Wall clock time and date at job start Tue Mar 31 2020 07:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46932 * 229.58628 * 3 2 1 5 5 C 1.36931 * 120.00101 * 262.99130 * 4 3 2 6 6 H 1.08005 * 119.99916 * 213.54875 * 5 4 3 7 7 C 1.38812 * 120.00231 * 33.54821 * 5 4 3 8 8 N 1.31617 * 119.99636 * 5.53269 * 7 5 4 9 9 Si 1.86796 * 120.00095 * 185.52902 * 7 5 4 10 10 H 1.48504 * 109.46969 * 59.99943 * 9 7 5 11 11 H 1.48496 * 109.47033 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47087 * 300.00281 * 9 7 5 13 13 C 1.46504 * 119.99406 * 82.99050 * 4 3 2 14 14 C 1.52995 * 109.47109 * 269.99473 * 13 4 3 15 15 C 1.50710 * 109.47218 * 180.02562 * 14 13 4 16 16 O 1.21276 * 119.99419 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00075 * 180.02562 * 15 14 13 18 18 C 1.39411 * 119.99970 * 185.49940 * 17 15 14 19 19 C 1.38792 * 120.15920 * 24.37619 * 18 17 15 20 20 C 1.38066 * 120.07554 * 179.97438 * 19 18 17 21 21 C 1.38538 * 120.40638 * 0.02562 * 20 19 18 22 22 C 1.37829 * 120.32652 * 359.97438 * 21 20 19 23 23 C 1.39700 * 119.91223 * 359.97438 * 22 21 20 24 24 C 1.43202 * 120.19631 * 180.02562 * 23 22 21 25 25 N 7.33642 * 61.25180 * 273.23188 * 2 1 3 26 26 H 4.40642 * 5.51409 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46650 * 109.59088 * 3 2 1 28 28 H 1.09000 * 109.46895 * 349.59060 * 3 2 1 29 29 H 0.97008 * 119.99479 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46542 * 149.99799 * 13 4 3 31 31 H 1.09000 * 109.47360 * 30.00073 * 13 4 3 32 32 H 1.09004 * 109.47152 * 60.00700 * 14 13 4 33 33 H 1.09000 * 109.47500 * 300.00515 * 14 13 4 34 34 H 0.96996 * 120.00259 * 5.50111 * 17 15 14 35 35 H 1.07999 * 119.96575 * 0.24679 * 19 18 17 36 36 H 1.07998 * 119.80101 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.83340 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.03880 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8963 1.0517 5 6 3.4980 2.1799 0.7434 6 1 4.3055 2.6558 1.2800 7 6 2.8293 2.8693 -0.2588 8 7 1.7767 2.3316 -0.8378 9 14 3.4232 4.5602 -0.7855 10 1 4.8175 4.4611 -1.2871 11 1 2.5444 5.0798 -1.8639 12 1 3.3797 5.4842 0.3762 13 6 3.2323 0.4186 2.4331 14 6 1.9166 0.6953 3.1633 15 6 2.0179 0.2044 4.5846 16 8 3.0419 -0.3150 4.9751 17 7 0.9707 0.3427 5.4215 18 6 1.1015 -0.0054 6.7651 19 6 2.3521 -0.0050 7.3670 20 6 2.4796 -0.3496 8.6979 21 6 1.3642 -0.6981 9.4419 22 6 0.1143 -0.7041 8.8610 23 6 -0.0304 -0.3568 7.5157 24 6 -1.3262 -0.3605 6.9062 25 7 -2.3545 -0.3626 6.4219 26 1 -1.0501 0.0000 -0.0003 27 1 3.0092 0.3454 -0.9682 28 1 3.0098 -1.0099 0.1857 29 1 1.3092 2.8136 -1.5379 30 1 4.0454 0.9383 2.9401 31 1 3.4298 -0.6533 2.4338 32 1 1.1035 0.1756 2.6563 33 1 1.7190 1.7672 3.1626 34 1 0.1260 0.6844 5.0891 35 1 3.2260 0.2694 6.7948 36 1 3.4550 -0.3482 9.1616 37 1 1.4746 -0.9665 10.4821 38 1 -0.7521 -0.9770 9.4453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281202940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:27 Heat of formation + Delta-G solvation = 87.805824 kcal Electronic energy + Delta-G solvation = -22499.884716 eV Core-core repulsion = 19116.537348 eV Total energy + Delta-G solvation = -3383.347368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.84623 -39.78316 -37.95568 -37.51878 -35.95315 -33.88641 -33.36930 -32.28222 -31.78114 -30.27161 -27.88580 -26.29430 -24.85773 -24.07297 -22.49075 -21.30427 -20.12819 -19.27074 -18.55677 -18.39644 -17.88321 -16.88413 -16.73450 -16.17628 -15.97230 -15.61246 -15.29641 -15.22739 -15.12041 -14.79994 -14.44564 -14.19983 -14.02502 -13.86109 -13.41811 -13.18130 -13.14557 -13.00500 -12.71018 -12.65097 -12.44860 -12.24729 -12.15243 -11.81511 -11.65672 -10.95120 -10.79487 -10.56540 -10.27635 -9.93383 -9.16997 -8.76619 -7.81090 -5.44200 -0.25877 0.33439 1.48450 1.49439 1.50212 1.50291 1.56228 1.85664 1.91943 2.37460 2.53878 2.63687 2.79832 2.91882 3.32218 3.54937 3.85265 4.01571 4.12042 4.16392 4.23908 4.31576 4.42767 4.44906 4.50654 4.78030 4.93496 4.96206 5.04971 5.14086 5.26115 5.27660 5.32853 5.42061 5.57186 5.66859 5.69586 5.94872 6.12558 6.37385 6.38342 6.90832 7.12819 7.41057 7.78685 8.28757 9.16465 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.003566 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.952168 B = 7850.176708 C = 8360.266656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.116 4.116 3 C 0.269 3.731 4 N -0.596 5.596 5 C -0.281 4.281 6 H 0.069 0.931 7 C -0.030 4.030 8 N -0.906 5.906 9 Si 0.962 3.038 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.279 1.279 13 C 0.169 3.831 14 C -0.146 4.146 15 C 0.530 3.470 16 O -0.532 6.532 17 N -0.673 5.673 18 C 0.187 3.813 19 C -0.157 4.157 20 C -0.057 4.057 21 C -0.133 4.133 22 C -0.040 4.040 23 C -0.084 4.084 24 C 0.271 3.729 25 N -0.458 5.458 26 H 0.214 0.786 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.248 0.752 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.137 0.863 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 -5.906 20.251 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.119 4.119 3 C 0.144 3.856 4 N -0.316 5.316 5 C -0.411 4.411 6 H 0.086 0.914 7 C -0.228 4.228 8 N -0.548 5.548 9 Si 0.790 3.210 10 H -0.203 1.203 11 H -0.224 1.224 12 H -0.205 1.205 13 C 0.043 3.957 14 C -0.188 4.188 15 C 0.319 3.681 16 O -0.409 6.409 17 N -0.316 5.316 18 C 0.088 3.912 19 C -0.178 4.178 20 C -0.076 4.076 21 C -0.152 4.152 22 C -0.061 4.061 23 C -0.091 4.091 24 C -0.043 4.043 25 N -0.135 5.135 26 H 0.231 0.769 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.252 0.748 35 H 0.155 0.845 36 H 0.176 0.824 37 H 0.189 0.811 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.355 -6.167 19.514 20.510 hybrid contribution -0.504 1.426 -1.026 1.828 sum -1.859 -4.741 18.488 19.176 Atomic orbital electron populations 1.24794 0.96130 1.07036 1.03972 1.24412 0.95783 0.94649 0.97083 1.17661 0.83121 0.91857 0.92940 1.44110 1.74901 1.10519 1.02069 1.19340 1.12260 0.90456 1.19045 0.91373 1.25936 0.95753 1.00566 1.00526 1.70110 1.19704 1.38143 1.26892 0.85452 0.77446 0.80788 0.77282 1.20293 1.22448 1.20498 1.20685 0.93339 0.97905 0.83787 1.22302 1.03854 1.02703 0.89961 1.21171 0.82263 0.76723 0.87894 1.90611 1.30183 1.42389 1.77697 1.43734 1.16240 1.64027 1.07592 1.18021 0.94225 0.96016 0.82944 1.21462 0.96029 1.03650 0.96633 1.21678 1.01039 0.93023 0.91885 1.21468 0.90681 1.00941 1.02070 1.21355 1.00068 0.94199 0.90444 1.15885 0.83981 1.13290 0.95922 1.25889 0.92854 0.92607 0.92911 1.81338 1.12495 1.10791 1.08852 0.76909 0.91906 0.92081 0.94243 0.92842 0.92645 0.89803 0.89529 0.74820 0.84506 0.82354 0.81148 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.19 19.18 74.32 1.43 -11.76 16 2 C -0.12 -5.47 10.00 31.13 0.31 -5.16 16 3 C 0.27 12.50 5.45 84.57 0.46 12.96 16 4 N -0.60 -28.28 2.48 -712.54 -1.76 -30.04 16 5 C -0.28 -14.58 9.55 84.03 0.80 -13.77 16 6 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 7 C -0.03 -1.57 5.15 84.86 0.44 -1.13 16 8 N -0.91 -50.12 9.31 21.65 0.20 -49.92 16 9 Si 0.96 43.24 29.56 68.60 2.03 45.27 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 13 C 0.17 6.83 4.98 86.38 0.43 7.26 16 14 C -0.15 -5.27 5.87 29.85 0.18 -5.10 16 15 C 0.53 16.81 7.63 87.66 0.67 17.48 16 16 O -0.53 -18.46 13.12 -3.02 -0.04 -18.50 16 17 N -0.67 -17.88 5.16 -302.89 -1.56 -19.44 16 18 C 0.19 4.35 6.44 38.57 0.25 4.59 16 19 C -0.16 -3.39 8.70 22.36 0.19 -3.20 16 20 C -0.06 -0.77 10.03 22.30 0.22 -0.54 16 21 C -0.13 -1.27 10.02 22.24 0.22 -1.05 16 22 C -0.04 -0.49 9.75 22.53 0.22 -0.27 16 23 C -0.08 -1.64 5.75 -21.18 -0.12 -1.76 16 24 C 0.27 6.39 14.25 88.33 1.26 7.65 16 25 N -0.46 -12.96 18.54 19.01 0.35 -12.61 16 26 H 0.21 7.82 7.80 -4.41 -0.03 7.79 16 27 H 0.06 3.21 7.07 -2.39 -0.02 3.19 16 28 H 0.06 2.47 7.99 -2.39 -0.02 2.45 16 29 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 30 H 0.05 2.17 8.00 -2.38 -0.02 2.15 16 31 H 0.06 2.12 7.92 -2.39 -0.02 2.10 16 32 H 0.08 3.18 7.12 -2.38 -0.02 3.17 16 33 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.42 10.33 7.89 -92.71 -0.73 9.59 16 35 H 0.14 3.56 5.76 -2.91 -0.02 3.54 16 36 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -65.11 340.26 6.54 -58.58 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.36 Total: 20.47 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 6.96 Total: 6.19 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -2.77 Total: -112.01 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.04 Total: -18.50 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -65.11 6.54 -58.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281202940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.384 kcal (2) G-P(sol) polarization free energy of solvation -65.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds