Wall clock time and date at job start Tue Mar 31 2020 07:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37718 * 119.95458 * 2 1 4 4 C 1.39721 * 119.90851 * 180.02562 * 3 2 1 5 5 C 1.47577 * 120.08833 * 180.02562 * 4 3 2 6 6 O 1.21599 * 119.99981 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99955 * 180.02562 * 5 4 3 8 8 C 1.39868 * 119.99796 * 174.85948 * 7 5 4 9 9 C 1.39304 * 119.94757 * 146.34715 * 8 7 5 10 10 C 1.38487 * 120.42961 * 179.97438 * 9 8 7 11 11 C 1.37687 * 120.31861 * 0.02562 * 10 9 8 12 12 C 1.40746 * 119.89207 * 359.97438 * 11 10 9 13 13 C 1.41407 * 120.20737 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99675 * 151.80449 * 13 12 11 15 15 C 1.39932 * 120.00107 * 331.79589 * 13 12 11 16 16 N 1.30826 * 119.99764 * 348.99777 * 15 13 12 17 17 Si 1.86803 * 119.99738 * 168.99696 * 15 13 12 18 18 H 1.48496 * 109.46931 * 60.00370 * 17 15 13 19 19 H 1.48508 * 109.46645 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47200 * 299.99950 * 17 15 13 21 21 C 1.38254 * 119.94988 * 326.08002 * 8 7 5 22 22 C 1.39762 * 119.82616 * 359.72603 * 4 3 2 23 23 C 1.37685 * 119.90721 * 0.50324 * 22 4 3 24 24 C 1.38977 * 119.95575 * 179.97438 * 2 1 3 25 25 O 1.35715 * 119.90785 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.47129 * 270.02156 * 1 2 3 27 27 H 1.08998 * 109.47616 * 30.02149 * 1 2 3 28 28 H 1.09000 * 109.47274 * 150.02444 * 1 2 3 29 29 H 1.08004 * 120.04659 * 0.02562 * 3 2 1 30 30 H 0.96998 * 120.00231 * 354.85620 * 7 5 4 31 31 H 1.08010 * 119.78780 * 0.02562 * 9 8 7 32 32 H 1.08001 * 119.83608 * 180.02562 * 10 9 8 33 33 H 1.07996 * 120.05297 * 179.97438 * 11 10 9 34 34 H 0.97002 * 119.99812 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.16428 * 359.97438 * 21 8 7 36 36 H 1.08001 * 120.05318 * 180.28195 * 22 4 3 37 37 H 1.07991 * 119.95548 * 179.79772 * 23 22 4 38 38 H 0.96705 * 113.99886 * 270.01743 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1932 0.0000 4 6 3.5918 1.1921 -0.0005 5 6 4.3327 2.4684 0.0000 6 8 3.7272 3.5229 0.0005 7 7 5.6805 2.4652 -0.0010 8 6 6.3826 3.6701 -0.1090 9 6 7.6013 3.8261 0.5474 10 6 8.3050 5.0146 0.4469 11 6 7.8068 6.0561 -0.3033 12 6 6.5767 5.9131 -0.9722 13 6 6.0586 6.9786 -1.7441 14 1 5.4143 6.7720 -2.5860 15 6 6.3803 8.3006 -1.4170 16 7 6.9762 8.5675 -0.2834 17 14 5.9589 9.6842 -2.5992 18 1 4.4909 9.7164 -2.8203 19 1 6.4008 10.9795 -2.0228 20 1 6.6497 9.4566 -3.8939 21 6 5.8686 4.7025 -0.8716 22 6 4.2860 -0.0209 0.0047 23 6 3.5911 -1.2096 -0.0001 24 6 2.2010 -1.2041 0.0005 25 8 1.5196 -2.3778 0.0016 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6546 2.1286 0.0004 30 1 6.1636 1.6274 0.0732 31 1 8.0004 3.0146 1.1380 32 1 9.2492 5.1250 0.9595 33 1 8.3590 6.9812 -0.3784 34 1 7.1996 9.4838 -0.0568 35 1 4.9261 4.5810 -1.3848 36 1 5.3660 -0.0261 0.0089 37 1 4.1267 -2.1473 0.0007 38 1 1.3222 -2.7172 0.8853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313428708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:03 Heat of formation + Delta-G solvation = -35.569584 kcal Electronic energy + Delta-G solvation = -22309.036879 eV Core-core repulsion = 18888.046800 eV Total energy + Delta-G solvation = -3420.990078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47791 -39.31157 -37.32983 -36.47884 -34.53094 -33.29122 -32.69508 -30.45700 -29.80425 -28.19671 -26.88128 -25.29294 -23.85677 -22.20646 -21.33913 -20.82443 -19.58349 -18.56803 -17.92155 -17.14854 -16.16387 -15.73089 -15.39356 -15.05904 -14.70446 -14.68139 -14.40499 -13.96709 -13.61548 -13.46068 -13.04447 -12.92660 -12.72524 -12.25529 -12.21212 -12.09867 -11.84495 -11.63969 -11.28484 -11.09698 -10.69405 -10.65117 -10.49281 -10.14206 -9.75923 -9.51855 -9.16284 -9.07700 -8.88722 -8.75809 -7.41134 -6.89149 -6.64717 -4.33174 0.63092 1.11760 2.62252 2.85562 3.10819 3.13747 3.14730 3.25020 3.55379 3.79364 3.95149 4.00070 4.53715 4.62207 4.69191 4.84457 5.03023 5.14722 5.35393 5.41483 5.48387 5.72274 5.72882 5.88995 6.00492 6.15518 6.21327 6.26165 6.38220 6.50929 6.74683 7.01973 7.04870 7.09250 7.28694 7.33042 7.55915 7.72941 7.97234 8.10073 8.16416 8.27430 8.62835 8.72336 8.96151 8.99614 10.28747 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.023508 B = 0.003234 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.785180 B = 8656.325309 C = 9606.467457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C -0.047 4.047 4 C -0.128 4.128 5 C 0.545 3.455 6 O -0.509 6.509 7 N -0.662 5.662 8 C 0.148 3.852 9 C -0.258 4.258 10 C -0.094 4.094 11 C -0.167 4.167 12 C 0.119 3.881 13 C -0.458 4.458 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.801 5.801 17 Si 0.912 3.088 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.207 4.207 22 C -0.078 4.078 23 C -0.149 4.149 24 C 0.121 3.879 25 O -0.496 6.496 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.142 0.858 30 H 0.397 0.603 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.279 0.721 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -17.187 2.381 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.065 4.065 4 C -0.131 4.131 5 C 0.332 3.668 6 O -0.385 6.385 7 N -0.306 5.306 8 C 0.057 3.943 9 C -0.279 4.279 10 C -0.113 4.113 11 C -0.187 4.187 12 C 0.116 3.884 13 C -0.488 4.488 14 H 0.094 0.906 15 C -0.143 4.143 16 N -0.427 5.427 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.228 4.228 22 C -0.097 4.097 23 C -0.167 4.167 24 C 0.076 3.924 25 O -0.306 6.306 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.160 0.840 30 H 0.232 0.768 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.077 -16.176 1.900 17.758 hybrid contribution 0.127 0.095 0.219 0.270 sum -6.950 -16.081 2.118 17.646 Atomic orbital electron populations 1.20701 0.90192 1.03489 1.02475 1.20188 0.97102 0.92148 1.02591 1.21124 0.92649 0.98154 0.94614 1.20116 0.94402 0.93226 1.05389 1.18181 0.82322 0.88674 0.77575 1.90858 1.67990 1.32075 1.47541 1.43353 1.05741 1.09179 1.72316 1.17420 0.92711 0.85535 0.98661 1.20054 0.98708 0.99247 1.09922 1.20482 0.98109 0.93366 0.99340 1.21420 0.96702 0.98380 1.02164 1.17499 0.89909 0.90947 0.90041 1.19521 1.26464 0.90190 1.12647 0.90575 1.25880 0.93195 1.00294 0.94932 1.69793 1.31529 1.21727 1.19675 0.86310 0.79894 0.79167 0.80970 1.19027 1.20376 1.18905 1.20993 1.01158 0.95331 1.05314 1.21204 0.99997 0.91200 0.97291 1.21295 0.93339 0.98781 1.03282 1.18490 0.89735 0.84847 0.99296 1.84736 1.76209 1.36160 1.33506 0.91163 0.91042 0.90805 0.84011 0.76802 0.89265 0.88965 0.86029 0.90961 0.87530 0.85093 0.84830 0.75287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.78 36.01 0.35 -0.61 16 2 C -0.12 -1.33 5.89 -104.54 -0.62 -1.94 16 3 C -0.05 -0.63 9.23 -39.22 -0.36 -0.99 16 4 C -0.13 -1.85 5.87 -104.96 -0.62 -2.47 16 5 C 0.55 10.28 7.49 -12.45 -0.09 10.18 16 6 O -0.51 -11.87 14.05 5.28 0.07 -11.79 16 7 N -0.66 -12.11 5.28 -10.84 -0.06 -12.17 16 8 C 0.15 3.40 6.26 -83.79 -0.52 2.88 16 9 C -0.26 -5.70 9.97 -39.09 -0.39 -6.09 16 10 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 11 C -0.17 -4.41 8.66 -38.84 -0.34 -4.75 16 12 C 0.12 3.31 5.55 -106.85 -0.59 2.71 16 13 C -0.46 -12.72 9.06 -37.74 -0.34 -13.06 16 14 H 0.08 2.05 7.87 -52.48 -0.41 1.64 16 15 C 0.07 1.91 5.25 -17.35 -0.09 1.82 16 16 N -0.80 -21.37 10.81 55.55 0.60 -20.77 16 17 Si 0.91 19.40 29.57 -169.99 -5.03 14.37 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.21 -5.43 8.39 -38.68 -0.32 -5.75 16 22 C -0.08 -0.88 9.53 -39.21 -0.37 -1.25 16 23 C -0.15 -1.47 9.97 -39.49 -0.39 -1.86 16 24 C 0.12 1.24 6.68 -39.02 -0.26 0.98 16 25 O -0.50 -4.10 12.52 -18.85 -0.24 -4.34 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.07 0.60 7.52 -51.93 -0.39 0.21 16 29 H 0.14 1.98 7.64 -52.48 -0.40 1.58 16 30 H 0.40 5.56 6.85 -40.82 -0.28 5.28 16 31 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.12 3.30 6.18 -52.49 -0.32 2.97 16 34 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 35 H 0.11 2.89 6.44 -52.49 -0.34 2.55 16 36 H 0.13 1.18 6.41 -52.49 -0.34 0.85 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.39 1.36 9.06 45.56 0.41 1.78 16 LS Contribution 327.85 15.07 4.94 4.94 Total: -1.00 -32.96 327.85 -8.38 -41.35 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.32 Total: 11.22 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -5.36 Total: -22.81 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.54 Total: -32.94 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.16 Total: -16.13 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.96 -8.38 -41.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313428708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.776 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds