Wall clock time and date at job start Tue Mar 31 2020 08:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.78563 * 2 1 4 4 C 1.53240 * 109.62741 * 239.51608 * 2 1 3 5 5 N 1.46899 * 109.34039 * 294.11940 * 4 2 1 6 6 C 1.46905 * 111.00175 * 172.74576 * 5 4 2 7 7 C 1.46892 * 111.27041 * 296.89483 * 5 4 2 8 8 H 1.09002 * 109.49602 * 303.11779 * 7 5 4 9 9 C 1.53003 * 109.49619 * 183.06338 * 7 5 4 10 10 C 1.52784 * 109.42303 * 62.96114 * 7 5 4 11 11 H 1.09002 * 109.45667 * 66.18675 * 10 7 5 12 12 C 1.52999 * 109.55779 * 186.61105 * 10 7 5 13 13 N 1.47074 * 109.63272 * 120.48993 * 2 1 3 14 14 C 1.34779 * 120.88202 * 248.53065 * 13 2 1 15 15 O 1.21274 * 120.00272 * 174.30624 * 14 13 2 16 16 C 1.50701 * 119.99922 * 354.57748 * 14 13 2 17 17 C 1.52998 * 109.47455 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47135 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.46768 * 180.02562 * 18 17 16 20 20 C 1.50709 * 109.46897 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99796 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99967 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00034 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99920 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47130 * 90.00134 * 24 22 20 26 26 H 1.48506 * 109.46853 * 209.99703 * 24 22 20 27 27 H 1.48495 * 109.46996 * 329.99681 * 24 22 20 28 28 H 1.08997 * 109.46932 * 299.51210 * 1 2 3 29 29 H 1.08997 * 109.46996 * 59.51819 * 1 2 3 30 30 H 1.09000 * 109.46762 * 179.51379 * 1 2 3 31 31 H 1.09002 * 109.49505 * 54.08274 * 4 2 1 32 32 H 1.09001 * 109.49329 * 174.15798 * 4 2 1 33 33 H 1.09000 * 109.47143 * 63.95378 * 6 5 4 34 34 H 1.08996 * 109.47393 * 183.95752 * 6 5 4 35 35 H 1.09004 * 109.47099 * 303.95957 * 6 5 4 36 36 H 1.09006 * 109.46668 * 60.00184 * 9 7 5 37 37 H 1.08995 * 109.47182 * 179.97438 * 9 7 5 38 38 H 1.08996 * 109.46849 * 300.00139 * 9 7 5 39 39 H 1.09006 * 109.47365 * 187.46759 * 12 10 7 40 40 H 1.09004 * 109.47483 * 307.46329 * 12 10 7 41 41 H 1.09000 * 109.47336 * 67.46545 * 12 10 7 42 42 H 1.09003 * 109.46859 * 300.00616 * 16 14 13 43 43 H 1.09004 * 109.46972 * 60.00128 * 16 14 13 44 44 H 1.08992 * 109.47189 * 300.00479 * 17 16 14 45 45 H 1.09002 * 109.46496 * 59.99975 * 17 16 14 46 46 H 1.09000 * 109.47423 * 300.00060 * 18 17 16 47 47 H 1.09004 * 109.47059 * 60.00172 * 18 17 16 48 48 H 1.08995 * 109.47858 * 300.00349 * 19 18 17 49 49 H 1.08998 * 109.47200 * 60.00712 * 19 18 17 50 50 H 0.96997 * 119.99955 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0447 -0.7322 -1.2438 5 7 1.6746 -2.1514 -1.1609 6 6 1.9978 -2.8536 -2.4102 7 6 2.3147 -2.8027 -0.0103 8 1 3.3960 -2.6838 -0.0801 9 6 1.9640 -4.2920 -0.0063 10 6 1.8165 -2.1562 1.2813 11 1 0.7546 -2.3675 1.4069 12 6 2.6001 -2.7167 2.4699 13 7 2.0242 -0.7029 1.1937 14 6 2.6553 -0.0337 2.1788 15 8 2.9644 -0.6085 3.2009 16 6 2.9715 1.4304 2.0125 17 6 3.6844 1.9437 3.2652 18 6 4.0060 3.4299 3.0961 19 6 4.7194 3.9430 4.3486 20 6 5.0356 5.4071 4.1823 21 1 4.7553 5.9203 3.2743 22 6 5.6827 6.0913 5.1893 23 7 5.9591 7.3688 5.0440 24 14 6.1681 5.2033 6.7595 25 1 7.5324 4.6371 6.6064 26 1 6.1542 6.1611 7.8943 27 1 5.2037 4.1061 7.0259 28 1 -0.3633 0.5062 0.8943 29 1 -0.3633 0.5213 -0.8856 30 1 -0.3633 -1.0276 -0.0087 31 1 1.5992 -0.2916 -2.1358 32 1 3.1297 -0.6417 -1.2963 33 1 3.0767 -2.8427 -2.5645 34 1 1.6500 -3.8847 -2.3478 35 1 1.5063 -2.3543 -3.2452 36 1 2.3204 -4.7515 -0.9283 37 1 2.4395 -4.7749 0.8473 38 1 0.8829 -4.4104 0.0645 39 1 2.1578 -2.3569 3.3989 40 1 2.5637 -3.8059 2.4481 41 1 3.6372 -2.3866 2.4096 42 1 3.6180 1.5663 1.1455 43 1 2.0462 1.9876 1.8666 44 1 3.0383 1.8077 4.1324 45 1 4.6098 1.3863 3.4106 46 1 4.6523 3.5655 2.2290 47 1 3.0808 3.9875 2.9504 48 1 4.0735 3.8074 5.2160 49 1 5.6446 3.3854 4.4938 50 1 6.4140 7.8503 5.7526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593190307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:15 Heat of formation + Delta-G solvation = -55.307581 kcal Electronic energy + Delta-G solvation = -25163.454535 eV Core-core repulsion = 21803.684485 eV Total energy + Delta-G solvation = -3359.770051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83589 -39.49546 -36.77797 -36.20308 -35.17587 -34.48009 -32.07308 -30.94758 -29.81102 -28.07336 -27.57207 -26.29336 -24.43275 -23.28526 -22.73464 -21.75458 -21.23318 -19.41365 -18.86293 -17.85797 -17.36924 -16.96136 -16.55245 -16.31768 -16.13953 -15.76403 -15.44310 -15.10143 -14.70117 -14.70021 -14.15552 -13.99439 -13.83687 -13.72717 -13.53935 -13.46977 -13.42786 -13.01479 -12.87927 -12.67377 -12.60439 -12.52040 -12.43881 -12.28979 -12.09458 -11.93146 -11.86719 -11.76987 -11.64782 -11.44018 -11.35267 -11.25209 -10.76697 -10.11800 -9.72242 -9.25582 -8.30312 -6.33332 1.34043 1.35568 1.48544 1.63150 1.91322 2.35311 2.86138 3.05100 3.48045 3.73764 3.76321 3.96963 4.01136 4.08993 4.11396 4.16075 4.22280 4.40933 4.45318 4.50715 4.55413 4.60546 4.62122 4.68304 4.71820 4.74332 4.76112 4.83054 4.88261 4.90732 5.00330 5.05409 5.07483 5.11390 5.13901 5.19028 5.24545 5.27877 5.38849 5.43387 5.58324 5.64352 5.65195 5.68033 6.02976 6.03278 6.28942 6.45091 6.74520 7.22047 7.31535 8.86330 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.002849 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.350913 B = 9823.994617 C =10373.483918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.129 3.871 3 H 0.109 0.891 4 C 0.046 3.954 5 N -0.538 5.538 6 C 0.022 3.978 7 C 0.076 3.924 8 H 0.027 0.973 9 C -0.144 4.144 10 C 0.152 3.848 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.610 5.610 14 C 0.511 3.489 15 O -0.568 6.568 16 C -0.132 4.132 17 C -0.094 4.094 18 C -0.093 4.093 19 C -0.016 4.016 20 C -0.530 4.530 21 H 0.037 0.963 22 C 0.004 3.996 23 N -0.950 5.950 24 Si 0.947 3.053 25 H -0.267 1.267 26 H -0.281 1.281 27 H -0.253 1.253 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.030 0.970 33 H 0.020 0.980 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.014 0.986 49 H 0.012 0.988 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 -25.371 -17.162 33.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.026 3.974 3 H 0.127 0.873 4 C -0.083 4.083 5 N -0.263 5.263 6 C -0.126 4.126 7 C -0.033 4.033 8 H 0.045 0.955 9 C -0.201 4.201 10 C 0.049 3.951 11 H 0.096 0.904 12 C -0.188 4.188 13 N -0.343 5.343 14 C 0.301 3.699 15 O -0.448 6.448 16 C -0.172 4.172 17 C -0.132 4.132 18 C -0.130 4.130 19 C -0.053 4.053 20 C -0.568 4.568 21 H 0.056 0.944 22 C -0.192 4.192 23 N -0.591 5.591 24 Si 0.771 3.229 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.176 1.176 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.032 0.968 49 H 0.030 0.970 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.775 -25.558 -16.489 32.989 hybrid contribution 1.463 0.409 0.738 1.689 sum -11.312 -25.149 -15.751 31.757 Atomic orbital electron populations 1.21956 0.93161 1.02966 1.02420 1.21704 0.96019 0.96662 0.83001 0.87315 1.22551 0.98299 0.88741 0.98685 1.61980 1.58670 1.02168 1.03467 1.22493 0.98796 1.00368 0.90915 1.21896 0.95451 0.95756 0.90216 0.95509 1.21924 1.02955 0.92285 1.02966 1.21251 1.00002 0.78957 0.94847 0.90362 1.22060 0.99621 0.99755 0.97378 1.48477 1.57281 1.08207 1.20382 1.21083 0.76388 0.89934 0.82460 1.90721 1.54600 1.69786 1.29658 1.21730 1.03472 0.91392 1.00570 1.21253 0.99843 0.95117 0.96969 1.21330 0.99785 0.94069 0.97849 1.19565 0.95750 0.93983 0.96038 1.21540 1.37156 0.95314 1.02808 0.94445 1.25985 0.95451 0.95485 1.02327 1.70057 1.43479 1.10242 1.35364 0.85701 0.79587 0.78924 0.78718 1.19234 1.20676 1.17632 0.93453 0.89640 0.91838 0.87187 0.95193 0.96098 0.89917 0.90061 0.90927 0.91380 0.91106 0.92372 0.91367 0.94231 0.87402 0.87119 0.92964 0.93072 0.92577 0.92468 0.96810 0.96976 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.21 71.98 0.66 -1.28 16 2 C 0.13 1.93 3.14 44.96 0.14 2.07 16 3 H 0.11 1.42 6.01 -2.39 -0.01 1.41 16 4 C 0.05 0.59 5.01 86.38 0.43 1.02 16 5 N -0.54 -7.13 4.22 -896.98 -3.78 -10.91 16 6 C 0.02 0.21 9.02 127.69 1.15 1.36 16 7 C 0.08 1.20 2.04 44.85 0.09 1.29 16 8 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 9 C -0.14 -1.64 8.51 71.98 0.61 -1.03 16 10 C 0.15 3.00 2.69 44.81 0.12 3.12 16 11 H 0.08 1.51 7.65 -2.39 -0.02 1.50 16 12 C -0.13 -3.02 7.55 71.98 0.54 -2.48 16 13 N -0.61 -12.82 2.71 -771.29 -2.09 -14.91 16 14 C 0.51 13.86 7.47 87.66 0.65 14.52 16 15 O -0.57 -19.50 11.71 -3.01 -0.04 -19.53 16 16 C -0.13 -3.28 4.06 29.85 0.12 -3.16 16 17 C -0.09 -3.13 4.50 30.59 0.14 -2.99 16 18 C -0.09 -3.62 5.15 30.59 0.16 -3.47 16 19 C -0.02 -0.78 4.04 29.85 0.12 -0.66 16 20 C -0.53 -31.50 9.66 25.60 0.25 -31.25 16 21 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 22 C 0.00 0.25 5.47 84.65 0.46 0.71 16 23 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 24 Si 0.95 46.32 27.47 68.60 1.88 48.21 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.94 7.09 -2.39 -0.02 0.93 16 31 H 0.11 0.96 8.07 -2.39 -0.02 0.94 16 32 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.08 0.66 6.18 -2.39 -0.01 0.65 16 35 H 0.08 0.60 8.08 -2.38 -0.02 0.58 16 36 H 0.07 0.67 6.31 -2.38 -0.02 0.65 16 37 H 0.07 0.77 6.48 -2.39 -0.02 0.75 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.06 1.63 6.59 -2.38 -0.02 1.62 16 40 H 0.07 1.22 6.33 -2.39 -0.02 1.21 16 41 H 0.04 1.09 6.99 -2.39 -0.02 1.08 16 42 H 0.11 2.28 7.88 -2.39 -0.02 2.26 16 43 H 0.11 2.31 7.79 -2.39 -0.02 2.29 16 44 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 45 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 46 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 49 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 50 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -72.46 372.20 2.76 -69.70 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.82 Total: 10.23 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 5.66 Total: -22.22 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -5.57 Total: -86.38 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.04 Total: -19.53 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.21 kcal Total: -72.46 2.76 -69.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593190307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.390 kcal (2) G-P(sol) polarization free energy of solvation -72.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds