Wall clock time and date at job start Tue Mar 31 2020 08:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48499 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46940 * 299.99747 * 3 2 1 6 6 H 1.48495 * 109.47345 * 60.00053 * 3 2 1 7 7 C 1.39934 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00322 * 197.87934 * 7 2 1 9 9 C 1.41399 * 120.00288 * 17.88319 * 7 2 1 10 10 C 1.40720 * 120.24771 * 204.39463 * 9 7 2 11 11 C 1.37614 * 119.74449 * 179.97438 * 10 9 7 12 12 C 1.38630 * 120.25280 * 0.25200 * 11 10 9 13 13 S 1.76199 * 119.75275 * 179.74404 * 12 11 10 14 14 O 1.42101 * 106.40287 * 203.54099 * 13 12 11 15 15 O 1.42107 * 106.40088 * 336.45789 * 13 12 11 16 16 N 1.65596 * 107.21753 * 89.99730 * 13 12 11 17 17 C 1.47023 * 125.64297 * 90.02734 * 16 13 12 18 18 C 1.54330 * 107.26780 * 181.02347 * 17 16 13 19 19 C 1.55155 * 102.94249 * 22.18915 * 18 17 16 20 20 H 1.09000 * 111.00323 * 206.41891 * 19 18 17 21 21 O 1.42904 * 110.99980 * 82.57420 * 19 18 17 22 22 C 1.47425 * 125.65156 * 269.71933 * 16 13 12 23 23 C 1.38642 * 120.49998 * 359.48980 * 12 11 10 24 24 C 1.37623 * 120.24312 * 0.50882 * 23 12 11 25 25 H 0.97006 * 119.99959 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.12512 * 359.94710 * 10 9 7 27 27 H 1.08004 * 119.86999 * 179.97438 * 11 10 9 28 28 H 1.08994 * 109.88588 * 300.43729 * 17 16 13 29 29 H 1.09000 * 109.88531 * 61.45407 * 17 16 13 30 30 H 1.08998 * 110.71938 * 140.55590 * 18 17 16 31 31 H 1.09004 * 110.71595 * 263.83084 * 18 17 16 32 32 H 0.96700 * 114.00006 * 61.45353 * 21 19 18 33 33 H 1.09002 * 110.36303 * 274.74937 * 22 16 13 34 34 H 1.09004 * 110.36501 * 37.06687 * 22 16 13 35 35 H 1.07992 * 119.87556 * 180.25772 * 23 12 11 36 36 H 1.07997 * 120.12583 * 179.77403 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8836 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2344 0.2877 9 6 1.3522 -2.4070 -0.3749 10 6 1.8256 -3.6499 0.0849 11 6 1.1792 -4.8066 -0.2865 12 6 0.0688 -4.7510 -1.1147 13 16 -0.7447 -6.2407 -1.5875 14 8 -1.4297 -5.9566 -2.7997 15 8 0.2167 -7.2798 -1.4632 16 7 -1.9108 -6.5442 -0.4515 17 6 -3.3012 -6.0692 -0.5029 18 6 -4.0050 -6.5731 0.7748 19 6 -2.8221 -6.8246 1.7469 20 1 -3.0777 -7.5853 2.4846 21 8 -2.4163 -5.6117 2.3843 22 6 -1.7284 -7.3408 0.7755 23 6 -0.4096 -3.5318 -1.5695 24 6 0.2211 -2.3624 -1.2108 25 1 -0.4850 0.8401 -0.0004 26 1 2.6931 -3.6958 0.7265 27 1 1.5410 -5.7616 0.0649 28 1 -3.3200 -4.9798 -0.5313 29 1 -3.7981 -6.4715 -1.3857 30 1 -4.6752 -5.8108 1.1720 31 1 -4.5456 -7.4988 0.5777 32 1 -3.1054 -5.2018 2.9249 33 1 -1.8739 -8.4003 0.5650 34 1 -0.7371 -7.1692 1.1953 35 1 -1.2778 -3.5000 -2.2108 36 1 -0.1510 -1.4139 -1.5691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:28 Heat of formation + Delta-G solvation = -106.482330 kcal Electronic energy + Delta-G solvation = -22218.519192 eV Core-core repulsion = 18794.064963 eV Total energy + Delta-G solvation = -3424.454229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.81101 -37.50682 -36.47711 -35.19141 -35.09605 -33.98703 -30.20595 -30.04147 -29.40829 -28.55955 -25.76063 -22.37229 -21.43872 -21.18958 -21.02203 -18.51498 -17.58173 -17.45569 -17.22489 -16.51988 -15.52356 -15.22435 -14.98562 -14.31478 -14.10853 -13.68885 -13.46577 -13.17249 -13.11348 -12.62450 -12.37254 -12.14790 -12.10484 -11.73481 -11.51183 -11.40431 -11.34357 -11.26375 -11.20403 -11.14599 -10.86675 -10.78169 -10.35858 -9.96835 -9.70896 -9.56724 -9.46217 -8.59338 -7.88913 -7.63443 -7.09706 -4.74493 1.21719 2.31196 2.90351 2.93124 2.98063 2.99206 3.67954 3.69980 4.11467 4.29509 4.45408 4.54895 4.73970 4.92941 5.18835 5.33235 5.44647 5.56468 5.64078 5.69339 5.81792 5.90045 6.07505 6.11994 6.16144 6.38431 6.63054 6.73054 6.80500 7.02748 7.11400 7.39860 7.48816 7.69149 7.70714 7.82622 8.02345 8.37300 8.56776 8.71058 9.81761 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.004829 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.342820 B = 5796.701266 C = 6315.644225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.140 3.860 10 C -0.237 4.237 11 C 0.004 3.996 12 C -0.782 4.782 13 S 2.706 3.294 14 O -0.980 6.980 15 O -0.982 6.982 16 N -1.013 6.013 17 C 0.127 3.873 18 C -0.160 4.160 19 C 0.090 3.910 20 H 0.073 0.927 21 O -0.547 6.547 22 C 0.131 3.869 23 C -0.014 4.014 24 C -0.183 4.183 25 H 0.287 0.713 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.376 0.624 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 -6.934 4.468 11.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.740 3.260 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.258 4.258 11 C -0.016 4.016 12 C -0.878 4.878 13 S 2.808 3.192 14 O -0.971 6.971 15 O -0.973 6.973 16 N -0.848 5.848 17 C 0.001 3.999 18 C -0.200 4.200 19 C 0.030 3.970 20 H 0.091 0.909 21 O -0.352 6.352 22 C 0.005 3.995 23 C -0.035 4.035 24 C -0.203 4.203 25 H 0.099 0.901 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.223 0.777 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.333 -7.481 3.353 10.999 hybrid contribution -0.187 1.574 0.827 1.788 sum -7.520 -5.907 4.181 10.436 Atomic orbital electron populations 1.69842 1.07910 1.30124 1.31024 1.26128 0.94878 1.02087 0.91846 0.86117 0.81059 0.79935 0.78939 1.17994 1.19270 1.19569 1.19954 0.98492 0.91170 1.36749 0.89449 1.17851 0.90010 0.92140 0.86349 1.21029 1.04389 0.92711 1.07663 1.20131 0.92179 0.97213 0.92070 1.29204 1.16114 1.15906 1.26566 1.00904 0.71781 0.74412 0.72152 1.93472 1.74781 1.86510 1.42359 1.93473 1.60328 1.56809 1.86650 1.58849 1.22649 1.65633 1.37698 1.21536 0.81148 0.99564 0.97629 1.23349 0.97959 1.02206 0.96441 1.22982 0.93719 0.87253 0.93076 0.90928 1.86665 1.42207 1.39157 1.67169 1.21948 0.99904 0.94324 0.83306 1.20226 0.96570 0.91728 0.94953 1.21315 1.00060 0.96775 1.02141 0.90142 0.88238 0.87983 0.91411 0.91550 0.89945 0.90041 0.77680 0.90310 0.89830 0.88095 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.55 10.95 55.55 0.61 -17.94 16 2 C 0.07 1.70 5.14 -17.34 -0.09 1.61 16 3 Si 0.92 17.32 29.60 -169.99 -5.03 12.29 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.44 -10.98 9.05 -37.74 -0.34 -11.32 16 8 H 0.09 2.09 7.91 -52.49 -0.42 1.67 16 9 C 0.14 3.68 5.58 -106.82 -0.60 3.08 16 10 C -0.24 -5.86 9.80 -38.87 -0.38 -6.24 16 11 C 0.00 0.10 9.49 -39.66 -0.38 -0.28 16 12 C -0.78 -18.23 6.00 -39.29 -0.24 -18.47 16 13 S 2.71 55.76 5.93 -107.50 -0.64 55.12 16 14 O -0.98 -21.90 16.85 -57.17 -0.96 -22.86 16 15 O -0.98 -21.63 16.84 -57.17 -0.96 -22.59 16 16 N -1.01 -16.94 3.70 -111.29 -0.41 -17.35 16 17 C 0.13 1.79 6.99 -3.06 -0.02 1.76 16 18 C -0.16 -1.61 6.68 -24.89 -0.17 -1.78 16 19 C 0.09 1.02 4.43 -24.47 -0.11 0.91 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 21 O -0.55 -7.40 13.48 -35.23 -0.48 -7.88 16 22 C 0.13 1.83 6.73 -2.41 -0.02 1.82 16 23 C -0.01 -0.35 9.49 -39.66 -0.38 -0.73 16 24 C -0.18 -4.73 8.70 -38.87 -0.34 -5.07 16 25 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 26 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 27 H 0.10 2.18 7.60 -52.48 -0.40 1.79 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.38 3.32 9.11 45.56 0.42 3.73 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.10 2.28 7.60 -52.49 -0.40 1.88 16 36 H 0.12 3.17 6.15 -52.49 -0.32 2.84 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -32.30 318.47 -9.76 -42.05 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.64 Total: 9.05 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: -3.05 Total: -34.70 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.20 Total: -35.29 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -2.40 Total: -53.32 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 55.76 SS G_CDS: -0.64 Total: 55.12 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.30 -9.76 -42.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.429 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds