 * 13 2 1 15 15 O 1.21274 * 120.00272 * 174.30624 * 14 13 2 16 16 C 1.50701 * 119.99922 * 354.57748 * 14 13 2 17 17 C 1.52998 * 109.47455 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47135 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.46768 * 180.02562 * 18 17 16 20 20 C 1.50709 * 109.46897 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99796 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99967 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00034 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99920 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47130 * 90.00134 * 24 22 20 26 26 H 1.48506 * 109.46853 * 209.99703 * 24 22 20 27 27 H 1.48495 * 109.46996 * 329.99681 * 24 22 20 28 28 H 1.08997 * 109.46932 * 299.51210 * 1 2 3 29 29 H 1.08997 * 109.46996 * 59.51819 * 1 2 3 30 30 H 1.09000 * 109.46762 * 179.51379 * 1 2 3 31 31 H 1.09002 * 109.49505 * 54.08274 * 4 2 1 32 32 H 1.09001 * 109.49329 * 174.15798 * 4 2 1 33 33 H 1.09000 * 109.47143 * 63.95378 * 6 5 4 34 34 H 1.08996 * 109.47393 * 183.95752 * 6 5 4 35 35 H 1.09004 * 109.47099 * 303.95957 * 6 5 4 36 36 H 1.09006 * 109.46668 * 60.00184 * 9 7 5 37 37 H 1.08995 * 109.47182 * 179.97438 * 9 7 5 38 38 H 1.08996 * 109.46849 * 300.00139 * 9 7 5 39 39 H 1.09006 * 109.47365 * 187.46759 * 12 10 7 40 40 H 1.09004 * 109.47483 * 307.46329 * 12 10 7 41 41 H 1.09000 * 109.47336 * 67.46545 * 12 10 7 42 42 H 1.09003 * 109.46859 * 300.00616 * 16 14 13 43 43 H 1.09004 * 109.46972 * 60.00128 * 16 14 13 44 44 H 1.08992 * 109.47189 * 300.00479 * 17 16 14 45 45 H 1.09002 * 109.46496 * 59.99975 * 17 16 14 46 46 H 1.09000 * 109.47423 * 300.00060 * 18 17 16 47 47 H 1.09004 * 109.47059 * 60.00172 * 18 17 16 48 48 H 1.08995 * 109.47858 * 300.00349 * 19 18 17 49 49 H 1.08998 * 109.47200 * 60.00712 * 19 18 17 50 50 H 0.96997 * 119.99955 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0447 -0.7322 -1.2438 5 7 1.6746 -2.1514 -1.1609 6 6 1.9978 -2.8536 -2.4102 7 6 2.3147 -2.8027 -0.0103 8 1 3.3960 -2.6838 -0.0801 9 6 1.9640 -4.2920 -0.0063 10 6 1.8165 -2.1562 1.2813 11 1 0.7546 -2.3675 1.4069 12 6 2.6001 -2.7167 2.4699 13 7 2.0242 -0.7029 1.1937 14 6 2.6553 -0.0337 2.1788 15 8 2.9644 -0.6085 3.2009 16 6 2.9715 1.4304 2.0125 17 6 3.6844 1.9437 3.2652 18 6 4.0060 3.4299 3.0961 19 6 4.7194 3.9430 4.3486 20 6 5.0356 5.4071 4.1823 21 1 4.7553 5.9203 3.2743 22 6 5.6827 6.0913 5.1893 23 7 5.9591 7.3688 5.0440 24 14 6.1681 5.2033 6.7595 25 1 7.5324 4.6371 6.6064 26 1 6.1542 6.1611 7.8943 27 1 5.2037 4.1061 7.0259 28 1 -0.3633 0.5062 0.8943 29 1 -0.3633 0.5213 -0.8856 30 1 -0.3633 -1.0276 -0.0087 31 1 1.5992 -0.2916 -2.1358 32 1 3.1297 -0.6417 -1.2963 33 1 3.0767 -2.8427 -2.5645 34 1 1.6500 -3.8847 -2.3478 35 1 1.5063 -2.3543 -3.2452 36 1 2.3204 -4.7515 -0.9283 37 1 2.4395 -4.7749 0.8473 38 1 0.8829 -4.4104 0.0645 39 1 2.1578 -2.3569 3.3989 40 1 2.5637 -3.8059 2.4481 41 1 3.6372 -2.3866 2.4096 42 1 3.6180 1.5663 1.1455 43 1 2.0462 1.9876 1.8666 44 1 3.0383 1.8077 4.1324 45 1 4.6098 1.3863 3.4106 46 1 4.6523 3.5655 2.2290 47 1 3.0808 3.9875 2.9504 48 1 4.0735 3.8074 5.2160 49 1 5.6446 3.3854 4.4938 50 1 6.4140 7.8503 5.7526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593190307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:16 Heat of formation + Delta-G solvation = -34.858064 kcal Electronic energy + Delta-G solvation = -25162.567778 eV Core-core repulsion = 21803.684485 eV Total energy + Delta-G solvation = -3358.883293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.96764 -38.61190 -35.43268 -35.23533 -34.20285 -32.53302 -30.64530 -30.04340 -28.83852 -27.48646 -26.08598 -25.46306 -23.34284 -22.13060 -21.78956 -20.41506 -19.99759 -18.49645 -17.03341 -16.65532 -16.42001 -16.03614 -15.69756 -15.35432 -14.81957 -14.61761 -14.24524 -14.00459 -13.61173 -13.42082 -13.33316 -12.90368 -12.84560 -12.64362 -12.39211 -12.32342 -12.14877 -11.93751 -11.85689 -11.81320 -11.73963 -11.69851 -11.24066 -11.18159 -11.08475 -11.02255 -10.66654 -10.51362 -9.84483 -9.63900 -9.54385 -9.11671 -9.05158 -8.90856 -8.54542 -8.48229 -5.99459 -3.96800 2.67434 2.78049 3.36194 3.43145 3.46202 3.49454 4.30261 4.42941 4.49875 4.51191 4.69267 4.74865 4.86177 4.94066 5.03825 5.09589 5.14734 5.20699 5.23713 5.27750 5.31185 5.35634 5.36163 5.38147 5.44703 5.50317 5.59749 5.64521 5.68853 5.81348 5.85287 5.98324 6.05042 6.09681 6.16647 6.24037 6.43879 6.51636 6.60334 6.66967 6.70538 6.84132 7.00976 7.36757 7.40137 7.52724 7.86130 8.24200 8.59650 9.05613 9.64061 11.14093 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.002849 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.350913 B = 9823.994617 C =10373.483918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 H 0.100 0.900 4 C 0.045 3.955 5 N -0.536 5.536 6 C 0.022 3.978 7 C 0.070 3.930 8 H 0.044 0.956 9 C -0.148 4.148 10 C 0.154 3.846 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.615 5.615 14 C 0.516 3.484 15 O -0.529 6.529 16 C -0.140 4.140 17 C -0.105 4.105 18 C -0.102 4.102 19 C -0.015 4.015 20 C -0.519 4.519 21 H 0.071 0.929 22 C 0.064 3.936 23 N -0.906 5.906 24 Si 0.879 3.121 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.015 0.985 49 H 0.011 0.989 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.564 -23.572 -15.976 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.032 3.968 3 H 0.118 0.882 4 C -0.084 4.084 5 N -0.260 5.260 6 C -0.126 4.126 7 C -0.039 4.039 8 H 0.062 0.938 9 C -0.206 4.206 10 C 0.051 3.949 11 H 0.093 0.907 12 C -0.198 4.198 13 N -0.350 5.350 14 C 0.306 3.694 15 O -0.405 6.405 16 C -0.180 4.180 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.052 4.052 20 C -0.557 4.557 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.546 5.546 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.189 1.189 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.034 0.966 49 H 0.029 0.971 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.811 -23.744 -15.252 30.593 hybrid contribution 1.205 -0.191 0.464 1.305 sum -10.606 -23.935 -14.788 30.068 Atomic orbital electron populations 1.22019 0.94050 1.03266 1.01920 1.21429 0.95374 0.96247 0.83713 0.88246 1.22524 0.98749 0.88685 0.98467 1.61945 1.58958 1.02014 1.03109 1.22435 0.98860 0.99871 0.91471 1.22003 0.96575 0.94636 0.90683 0.93758 1.21950 1.02672 0.93723 1.02248 1.21186 1.00070 0.79295 0.94338 0.90701 1.22235 1.01245 0.98470 0.97870 1.48413 1.58478 1.07730 1.20365 1.21002 0.76291 0.89716 0.82416 1.90720 1.52756 1.69039 1.28006 1.21837 1.02591 0.91535 1.02022 1.21473 1.00130 0.97349 0.95315 1.21472 1.00135 0.92267 1.00099 1.19573 0.95228 0.96734 0.93712 1.21188 1.37471 0.93054 1.03971 0.91120 1.25042 0.95384 0.94728 0.98463 1.69920 1.42290 1.08490 1.33878 0.86775 0.79410 0.79861 0.83266 1.20337 1.21462 1.18881 0.92543 0.91600 0.91149 0.89340 0.94237 0.95706 0.90765 0.91297 0.92130 0.91465 0.91521 0.89890 0.93505 0.91855 0.89337 0.89159 0.91789 0.91913 0.92968 0.92866 0.96625 0.97105 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.21 37.16 0.34 -0.86 16 2 C 0.14 1.17 3.14 -67.49 -0.21 0.96 16 3 H 0.10 0.79 6.01 -51.93 -0.31 0.48 16 4 C 0.04 0.34 5.01 -3.70 -0.02 0.32 16 5 N -0.54 -4.17 4.22 -234.86 -0.99 -5.16 16 6 C 0.02 0.13 9.02 60.07 0.54 0.67 16 7 C 0.07 0.60 2.04 -67.83 -0.14 0.47 16 8 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 9 C -0.15 -1.00 8.51 37.16 0.32 -0.68 16 10 C 0.15 1.59 2.69 -67.73 -0.18 1.40 16 11 H 0.08 0.77 7.65 -51.93 -0.40 0.37 16 12 C -0.14 -1.62 7.55 37.16 0.28 -1.33 16 13 N -0.61 -6.79 2.71 -157.72 -0.43 -7.22 16 14 C 0.52 7.14 7.47 -10.98 -0.08 7.06 16 15 O -0.53 -8.92 11.71 5.56 0.07 -8.86 16 16 C -0.14 -1.84 4.06 -27.88 -0.11 -1.96 16 17 C -0.10 -1.79 4.50 -26.73 -0.12 -1.91 16 18 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 19 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 20 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 21 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 22 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 23 N -0.91 -28.55 13.96 55.43 0.77 -27.78 16 24 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.60 7.09 -51.93 -0.37 0.23 16 31 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.07 0.40 6.18 -51.93 -0.32 0.08 16 35 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.06 0.35 6.31 -51.93 -0.33 0.03 16 37 H 0.07 0.44 6.48 -51.93 -0.34 0.10 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 1.13 6.59 -51.93 -0.34 0.79 16 40 H 0.05 0.43 6.33 -51.93 -0.33 0.10 16 41 H 0.06 0.85 6.99 -51.93 -0.36 0.49 16 42 H 0.09 1.04 7.88 -51.93 -0.41 0.63 16 43 H 0.09 1.05 7.79 -51.93 -0.40 0.65 16 44 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 45 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 49 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 50 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -32.94 372.20 -9.03 -41.97 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -9.32 Total: -4.19 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.07 Total: -12.21 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.64 Total: -40.16 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.07 Total: -8.86 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.94 -9.03 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593190307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.114 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds