Wall clock time and date at job start Tue Mar 31 2020 08:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48499 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46940 * 299.99747 * 3 2 1 6 6 H 1.48495 * 109.47345 * 60.00053 * 3 2 1 7 7 C 1.39934 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00322 * 197.87934 * 7 2 1 9 9 C 1.41399 * 120.00288 * 17.88319 * 7 2 1 10 10 C 1.40720 * 120.24771 * 204.39463 * 9 7 2 11 11 C 1.37614 * 119.74449 * 179.97438 * 10 9 7 12 12 C 1.38630 * 120.25280 * 0.25200 * 11 10 9 13 13 S 1.76199 * 119.75275 * 179.74404 * 12 11 10 14 14 O 1.42101 * 106.40287 * 203.54099 * 13 12 11 15 15 O 1.42107 * 106.40088 * 336.45789 * 13 12 11 16 16 N 1.65596 * 107.21753 * 89.99730 * 13 12 11 17 17 C 1.47023 * 125.64297 * 90.02734 * 16 13 12 18 18 C 1.54330 * 107.26780 * 181.02347 * 17 16 13 19 19 C 1.55155 * 102.94249 * 22.18915 * 18 17 16 20 20 H 1.09000 * 111.00323 * 206.41891 * 19 18 17 21 21 O 1.42904 * 110.99980 * 82.57420 * 19 18 17 22 22 C 1.47425 * 125.65156 * 269.71933 * 16 13 12 23 23 C 1.38642 * 120.49998 * 359.48980 * 12 11 10 24 24 C 1.37623 * 120.24312 * 0.50882 * 23 12 11 25 25 H 0.97006 * 119.99959 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.12512 * 359.94710 * 10 9 7 27 27 H 1.08004 * 119.86999 * 179.97438 * 11 10 9 28 28 H 1.08994 * 109.88588 * 300.43729 * 17 16 13 29 29 H 1.09000 * 109.88531 * 61.45407 * 17 16 13 30 30 H 1.08998 * 110.71938 * 140.55590 * 18 17 16 31 31 H 1.09004 * 110.71595 * 263.83084 * 18 17 16 32 32 H 0.96700 * 114.00006 * 61.45353 * 21 19 18 33 33 H 1.09002 * 110.36303 * 274.74937 * 22 16 13 34 34 H 1.09004 * 110.36501 * 37.06687 * 22 16 13 35 35 H 1.07992 * 119.87556 * 180.25772 * 23 12 11 36 36 H 1.07997 * 120.12583 * 179.77403 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8836 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2344 0.2877 9 6 1.3522 -2.4070 -0.3749 10 6 1.8256 -3.6499 0.0849 11 6 1.1792 -4.8066 -0.2865 12 6 0.0688 -4.7510 -1.1147 13 16 -0.7447 -6.2407 -1.5875 14 8 -1.4297 -5.9566 -2.7997 15 8 0.2167 -7.2798 -1.4632 16 7 -1.9108 -6.5442 -0.4515 17 6 -3.3012 -6.0692 -0.5029 18 6 -4.0050 -6.5731 0.7748 19 6 -2.8221 -6.8246 1.7469 20 1 -3.0777 -7.5853 2.4846 21 8 -2.4163 -5.6117 2.3843 22 6 -1.7284 -7.3408 0.7755 23 6 -0.4096 -3.5318 -1.5695 24 6 0.2211 -2.3624 -1.2108 25 1 -0.4850 0.8401 -0.0004 26 1 2.6931 -3.6958 0.7265 27 1 1.5410 -5.7616 0.0649 28 1 -3.3200 -4.9798 -0.5313 29 1 -3.7981 -6.4715 -1.3857 30 1 -4.6752 -5.8108 1.1720 31 1 -4.5456 -7.4988 0.5777 32 1 -3.1054 -5.2018 2.9249 33 1 -1.8739 -8.4003 0.5650 34 1 -0.7371 -7.1692 1.1953 35 1 -1.2778 -3.5000 -2.2108 36 1 -0.1510 -1.4139 -1.5691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:27 Heat of formation + Delta-G solvation = -131.174414 kcal Electronic energy + Delta-G solvation = -22219.589922 eV Core-core repulsion = 18794.064963 eV Total energy + Delta-G solvation = -3425.524958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.81606 -39.39679 -38.20634 -36.84532 -36.23743 -35.81855 -32.08711 -31.32668 -31.08427 -29.60670 -27.63375 -23.59126 -23.23205 -22.94822 -22.08832 -19.99926 -19.45203 -18.82559 -18.44819 -18.13566 -17.21839 -16.65550 -16.20735 -15.85313 -15.48968 -15.25462 -15.04597 -14.69815 -14.32727 -14.12478 -13.99797 -13.65587 -13.60876 -13.30264 -13.17723 -13.08280 -12.93547 -12.89772 -12.62492 -12.47954 -12.25858 -11.99189 -11.75967 -11.57602 -11.35529 -11.24168 -10.83528 -9.93734 -9.76396 -9.57556 -8.88285 -6.66068 -0.39952 0.46741 1.03262 1.35070 1.41392 1.52649 2.11093 2.16940 2.51090 2.90758 3.20777 3.35057 3.51203 3.78105 3.83231 4.16263 4.25256 4.27646 4.39607 4.55182 4.69458 4.82220 4.84493 4.86831 4.91381 4.98444 5.07246 5.12372 5.21969 5.23920 5.47938 5.54066 5.58207 5.75269 5.91215 6.13038 6.46672 6.66352 6.79032 7.01080 8.07370 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.004829 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.342820 B = 5796.701266 C = 6315.644225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.034 3.966 3 Si 0.994 3.006 4 H -0.254 1.254 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.465 4.465 8 H 0.092 0.908 9 C 0.111 3.889 10 C -0.257 4.257 11 C -0.001 4.001 12 C -0.797 4.797 13 S 2.735 3.265 14 O -0.999 6.999 15 O -0.996 6.996 16 N -1.012 6.012 17 C 0.111 3.889 18 C -0.146 4.146 19 C 0.093 3.907 20 H 0.114 0.886 21 O -0.583 6.583 22 C 0.112 3.888 23 C -0.021 4.021 24 C -0.206 4.206 25 H 0.299 0.701 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.394 0.606 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 -7.484 5.507 12.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.110 0.890 9 C 0.107 3.893 10 C -0.277 4.277 11 C -0.021 4.021 12 C -0.890 4.890 13 S 2.833 3.167 14 O -0.990 6.990 15 O -0.987 6.987 16 N -0.851 5.851 17 C -0.014 4.014 18 C -0.184 4.184 19 C 0.033 3.967 20 H 0.132 0.868 21 O -0.391 6.391 22 C -0.013 4.013 23 C -0.041 4.041 24 C -0.226 4.226 25 H 0.110 0.890 26 H 0.129 0.871 27 H 0.139 0.861 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.244 0.756 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.509 -8.010 4.408 12.489 hybrid contribution 0.076 1.633 0.530 1.719 sum -8.432 -6.377 4.937 11.668 Atomic orbital electron populations 1.69866 1.09411 1.31814 1.30747 1.27044 0.95612 1.05244 0.90655 0.84976 0.79418 0.74942 0.79380 1.17762 1.18563 1.18372 1.20247 0.98933 0.92068 1.37953 0.89039 1.18208 0.90663 0.93314 0.87103 1.21263 1.05190 0.92859 1.08402 1.20401 0.92104 0.97710 0.91899 1.29748 1.16524 1.17160 1.25606 0.99968 0.71631 0.73024 0.72051 1.93439 1.75010 1.86549 1.44028 1.93444 1.61617 1.56567 1.87054 1.58509 1.22790 1.65653 1.38181 1.21881 0.80047 0.98813 1.00687 1.23368 0.97478 1.04101 0.93497 1.23139 0.92630 0.87421 0.93549 0.86816 1.86609 1.44135 1.40481 1.67915 1.22409 1.00346 0.95720 0.82792 1.20410 0.96766 0.91916 0.94992 1.21337 1.00991 0.96970 1.03329 0.89007 0.87077 0.86142 0.93275 0.90586 0.88027 0.86942 0.75559 0.87337 0.91696 0.87091 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.18 10.95 21.82 0.24 -38.94 16 2 C 0.03 1.60 5.14 85.25 0.44 2.04 16 3 Si 0.99 35.24 29.60 68.60 2.03 37.27 16 4 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 5 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 6 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 7 C -0.47 -24.06 9.05 23.46 0.21 -23.85 16 8 H 0.09 4.48 7.91 -2.91 -0.02 4.45 16 9 C 0.11 6.02 5.58 -21.29 -0.12 5.90 16 10 C -0.26 -13.08 9.80 22.73 0.22 -12.86 16 11 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 12 C -0.80 -37.96 6.00 22.46 0.13 -37.82 16 13 S 2.74 112.24 5.93 -56.49 -0.34 111.91 16 14 O -1.00 -44.57 16.85 -128.00 -2.16 -46.72 16 15 O -1.00 -43.40 16.84 -128.00 -2.16 -45.55 16 16 N -1.01 -32.63 3.70 -506.01 -1.87 -34.50 16 17 C 0.11 2.92 6.99 86.73 0.61 3.53 16 18 C -0.15 -2.37 6.68 31.78 0.21 -2.16 16 19 C 0.09 1.78 4.43 32.06 0.14 1.92 16 20 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 21 O -0.58 -14.76 13.48 -148.98 -2.01 -16.77 16 22 C 0.11 2.89 6.73 86.93 0.59 3.48 16 23 C -0.02 -1.05 9.49 22.22 0.21 -0.84 16 24 C -0.21 -11.13 8.70 22.73 0.20 -10.93 16 25 H 0.30 12.95 8.30 -92.70 -0.77 12.18 16 26 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 27 H 0.12 5.20 7.60 -2.91 -0.02 5.18 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.20 8.14 -2.38 -0.02 1.19 16 32 H 0.39 6.17 9.11 -74.06 -0.68 5.49 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.11 5.18 7.60 -2.91 -0.02 5.16 16 36 H 0.11 6.11 6.15 -2.91 -0.02 6.10 16 Total: -1.00 -71.51 318.47 -2.77 -74.28 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.43 Total: 30.46 kcal Atomic # 6 Polarization: -74.49 SS G_CDS: 3.05 Total: -71.43 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.63 Total: -73.44 kcal Atomic # 8 Polarization: -102.73 SS G_CDS: -6.32 Total: -109.05 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Atomic # 16 Polarization: 112.24 SS G_CDS: -0.34 Total: 111.91 kcal Total: -71.51 -2.77 -74.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.894 kcal (2) G-P(sol) polarization free energy of solvation -71.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds