Wall clock time and date at job start Tue Mar 31 2020 07:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47167 * 2 1 4 4 H 1.08996 * 109.47075 * 55.00292 * 3 2 1 5 5 C 1.53002 * 109.47363 * 295.00220 * 3 2 1 6 6 N 1.46501 * 109.47579 * 175.00036 * 3 2 1 7 7 N 1.40159 * 125.86214 * 59.97503 * 6 3 2 8 8 H 0.97003 * 126.34777 * 0.02562 * 7 6 3 9 9 C 1.37284 * 107.30352 * 180.02562 * 7 6 3 10 10 N 1.33308 * 126.35472 * 180.02562 * 9 7 6 11 11 C 1.32905 * 119.99741 * 179.97438 * 10 9 7 12 12 O 1.21594 * 119.99897 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00227 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.47693 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00498 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99635 * 0.02562 * 15 14 13 17 17 C 1.38802 * 120.00298 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99771 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47299 * 60.00478 * 19 17 15 21 21 H 1.48509 * 109.47076 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47414 * 299.99866 * 19 17 15 23 23 C 1.40979 * 107.28287 * 359.74752 * 9 7 6 24 24 C 1.35121 * 108.24237 * 0.41929 * 23 9 7 25 25 C 1.50703 * 125.55176 * 179.84398 * 24 23 9 26 26 H 1.08996 * 109.46942 * 299.99885 * 1 2 3 27 27 H 1.08994 * 109.46857 * 59.99742 * 1 2 3 28 28 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47429 * 240.00526 * 2 1 3 30 30 H 1.08999 * 109.47320 * 120.00357 * 2 1 3 31 31 H 1.08993 * 109.47143 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46789 * 299.99691 * 5 3 2 33 33 H 1.08998 * 109.47195 * 59.99978 * 5 3 2 34 34 H 1.09001 * 109.47299 * 300.00353 * 13 11 10 35 35 H 1.09003 * 109.47126 * 60.00245 * 13 11 10 36 36 H 0.96995 * 120.00063 * 180.02562 * 18 17 15 37 37 H 1.08007 * 125.87884 * 180.30311 * 23 9 7 38 38 H 1.09002 * 109.47152 * 269.69386 * 25 24 23 39 39 H 1.09001 * 109.46980 * 149.69486 * 25 24 23 40 40 H 1.09004 * 109.47113 * 29.69467 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 7 3.5001 1.4443 0.1204 7 7 4.3986 0.8487 -0.7754 8 1 4.1684 0.3634 -1.5831 9 6 5.6648 1.0793 -0.2976 10 7 6.8060 0.6784 -0.8579 11 6 7.9677 0.9740 -0.2840 12 8 7.9896 1.6104 0.7518 13 6 9.2579 0.5203 -0.9170 14 16 10.6534 1.0741 0.0938 15 6 11.9920 0.4266 -0.8514 16 1 11.7952 -0.1227 -1.7603 17 6 13.2993 0.6225 -0.4281 18 7 13.5390 1.2915 0.6799 19 14 14.7183 -0.0634 -1.4306 20 1 14.6910 0.5247 -2.7940 21 1 16.0030 0.2803 -0.7696 22 1 14.5894 -1.5397 -1.5255 23 6 5.5342 1.8244 0.8920 24 6 4.2182 2.0252 1.1232 25 6 3.6387 2.7748 2.2951 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.9982 3.1543 -1.3071 32 1 2.0699 1.5876 -2.1491 33 1 0.5489 2.1253 -1.3969 34 1 9.2667 -0.5675 -0.9844 35 1 9.3419 0.9470 -1.9165 36 1 14.4525 1.4287 0.9756 37 1 6.3464 2.1730 1.5129 38 1 3.4554 2.0810 3.1155 39 1 2.7001 3.2431 1.9987 40 1 4.3415 3.5427 2.6187 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343151544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:11 Heat of formation + Delta-G solvation = 61.950064 kcal Electronic energy + Delta-G solvation = -21058.135436 eV Core-core repulsion = 17809.110829 eV Total energy + Delta-G solvation = -3249.024607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67118 -38.57424 -36.83260 -33.90069 -32.62552 -32.22994 -31.02503 -29.41866 -28.34772 -27.97609 -25.32457 -24.99307 -22.48953 -21.23297 -20.36663 -19.49674 -17.65132 -17.10851 -16.24927 -15.94892 -15.66970 -15.46496 -14.63162 -14.51210 -14.14389 -14.08456 -13.81294 -13.64849 -13.37173 -13.29258 -13.03074 -12.89580 -12.71364 -12.49361 -12.34791 -12.15589 -11.80540 -11.52351 -11.42474 -10.89111 -10.85000 -10.59292 -10.29459 -9.59688 -9.43720 -9.38702 -8.86992 -8.45057 -7.94102 -7.41083 -6.24532 -6.02304 -3.69449 1.07897 1.17690 2.59898 3.28623 3.36732 3.37050 3.40904 3.74049 3.92863 4.07746 4.17339 4.28249 4.32583 4.41370 4.57104 4.64902 4.71931 4.83770 4.92429 5.01007 5.09870 5.11101 5.23866 5.31990 5.33456 5.37845 5.45108 5.54543 5.58089 5.61378 5.77612 6.17905 6.36889 6.42119 6.66574 6.82650 7.11482 7.48816 7.79190 8.10012 8.55740 9.32318 9.42684 11.05290 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.040425 B = 0.002616 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.473071 B =10700.955777 C =11129.970721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.159 3.841 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.387 5.387 7 N -0.481 5.481 8 H 0.444 0.556 9 C 0.482 3.518 10 N -0.675 5.675 11 C 0.517 3.483 12 O -0.543 6.543 13 C -0.121 4.121 14 S -0.078 6.078 15 C -0.527 4.527 16 H 0.071 0.929 17 C 0.071 3.929 18 N -0.871 5.871 19 Si 0.917 3.083 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.275 1.275 23 C -0.294 4.294 24 C 0.164 3.836 25 C -0.097 4.097 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.266 0.734 37 H 0.193 0.807 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.885 1.088 -0.250 32.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C 0.058 3.942 4 H 0.134 0.866 5 C -0.230 4.230 6 N -0.180 5.180 7 N -0.208 5.208 8 H 0.291 0.709 9 C 0.227 3.773 10 N -0.434 5.434 11 C 0.303 3.697 12 O -0.421 6.421 13 C -0.272 4.272 14 S 0.149 5.851 15 C -0.676 4.676 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.506 5.506 19 Si 0.743 3.257 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.325 4.325 24 C 0.047 3.953 25 C -0.155 4.155 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.209 0.791 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -32.818 1.601 0.574 32.862 hybrid contribution 0.807 -1.215 -1.883 2.381 sum -32.011 0.386 -1.308 32.040 Atomic orbital electron populations 1.21790 0.93921 1.02807 1.02397 1.22008 0.97188 0.95113 1.03687 1.21583 0.73521 0.98107 1.00953 0.86584 1.22312 1.02835 1.01606 0.96292 1.46586 1.01790 1.51312 1.18267 1.44110 0.99888 1.54285 1.22548 0.70886 1.19346 0.84720 0.85652 0.87598 1.68942 0.95682 1.39464 1.39298 1.20585 0.88163 0.77800 0.83115 1.90521 1.89238 1.37636 1.24687 1.23143 0.96091 1.04053 1.03867 1.85164 0.93862 1.72853 1.33204 1.22858 0.92498 1.40384 1.11839 0.91109 1.24978 0.98183 0.95196 0.95386 1.70030 1.20744 1.38585 1.21288 0.86254 0.80262 0.79319 0.79817 1.20032 1.20958 1.20027 1.22684 0.95847 1.11463 1.02525 1.21276 0.91922 0.92983 0.89122 1.20672 1.01744 0.99977 0.93139 0.92120 0.91983 0.91787 0.91243 0.90621 0.91266 0.91847 0.89914 0.89631 0.89632 0.92415 0.79066 0.89219 0.90860 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.35 9.67 37.16 0.36 0.01 16 2 C -0.14 -0.55 5.66 -26.73 -0.15 -0.70 16 3 C 0.16 0.67 3.11 -67.93 -0.21 0.46 16 4 H 0.12 0.27 6.63 -51.93 -0.34 -0.08 16 5 C -0.17 -0.62 9.20 37.16 0.34 -0.28 16 6 N -0.39 -3.18 3.32 -50.41 -0.17 -3.35 16 7 N -0.48 -5.26 7.22 31.32 0.23 -5.03 16 8 H 0.44 3.82 8.96 -182.55 -1.64 2.18 16 9 C 0.48 7.87 8.07 -155.18 -1.25 6.62 16 10 N -0.68 -13.72 10.51 -11.59 -0.12 -13.84 16 11 C 0.52 12.32 7.73 -11.82 -0.09 12.23 16 12 O -0.54 -13.76 12.77 5.28 0.07 -13.69 16 13 C -0.12 -3.04 6.23 36.00 0.22 -2.82 16 14 S -0.08 -2.34 20.57 -107.50 -2.21 -4.55 16 15 C -0.53 -16.37 9.50 30.94 0.29 -16.08 16 16 H 0.07 2.10 7.80 -52.49 -0.41 1.69 16 17 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 18 N -0.87 -27.74 13.22 55.49 0.73 -27.00 16 19 Si 0.92 22.82 29.55 -169.99 -5.02 17.79 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 23 C -0.29 -4.46 9.40 -39.65 -0.37 -4.83 16 24 C 0.16 1.62 6.93 -81.70 -0.57 1.05 16 25 C -0.10 -0.53 9.92 36.01 0.36 -0.17 16 26 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 27 H 0.06 0.11 6.56 -51.93 -0.34 -0.23 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.15 6.57 -51.93 -0.34 -0.19 16 34 H 0.09 2.08 8.14 -51.92 -0.42 1.65 16 35 H 0.09 2.08 8.14 -51.91 -0.42 1.65 16 36 H 0.27 7.87 8.31 -40.82 -0.34 7.53 16 37 H 0.19 3.46 5.77 -52.48 -0.30 3.16 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.21 7.06 -51.93 -0.37 -0.15 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -40.06 348.47 -9.51 -49.57 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.10 Total: -2.72 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.16 Total: -2.42 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.67 Total: -49.22 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.07 Total: -13.69 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -2.21 Total: -4.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -40.06 -9.51 -49.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343151544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.521 kcal (2) G-P(sol) polarization free energy of solvation -40.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds