Wall clock time and date at job start Tue Mar 31 2020 07:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47352 * 2 1 4 4 C 1.50703 * 109.46905 * 119.99997 * 2 1 3 5 5 H 1.08003 * 120.00285 * 119.99883 * 4 2 1 6 6 C 1.37876 * 119.99816 * 299.71741 * 4 2 1 7 7 N 1.31517 * 120.00234 * 0.28580 * 6 4 2 8 8 Si 1.86801 * 119.99841 * 180.27641 * 6 4 2 9 9 H 1.48498 * 109.47313 * 60.00700 * 8 6 4 10 10 H 1.48508 * 109.47013 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47294 * 300.00420 * 8 6 4 12 12 S 1.81405 * 109.46891 * 239.99490 * 2 1 3 13 13 C 1.76196 * 102.99721 * 68.42413 * 12 2 1 14 14 C 1.38726 * 120.10537 * 5.54093 * 13 12 2 15 15 C 1.38250 * 119.99952 * 179.97438 * 14 13 12 16 16 C 1.38266 * 120.19419 * 0.02562 * 15 14 13 17 17 C 1.38293 * 120.20326 * 0.02562 * 16 15 14 18 18 C 1.38647 * 120.00335 * 359.69693 * 17 16 15 19 19 N 1.40003 * 120.09490 * 180.28030 * 18 17 16 20 20 C 1.46498 * 120.00537 * 0.29395 * 19 18 17 21 21 C 1.50694 * 109.47362 * 180.02562 * 20 19 18 22 22 C 1.31162 * 120.00051 * 125.00450 * 21 20 19 23 23 Cl 1.73600 * 120.00001 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.47115 * 186.26020 * 1 2 3 25 25 H 1.09001 * 109.47035 * 306.25961 * 1 2 3 26 26 H 1.09000 * 109.47308 * 66.25642 * 1 2 3 27 27 H 0.96993 * 119.99932 * 180.02562 * 7 6 4 28 28 H 1.08011 * 120.00264 * 359.97438 * 14 13 12 29 29 H 1.07991 * 119.90539 * 179.97438 * 15 14 13 30 30 H 1.08001 * 119.89942 * 179.97438 * 16 15 14 31 31 H 1.07998 * 119.99449 * 180.02562 * 17 16 15 32 32 H 0.97006 * 119.99448 * 180.30525 * 19 18 17 33 33 H 1.08997 * 109.47341 * 300.00930 * 20 19 18 34 34 H 1.08999 * 109.46460 * 60.00296 * 20 19 18 35 35 H 1.08003 * 120.00393 * 305.00455 * 21 20 19 36 36 H 1.07993 * 119.99893 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.7040 -0.2359 2.4827 7 7 0.9478 0.8333 2.6034 8 14 2.3330 -1.1120 4.0079 9 1 3.8179 -1.1114 4.0022 10 1 1.8420 -0.4091 5.2205 11 1 1.8385 -2.5123 4.0138 12 16 2.1346 -0.8553 -1.4811 13 6 1.6715 0.2352 -2.7853 14 6 1.1091 1.4694 -2.4937 15 6 0.7470 2.3235 -3.5186 16 6 0.9430 1.9516 -4.8358 17 6 1.5020 0.7227 -5.1359 18 6 1.8735 -0.1380 -4.1144 19 7 2.4450 -1.3800 -4.4159 20 6 2.6572 -1.7692 -5.8122 21 6 3.2802 -3.1404 -5.8624 22 6 2.7090 -4.0953 -6.5569 23 17 3.4264 -5.6751 -6.6142 24 1 -0.3633 -1.0215 0.1121 25 1 -0.3633 0.6078 0.8287 26 1 -0.3634 0.4138 -0.9407 27 1 0.7172 1.1673 3.4843 28 1 0.9541 1.7630 -1.4658 29 1 0.3089 3.2837 -3.2899 30 1 0.6580 2.6224 -5.6328 31 1 1.6540 0.4358 -6.1659 32 1 2.7003 -1.9829 -3.7001 33 1 1.7005 -1.7858 -6.3342 34 1 3.3208 -1.0504 -6.2928 35 1 4.1970 -3.3370 -5.3264 36 1 1.7920 -3.8989 -7.0925 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131708553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:42 Heat of formation + Delta-G solvation = 14.840426 kcal Electronic energy + Delta-G solvation = -18515.467774 eV Core-core repulsion = 15536.983659 eV Total energy + Delta-G solvation = -2978.484115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 297.065 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22658 -37.91960 -37.02156 -36.10388 -33.98101 -32.76223 -31.48762 -29.92505 -27.39356 -26.44596 -23.76795 -23.43000 -22.32269 -21.23139 -19.13112 -18.05359 -17.58249 -17.44375 -16.90848 -16.36097 -15.75701 -15.47431 -15.11535 -15.02479 -14.74778 -14.39671 -14.24567 -13.75989 -13.65440 -13.30837 -13.11963 -12.90505 -12.85769 -12.59071 -12.50456 -12.37588 -12.14144 -11.82524 -11.57579 -11.34270 -11.06204 -10.77147 -10.51680 -10.37417 -10.14022 -8.76928 -8.24796 -7.81470 -6.41074 0.46795 0.72833 0.74713 1.02789 1.30164 1.41154 1.42392 1.51136 1.96812 2.37586 2.71403 2.96642 3.05064 3.86224 4.01969 4.03439 4.27836 4.45486 4.51273 4.59382 4.60422 4.62865 4.82266 4.82949 4.85340 5.04801 5.17084 5.25952 5.31509 5.33516 5.52479 5.57542 5.72296 5.76198 5.98567 6.01125 6.45320 6.61107 6.70337 7.26185 8.81318 Molecular weight = 297.06amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.003914 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.568687 B = 7151.615521 C = 9051.553729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.102 3.898 3 H 0.020 0.980 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.027 3.973 7 N -0.910 5.910 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.277 1.277 11 H -0.270 1.270 12 S -0.192 6.192 13 C -0.164 4.164 14 C -0.108 4.108 15 C -0.169 4.169 16 C -0.077 4.077 17 C -0.184 4.184 18 C 0.220 3.780 19 N -0.747 5.747 20 C 0.163 3.837 21 C -0.163 4.163 22 C -0.081 4.081 23 Cl -0.102 7.102 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.269 0.731 28 H 0.104 0.896 29 H 0.133 0.867 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.398 0.602 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -3.545 -20.275 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.026 4.026 3 H 0.038 0.962 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.195 1.195 12 S 0.053 5.947 13 C -0.281 4.281 14 C -0.133 4.133 15 C -0.190 4.190 16 C -0.098 4.098 17 C -0.209 4.209 18 C 0.111 3.889 19 N -0.378 5.378 20 C 0.040 3.960 21 C -0.182 4.182 22 C -0.126 4.126 23 Cl -0.074 7.074 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.151 0.849 30 H 0.174 0.826 31 H 0.172 0.828 32 H 0.233 0.767 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.139 0.861 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.830 -4.712 -20.323 20.942 hybrid contribution -0.175 0.564 1.732 1.830 sum 1.654 -4.149 -18.591 19.120 Atomic orbital electron populations 1.21886 0.95981 1.00329 0.99920 1.20726 0.95768 0.95789 0.90303 0.96206 1.20880 1.33086 1.13241 0.90190 0.92422 1.25687 0.94688 0.95538 1.01573 1.69982 1.36510 1.23416 1.24900 0.85464 0.78835 0.78690 0.77849 1.19541 1.20171 1.19456 1.84599 1.75481 1.33615 1.01046 1.21421 1.11439 0.99785 0.95419 1.21171 0.98947 0.93270 0.99876 1.21063 1.04757 1.00327 0.92879 1.21246 0.96513 0.95885 0.96194 1.20858 1.06650 0.95203 0.98161 1.17488 0.93679 0.87007 0.90693 1.44843 1.68886 1.16490 1.07605 1.20348 1.00662 0.92393 0.82565 1.23151 1.00849 0.94468 0.99749 1.24723 1.00100 0.84847 1.02942 1.98387 1.83809 1.27706 1.97468 0.94900 0.91342 0.94558 0.92219 0.87813 0.84893 0.82582 0.82829 0.76670 0.89873 0.89446 0.86076 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.35 71.98 0.60 -5.45 16 2 C 0.10 5.31 1.98 29.85 0.06 5.37 16 3 H 0.02 1.13 6.97 -2.39 -0.02 1.12 16 4 C -0.53 -29.94 8.58 25.60 0.22 -29.72 16 5 H 0.06 3.24 7.71 -2.91 -0.02 3.21 16 6 C 0.03 1.48 5.31 84.65 0.45 1.93 16 7 N -0.91 -51.34 11.40 21.45 0.24 -51.10 16 8 Si 0.97 43.18 29.54 68.60 2.03 45.20 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 12 S -0.19 -8.54 19.76 -56.49 -1.12 -9.65 16 13 C -0.16 -6.34 5.97 22.70 0.14 -6.20 16 14 C -0.11 -4.13 7.96 22.39 0.18 -3.95 16 15 C -0.17 -5.03 10.04 22.28 0.22 -4.81 16 16 C -0.08 -1.84 10.04 22.29 0.22 -1.62 16 17 C -0.18 -4.47 9.31 22.38 0.21 -4.26 16 18 C 0.22 6.78 6.66 38.24 0.25 7.04 16 19 N -0.75 -19.63 5.68 -342.56 -1.94 -21.58 16 20 C 0.16 2.73 5.36 85.63 0.46 3.19 16 21 C -0.16 -2.60 9.36 25.48 0.24 -2.37 16 22 C -0.08 -1.16 10.43 67.62 0.71 -0.46 16 23 Cl -0.10 -1.76 29.10 -2.72 -0.08 -1.84 16 24 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 3.66 6.27 -2.39 -0.01 3.65 16 26 H 0.04 1.64 5.89 -2.39 -0.01 1.62 16 27 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.10 4.50 4.93 -2.90 -0.01 4.49 16 29 H 0.13 3.39 8.06 -2.92 -0.02 3.36 16 30 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 31 H 0.15 2.56 6.74 -2.91 -0.02 2.54 16 32 H 0.40 11.77 7.01 -92.70 -0.65 11.12 16 33 H 0.08 1.11 7.60 -2.39 -0.02 1.09 16 34 H 0.09 1.25 7.96 -2.39 -0.02 1.23 16 35 H 0.12 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.17 1.64 7.84 -2.91 -0.02 1.62 16 Total: -1.00 -62.42 325.67 3.53 -58.88 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.45 Total: 21.38 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 3.96 Total: -41.31 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.70 Total: -72.68 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.12 Total: -9.65 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.84 kcal Total: -62.42 3.53 -58.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131708553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.725 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds