Wall clock time and date at job start Tue Mar 31 2020 07:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46932 * 229.58628 * 3 2 1 5 5 C 1.36931 * 120.00101 * 262.99130 * 4 3 2 6 6 H 1.08005 * 119.99916 * 213.54875 * 5 4 3 7 7 C 1.38812 * 120.00231 * 33.54821 * 5 4 3 8 8 N 1.31617 * 119.99636 * 5.53269 * 7 5 4 9 9 Si 1.86796 * 120.00095 * 185.52902 * 7 5 4 10 10 H 1.48504 * 109.46969 * 59.99943 * 9 7 5 11 11 H 1.48496 * 109.47033 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47087 * 300.00281 * 9 7 5 13 13 C 1.46504 * 119.99406 * 82.99050 * 4 3 2 14 14 C 1.52995 * 109.47109 * 269.99473 * 13 4 3 15 15 C 1.50710 * 109.47218 * 180.02562 * 14 13 4 16 16 O 1.21276 * 119.99419 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00075 * 180.02562 * 15 14 13 18 18 C 1.39411 * 119.99970 * 185.49940 * 17 15 14 19 19 C 1.38792 * 120.15920 * 24.37619 * 18 17 15 20 20 C 1.38066 * 120.07554 * 179.97438 * 19 18 17 21 21 C 1.38538 * 120.40638 * 0.02562 * 20 19 18 22 22 C 1.37829 * 120.32652 * 359.97438 * 21 20 19 23 23 C 1.39700 * 119.91223 * 359.97438 * 22 21 20 24 24 C 1.43202 * 120.19631 * 180.02562 * 23 22 21 25 25 N 7.33642 * 61.25180 * 273.23188 * 2 1 3 26 26 H 4.40642 * 5.51409 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46650 * 109.59088 * 3 2 1 28 28 H 1.09000 * 109.46895 * 349.59060 * 3 2 1 29 29 H 0.97008 * 119.99479 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46542 * 149.99799 * 13 4 3 31 31 H 1.09000 * 109.47360 * 30.00073 * 13 4 3 32 32 H 1.09004 * 109.47152 * 60.00700 * 14 13 4 33 33 H 1.09000 * 109.47500 * 300.00515 * 14 13 4 34 34 H 0.96996 * 120.00259 * 5.50111 * 17 15 14 35 35 H 1.07999 * 119.96575 * 0.24679 * 19 18 17 36 36 H 1.07998 * 119.80101 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.83340 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.03880 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8963 1.0517 5 6 3.4980 2.1799 0.7434 6 1 4.3055 2.6558 1.2800 7 6 2.8293 2.8693 -0.2588 8 7 1.7767 2.3316 -0.8378 9 14 3.4232 4.5602 -0.7855 10 1 4.8175 4.4611 -1.2871 11 1 2.5444 5.0798 -1.8639 12 1 3.3797 5.4842 0.3762 13 6 3.2323 0.4186 2.4331 14 6 1.9166 0.6953 3.1633 15 6 2.0179 0.2044 4.5846 16 8 3.0419 -0.3150 4.9751 17 7 0.9707 0.3427 5.4215 18 6 1.1015 -0.0054 6.7651 19 6 2.3521 -0.0050 7.3670 20 6 2.4796 -0.3496 8.6979 21 6 1.3642 -0.6981 9.4419 22 6 0.1143 -0.7041 8.8610 23 6 -0.0304 -0.3568 7.5157 24 6 -1.3262 -0.3605 6.9062 25 7 -2.3545 -0.3626 6.4219 26 1 -1.0501 0.0000 -0.0003 27 1 3.0092 0.3454 -0.9682 28 1 3.0098 -1.0099 0.1857 29 1 1.3092 2.8136 -1.5379 30 1 4.0454 0.9383 2.9401 31 1 3.4298 -0.6533 2.4338 32 1 1.1035 0.1756 2.6563 33 1 1.7190 1.7672 3.1626 34 1 0.1260 0.6844 5.0891 35 1 3.2260 0.2694 6.7948 36 1 3.4550 -0.3482 9.1616 37 1 1.4746 -0.9665 10.4821 38 1 -0.7521 -0.9770 9.4453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281202940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:27 Heat of formation + Delta-G solvation = 103.702941 kcal Electronic energy + Delta-G solvation = -22499.195365 eV Core-core repulsion = 19116.537348 eV Total energy + Delta-G solvation = -3382.658017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80142 -38.77409 -36.55698 -36.19569 -34.89135 -32.15890 -31.56608 -31.49758 -30.41572 -29.04028 -26.03540 -24.75365 -24.06280 -22.89110 -21.00900 -20.05793 -19.21837 -17.54468 -17.41446 -17.10870 -16.34225 -15.61801 -15.39548 -14.98218 -14.84496 -14.29157 -14.22327 -13.93623 -13.67229 -13.34011 -13.21401 -13.01005 -12.85045 -12.68928 -12.19842 -11.95145 -11.72761 -11.48243 -11.39372 -11.15629 -10.86937 -10.71033 -10.41487 -10.30884 -10.07023 -9.66130 -9.16426 -9.00428 -8.72894 -8.44250 -8.29126 -6.88308 -5.83299 -3.45045 0.54449 1.09749 2.44978 2.66156 2.82468 2.93908 3.32702 3.38805 3.39126 3.66781 3.72243 4.16141 4.37066 4.48362 4.56828 4.71990 4.90497 5.06780 5.21948 5.24586 5.32339 5.63640 5.69968 5.78477 5.80707 5.89499 5.98742 6.03882 6.18988 6.29028 6.34729 6.63653 6.68041 6.72249 6.89824 7.14308 7.19995 7.33155 7.41461 7.71933 8.10598 8.34116 9.06616 9.19472 9.67841 10.21412 11.17053 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.003566 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.952168 B = 7850.176708 C = 8360.266656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.087 4.087 3 C 0.268 3.732 4 N -0.583 5.583 5 C -0.276 4.276 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.885 5.885 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.167 3.833 14 C -0.160 4.160 15 C 0.521 3.479 16 O -0.515 6.515 17 N -0.679 5.679 18 C 0.212 3.788 19 C -0.139 4.139 20 C -0.065 4.065 21 C -0.150 4.150 22 C -0.049 4.049 23 C -0.077 4.077 24 C 0.252 3.748 25 N -0.416 5.416 26 H 0.187 0.813 27 H 0.088 0.912 28 H 0.037 0.963 29 H 0.257 0.743 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.413 0.587 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 -5.418 17.367 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.090 4.090 3 C 0.143 3.857 4 N -0.302 5.302 5 C -0.405 4.405 6 H 0.087 0.913 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.733 3.267 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.040 3.960 14 C -0.203 4.203 15 C 0.311 3.689 16 O -0.390 6.390 17 N -0.322 5.322 18 C 0.112 3.888 19 C -0.159 4.159 20 C -0.085 4.085 21 C -0.169 4.169 22 C -0.070 4.070 23 C -0.084 4.084 24 C -0.063 4.063 25 N -0.091 5.091 26 H 0.205 0.795 27 H 0.106 0.894 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.249 0.751 35 H 0.176 0.824 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.372 -5.669 16.581 17.576 hybrid contribution -0.544 1.343 -0.304 1.480 sum -1.916 -4.326 16.277 16.950 Atomic orbital electron populations 1.24102 0.95249 1.08084 1.05114 1.24154 0.95172 0.93671 0.96021 1.17719 0.82967 0.90917 0.94130 1.43995 1.74602 1.10993 1.00611 1.19113 1.12478 0.89603 1.19306 0.91252 1.25351 0.95371 0.97746 1.00107 1.69931 1.18700 1.37415 1.26609 0.86367 0.78050 0.84212 0.78032 1.20756 1.21652 1.20839 1.20720 0.92460 0.97685 0.85184 1.22688 1.05600 1.03597 0.88392 1.21815 0.81870 0.76674 0.88506 1.90610 1.29459 1.41382 1.77550 1.44026 1.16998 1.64294 1.06915 1.17876 0.93229 0.93974 0.83701 1.21511 0.97063 1.02172 0.95161 1.21333 0.99113 0.94812 0.93229 1.21018 0.91927 1.03430 1.00567 1.20944 0.98407 0.95937 0.91694 1.15771 0.85422 1.12299 0.94874 1.25650 0.92921 0.93850 0.93885 1.81323 1.11089 1.09095 1.07636 0.79540 0.89372 0.94536 0.93256 0.92476 0.93457 0.88927 0.88227 0.75128 0.82408 0.84952 0.85078 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.77 19.18 29.55 0.57 -6.20 16 2 C -0.09 -2.03 10.00 -37.12 -0.37 -2.40 16 3 C 0.27 6.11 5.45 -6.83 -0.04 6.08 16 4 N -0.58 -13.62 2.48 -176.57 -0.44 -14.06 16 5 C -0.28 -7.05 9.55 -15.06 -0.14 -7.20 16 6 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 7 C 0.02 0.39 5.15 -17.43 -0.09 0.30 16 8 N -0.89 -24.08 9.31 55.49 0.52 -23.56 16 9 Si 0.90 20.78 29.56 -169.99 -5.02 15.76 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.17 3.33 4.98 -4.04 -0.02 3.31 16 14 C -0.16 -2.84 5.87 -27.88 -0.16 -3.00 16 15 C 0.52 8.16 7.63 -10.98 -0.08 8.08 16 16 O -0.52 -8.87 13.12 5.56 0.07 -8.79 16 17 N -0.68 -8.99 5.16 -9.67 -0.05 -9.04 16 18 C 0.21 2.57 6.44 -83.44 -0.54 2.03 16 19 C -0.14 -1.58 8.70 -39.44 -0.34 -1.93 16 20 C -0.07 -0.55 10.03 -39.53 -0.40 -0.95 16 21 C -0.15 -1.07 10.02 -39.62 -0.40 -1.47 16 22 C -0.05 -0.39 9.75 -39.18 -0.38 -0.78 16 23 C -0.08 -0.82 5.75 -106.66 -0.61 -1.43 16 24 C 0.25 3.09 14.25 -22.45 -0.32 2.77 16 25 N -0.42 -5.95 18.54 41.86 0.78 -5.18 16 26 H 0.19 3.55 7.80 -54.08 -0.42 3.12 16 27 H 0.09 2.18 7.07 -51.93 -0.37 1.81 16 28 H 0.04 0.74 7.99 -51.93 -0.42 0.32 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.06 1.14 8.00 -51.93 -0.42 0.73 16 31 H 0.05 0.90 7.92 -51.93 -0.41 0.49 16 32 H 0.09 1.73 7.12 -51.93 -0.37 1.36 16 33 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 34 H 0.41 5.05 7.89 -40.82 -0.32 4.73 16 35 H 0.16 2.05 5.76 -52.49 -0.30 1.75 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -29.79 340.26 -6.61 -36.41 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.26 Total: 6.13 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -3.33 Total: -2.80 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.81 Total: -51.83 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.79 -6.61 -36.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281202940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.110 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds