Wall clock time and date at job start Tue Mar 31 2020 07:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37718 * 119.95458 * 2 1 4 4 C 1.39721 * 119.90851 * 180.02562 * 3 2 1 5 5 C 1.47577 * 120.08833 * 180.02562 * 4 3 2 6 6 O 1.21599 * 119.99981 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99955 * 180.02562 * 5 4 3 8 8 C 1.39868 * 119.99796 * 174.85948 * 7 5 4 9 9 C 1.39304 * 119.94757 * 146.34715 * 8 7 5 10 10 C 1.38487 * 120.42961 * 179.97438 * 9 8 7 11 11 C 1.37687 * 120.31861 * 0.02562 * 10 9 8 12 12 C 1.40746 * 119.89207 * 359.97438 * 11 10 9 13 13 C 1.41407 * 120.20737 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99675 * 151.80449 * 13 12 11 15 15 C 1.39932 * 120.00107 * 331.79589 * 13 12 11 16 16 N 1.30826 * 119.99764 * 348.99777 * 15 13 12 17 17 Si 1.86803 * 119.99738 * 168.99696 * 15 13 12 18 18 H 1.48496 * 109.46931 * 60.00370 * 17 15 13 19 19 H 1.48508 * 109.46645 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47200 * 299.99950 * 17 15 13 21 21 C 1.38254 * 119.94988 * 326.08002 * 8 7 5 22 22 C 1.39762 * 119.82616 * 359.72603 * 4 3 2 23 23 C 1.37685 * 119.90721 * 0.50324 * 22 4 3 24 24 C 1.38977 * 119.95575 * 179.97438 * 2 1 3 25 25 O 1.35715 * 119.90785 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.47129 * 270.02156 * 1 2 3 27 27 H 1.08998 * 109.47616 * 30.02149 * 1 2 3 28 28 H 1.09000 * 109.47274 * 150.02444 * 1 2 3 29 29 H 1.08004 * 120.04659 * 0.02562 * 3 2 1 30 30 H 0.96998 * 120.00231 * 354.85620 * 7 5 4 31 31 H 1.08010 * 119.78780 * 0.02562 * 9 8 7 32 32 H 1.08001 * 119.83608 * 180.02562 * 10 9 8 33 33 H 1.07996 * 120.05297 * 179.97438 * 11 10 9 34 34 H 0.97002 * 119.99812 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.16428 * 359.97438 * 21 8 7 36 36 H 1.08001 * 120.05318 * 180.28195 * 22 4 3 37 37 H 1.07991 * 119.95548 * 179.79772 * 23 22 4 38 38 H 0.96705 * 113.99886 * 270.01743 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1932 0.0000 4 6 3.5918 1.1921 -0.0005 5 6 4.3327 2.4684 0.0000 6 8 3.7272 3.5229 0.0005 7 7 5.6805 2.4652 -0.0010 8 6 6.3826 3.6701 -0.1090 9 6 7.6013 3.8261 0.5474 10 6 8.3050 5.0146 0.4469 11 6 7.8068 6.0561 -0.3033 12 6 6.5767 5.9131 -0.9722 13 6 6.0586 6.9786 -1.7441 14 1 5.4143 6.7720 -2.5860 15 6 6.3803 8.3006 -1.4170 16 7 6.9762 8.5675 -0.2834 17 14 5.9589 9.6842 -2.5992 18 1 4.4909 9.7164 -2.8203 19 1 6.4008 10.9795 -2.0228 20 1 6.6497 9.4566 -3.8939 21 6 5.8686 4.7025 -0.8716 22 6 4.2860 -0.0209 0.0047 23 6 3.5911 -1.2096 -0.0001 24 6 2.2010 -1.2041 0.0005 25 8 1.5196 -2.3778 0.0016 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6546 2.1286 0.0004 30 1 6.1636 1.6274 0.0732 31 1 8.0004 3.0146 1.1380 32 1 9.2492 5.1250 0.9595 33 1 8.3590 6.9812 -0.3784 34 1 7.1996 9.4838 -0.0568 35 1 4.9261 4.5810 -1.3848 36 1 5.3660 -0.0261 0.0089 37 1 4.1267 -2.1473 0.0007 38 1 1.3222 -2.7172 0.8853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313428708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:02 Heat of formation + Delta-G solvation = -57.562193 kcal Electronic energy + Delta-G solvation = -22309.990550 eV Core-core repulsion = 18888.046800 eV Total energy + Delta-G solvation = -3421.943750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69274 -40.51343 -39.00889 -37.45451 -36.29151 -34.94954 -33.74276 -31.77064 -31.52006 -29.81056 -27.78128 -27.27061 -25.09227 -23.17298 -22.93196 -22.62099 -21.05352 -19.69145 -19.29066 -18.58149 -17.55091 -17.14380 -16.55079 -16.48804 -16.42657 -16.08568 -15.87782 -15.10121 -14.95428 -14.66415 -14.42397 -14.16621 -14.03804 -13.66020 -13.61750 -13.14265 -13.05956 -12.87226 -12.84804 -12.75347 -12.57570 -12.23749 -11.99386 -11.61662 -11.44126 -11.28862 -10.99391 -10.69422 -9.96551 -9.65844 -9.38528 -8.74519 -8.59081 -6.40284 -0.36045 0.25153 0.90682 0.99323 1.35227 1.47534 1.49584 1.80443 2.11247 2.21690 2.65231 2.77067 3.17776 3.64596 3.70859 3.73502 3.84313 4.14023 4.28828 4.44560 4.55900 4.61217 4.71679 4.78476 4.86765 5.00029 5.07716 5.09983 5.12231 5.16604 5.21162 5.27075 5.32566 5.38540 5.68829 5.74660 5.83240 6.05655 6.09357 6.32835 6.57029 6.67166 6.81284 6.92351 6.98548 7.22545 8.36109 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.023508 B = 0.003234 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.785180 B = 8656.325309 C = 9606.467457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.126 4.126 3 C -0.062 4.062 4 C -0.154 4.154 5 C 0.544 3.456 6 O -0.567 6.567 7 N -0.650 5.650 8 C 0.153 3.847 9 C -0.244 4.244 10 C -0.092 4.092 11 C -0.192 4.192 12 C 0.088 3.912 13 C -0.504 4.504 14 H 0.065 0.935 15 C 0.033 3.967 16 N -0.831 5.831 17 Si 0.986 3.014 18 H -0.266 1.266 19 H -0.262 1.262 20 H -0.257 1.257 21 C -0.234 4.234 22 C -0.068 4.068 23 C -0.143 4.143 24 C 0.138 3.862 25 O -0.497 6.497 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.421 0.579 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.288 0.712 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 -20.244 3.116 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.127 4.127 3 C -0.081 4.081 4 C -0.157 4.157 5 C 0.334 3.666 6 O -0.446 6.446 7 N -0.296 5.296 8 C 0.060 3.940 9 C -0.265 4.265 10 C -0.111 4.111 11 C -0.212 4.212 12 C 0.085 3.915 13 C -0.534 4.534 14 H 0.083 0.917 15 C -0.181 4.181 16 N -0.458 5.458 17 Si 0.806 3.194 18 H -0.191 1.191 19 H -0.186 1.186 20 H -0.181 1.181 21 C -0.256 4.256 22 C -0.087 4.087 23 C -0.161 4.161 24 C 0.093 3.907 25 O -0.311 6.311 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.139 0.861 30 H 0.260 0.740 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -6.598 -19.313 2.665 20.582 hybrid contribution -0.087 0.760 0.083 0.769 sum -6.685 -18.553 2.748 19.911 Atomic orbital electron populations 1.20738 0.88655 1.03689 1.03573 1.20384 0.98296 0.91688 1.02341 1.21081 0.92606 0.98552 0.95865 1.19804 0.94455 0.92096 1.09366 1.18934 0.82264 0.89696 0.75713 1.90829 1.69025 1.34644 1.50112 1.43204 1.05765 1.08712 1.71904 1.17519 0.93123 0.86302 0.97010 1.20512 0.97567 0.99872 1.08591 1.20874 0.99262 0.92816 0.98109 1.21395 0.96661 0.99152 1.04010 1.17836 0.90917 0.91701 0.91000 1.19747 1.28241 0.91882 1.13514 0.91708 1.26735 0.92644 1.02193 0.96523 1.69844 1.32169 1.22789 1.20966 0.85210 0.79424 0.76080 0.78670 1.19107 1.18564 1.18083 1.20949 1.00756 0.96707 1.07191 1.21419 1.01189 0.90197 0.95849 1.21622 0.93266 0.99392 1.01856 1.18584 0.90120 0.85069 0.96973 1.84679 1.75870 1.34916 1.35666 0.89579 0.91600 0.89817 0.86092 0.73989 0.84675 0.85588 0.87456 0.90147 0.89919 0.82677 0.81536 0.72338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.78 71.24 0.70 -1.04 16 2 C -0.13 -2.62 5.89 -19.81 -0.12 -2.74 16 3 C -0.06 -1.70 9.23 22.51 0.21 -1.49 16 4 C -0.15 -4.42 5.87 -20.09 -0.12 -4.53 16 5 C 0.54 21.08 7.49 86.71 0.65 21.73 16 6 O -0.57 -28.28 14.05 -4.03 -0.06 -28.34 16 7 N -0.65 -23.38 5.28 -306.46 -1.62 -25.00 16 8 C 0.15 7.07 6.26 38.12 0.24 7.31 16 9 C -0.24 -10.31 9.97 22.59 0.23 -10.08 16 10 C -0.09 -4.22 10.02 22.20 0.22 -3.99 16 11 C -0.19 -10.50 8.66 22.75 0.20 -10.30 16 12 C 0.09 5.18 5.55 -21.31 -0.12 5.06 16 13 C -0.50 -29.84 9.06 23.46 0.21 -29.63 16 14 H 0.06 3.79 7.87 -2.91 -0.02 3.77 16 15 C 0.03 1.76 5.25 85.25 0.45 2.21 16 16 N -0.83 -45.94 10.81 21.82 0.24 -45.70 16 17 Si 0.99 41.07 29.57 68.60 2.03 43.10 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 C -0.23 -13.01 8.39 22.85 0.19 -12.82 16 22 C -0.07 -1.34 9.53 22.51 0.21 -1.12 16 23 C -0.14 -2.25 9.97 22.33 0.22 -2.03 16 24 C 0.14 2.35 6.68 22.63 0.15 2.51 16 25 O -0.50 -6.10 12.52 -90.37 -1.13 -7.23 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 28 H 0.08 1.16 7.52 -2.39 -0.02 1.14 16 29 H 0.12 3.72 7.64 -2.91 -0.02 3.70 16 30 H 0.42 10.69 6.85 -92.71 -0.64 10.06 16 31 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 33 H 0.11 6.07 6.18 -2.91 -0.02 6.05 16 34 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 35 H 0.08 4.88 6.44 -2.91 -0.02 4.86 16 36 H 0.16 2.18 6.41 -2.91 -0.02 2.17 16 37 H 0.17 1.57 8.06 -2.92 -0.02 1.55 16 38 H 0.42 0.95 9.06 -74.05 -0.67 0.28 16 Total: -1.00 -77.65 327.85 2.80 -74.84 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.18 Total: 29.30 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 3.53 Total: -40.97 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -1.38 Total: -70.70 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.19 Total: -35.57 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -77.65 2.80 -74.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313428708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.283 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds