Wall clock time and date at job start Tue Mar 31 2020 07:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47167 * 2 1 4 4 H 1.08996 * 109.47075 * 55.00292 * 3 2 1 5 5 C 1.53002 * 109.47363 * 295.00220 * 3 2 1 6 6 N 1.46501 * 109.47579 * 175.00036 * 3 2 1 7 7 N 1.40159 * 125.86214 * 59.97503 * 6 3 2 8 8 H 0.97003 * 126.34777 * 0.02562 * 7 6 3 9 9 C 1.37284 * 107.30352 * 180.02562 * 7 6 3 10 10 N 1.33308 * 126.35472 * 180.02562 * 9 7 6 11 11 C 1.32905 * 119.99741 * 179.97438 * 10 9 7 12 12 O 1.21594 * 119.99897 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00227 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.47693 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00498 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99635 * 0.02562 * 15 14 13 17 17 C 1.38802 * 120.00298 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99771 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47299 * 60.00478 * 19 17 15 21 21 H 1.48509 * 109.47076 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47414 * 299.99866 * 19 17 15 23 23 C 1.40979 * 107.28287 * 359.74752 * 9 7 6 24 24 C 1.35121 * 108.24237 * 0.41929 * 23 9 7 25 25 C 1.50703 * 125.55176 * 179.84398 * 24 23 9 26 26 H 1.08996 * 109.46942 * 299.99885 * 1 2 3 27 27 H 1.08994 * 109.46857 * 59.99742 * 1 2 3 28 28 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47429 * 240.00526 * 2 1 3 30 30 H 1.08999 * 109.47320 * 120.00357 * 2 1 3 31 31 H 1.08993 * 109.47143 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46789 * 299.99691 * 5 3 2 33 33 H 1.08998 * 109.47195 * 59.99978 * 5 3 2 34 34 H 1.09001 * 109.47299 * 300.00353 * 13 11 10 35 35 H 1.09003 * 109.47126 * 60.00245 * 13 11 10 36 36 H 0.96995 * 120.00063 * 180.02562 * 18 17 15 37 37 H 1.08007 * 125.87884 * 180.30311 * 23 9 7 38 38 H 1.09002 * 109.47152 * 269.69386 * 25 24 23 39 39 H 1.09001 * 109.46980 * 149.69486 * 25 24 23 40 40 H 1.09004 * 109.47113 * 29.69467 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 7 3.5001 1.4443 0.1204 7 7 4.3986 0.8487 -0.7754 8 1 4.1684 0.3634 -1.5831 9 6 5.6648 1.0793 -0.2976 10 7 6.8060 0.6784 -0.8579 11 6 7.9677 0.9740 -0.2840 12 8 7.9896 1.6104 0.7518 13 6 9.2579 0.5203 -0.9170 14 16 10.6534 1.0741 0.0938 15 6 11.9920 0.4266 -0.8514 16 1 11.7952 -0.1227 -1.7603 17 6 13.2993 0.6225 -0.4281 18 7 13.5390 1.2915 0.6799 19 14 14.7183 -0.0634 -1.4306 20 1 14.6910 0.5247 -2.7940 21 1 16.0030 0.2803 -0.7696 22 1 14.5894 -1.5397 -1.5255 23 6 5.5342 1.8244 0.8920 24 6 4.2182 2.0252 1.1232 25 6 3.6387 2.7748 2.2951 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.9982 3.1543 -1.3071 32 1 2.0699 1.5876 -2.1491 33 1 0.5489 2.1253 -1.3969 34 1 9.2667 -0.5675 -0.9844 35 1 9.3419 0.9470 -1.9165 36 1 14.4525 1.4287 0.9756 37 1 6.3464 2.1730 1.5129 38 1 3.4554 2.0810 3.1155 39 1 2.7001 3.2431 1.9987 40 1 4.3415 3.5427 2.6187 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343151544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:11 Heat of formation + Delta-G solvation = 32.406573 kcal Electronic energy + Delta-G solvation = -21059.416537 eV Core-core repulsion = 17809.110829 eV Total energy + Delta-G solvation = -3250.305709 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.70492 -40.09718 -37.45792 -34.95003 -34.57164 -33.69327 -31.93706 -30.71603 -29.19248 -28.90915 -27.65142 -25.48504 -23.65391 -21.93732 -21.20849 -20.87657 -19.54143 -18.45990 -17.41893 -16.91665 -16.86906 -16.76327 -15.98011 -15.96540 -15.85811 -15.37550 -14.70050 -14.57573 -14.41693 -14.31497 -13.95256 -13.79661 -13.47071 -13.28627 -13.17093 -13.09157 -12.85639 -12.77972 -12.65220 -12.57640 -12.10544 -11.77858 -11.70569 -11.28740 -11.11619 -10.93468 -10.46782 -10.29298 -10.00744 -8.72207 -8.57869 -8.32348 -6.10603 -0.04482 0.26969 1.30875 1.32451 1.44501 1.49005 1.65504 2.30285 2.40733 2.73130 3.00042 3.25375 3.43110 3.51817 3.62763 3.71146 3.93617 4.06067 4.25127 4.37332 4.42827 4.43196 4.56996 4.62610 4.66189 4.72492 4.76239 4.87037 4.93318 5.00630 5.07550 5.09808 5.20412 5.23135 5.41818 5.41887 5.77114 5.99659 6.21662 6.33948 6.64398 7.06995 7.74711 8.77288 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.040425 B = 0.002616 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.473071 B =10700.955777 C =11129.970721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.148 3.852 4 H 0.154 0.846 5 C -0.172 4.172 6 N -0.356 5.356 7 N -0.460 5.460 8 H 0.456 0.544 9 C 0.460 3.540 10 N -0.703 5.703 11 C 0.507 3.493 12 O -0.582 6.582 13 C -0.097 4.097 14 S -0.151 6.151 15 C -0.550 4.550 16 H 0.075 0.925 17 C 0.012 3.988 18 N -0.910 5.910 19 Si 1.003 2.997 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.263 1.263 23 C -0.352 4.352 24 C 0.211 3.789 25 C -0.100 4.100 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.272 0.728 37 H 0.156 0.844 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.633 1.013 -0.837 36.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.051 3.949 4 H 0.172 0.828 5 C -0.230 4.230 6 N -0.145 5.145 7 N -0.185 5.185 8 H 0.306 0.694 9 C 0.209 3.791 10 N -0.466 5.466 11 C 0.293 3.707 12 O -0.464 6.464 13 C -0.248 4.248 14 S 0.076 5.924 15 C -0.698 4.698 16 H 0.093 0.907 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.824 3.176 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.187 1.187 23 C -0.383 4.383 24 C 0.088 3.912 25 C -0.157 4.157 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.174 0.826 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -36.733 1.500 -0.068 36.763 hybrid contribution 1.438 -1.135 -1.633 2.455 sum -35.294 0.364 -1.701 35.337 Atomic orbital electron populations 1.21781 0.92119 1.03075 1.03591 1.21985 0.98628 0.94200 1.02963 1.22262 0.70105 0.99355 1.03222 0.82841 1.22342 1.04638 1.00894 0.95111 1.47430 1.03094 1.47770 1.16238 1.44129 0.99061 1.52616 1.22716 0.69351 1.19362 0.85232 0.86123 0.88409 1.68698 0.95776 1.42085 1.40045 1.20361 0.88898 0.78370 0.83104 1.90512 1.89520 1.40178 1.26192 1.22952 0.95137 1.03906 1.02774 1.85238 0.97094 1.73999 1.36072 1.23166 0.93153 1.41241 1.12224 0.90684 1.26185 1.01332 0.95057 0.96629 1.70188 1.21857 1.39516 1.23095 0.84956 0.75765 0.78861 0.78050 1.18744 1.19661 1.18736 1.22249 0.97630 1.15107 1.03343 1.21868 0.90279 0.89827 0.89267 1.20985 1.03231 1.00032 0.91480 0.90743 0.90955 0.92125 0.91962 0.91558 0.91722 0.92653 0.87130 0.89379 0.89377 0.91881 0.82627 0.86884 0.86699 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.04 9.67 71.98 0.70 0.66 16 2 C -0.14 -0.55 5.66 30.59 0.17 -0.37 16 3 C 0.15 0.55 3.11 44.99 0.14 0.69 16 4 H 0.15 -0.36 6.63 -2.39 -0.02 -0.38 16 5 C -0.17 -0.47 9.20 71.98 0.66 0.19 16 6 N -0.36 -4.79 3.32 -313.41 -1.04 -5.83 16 7 N -0.46 -9.57 7.22 -54.81 -0.40 -9.96 16 8 H 0.46 7.25 8.96 -213.28 -1.91 5.33 16 9 C 0.46 15.59 8.07 133.82 1.08 16.67 16 10 N -0.70 -30.33 10.51 -309.89 -3.26 -33.59 16 11 C 0.51 26.07 7.73 87.94 0.68 26.75 16 12 O -0.58 -32.25 12.77 -4.01 -0.05 -32.30 16 13 C -0.10 -5.19 6.23 71.23 0.44 -4.74 16 14 S -0.15 -9.68 20.57 -56.49 -1.16 -10.85 16 15 C -0.55 -35.38 9.50 67.96 0.65 -34.74 16 16 H 0.07 4.59 7.80 -2.91 -0.02 4.57 16 17 C 0.01 0.77 5.49 84.86 0.47 1.24 16 18 N -0.91 -59.66 13.22 21.65 0.29 -59.37 16 19 Si 1.00 47.32 29.55 68.60 2.03 49.35 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 23 C -0.35 -11.12 9.40 22.22 0.21 -10.91 16 24 C 0.21 3.71 6.93 41.14 0.29 4.00 16 25 C -0.10 -0.67 9.92 71.24 0.71 0.03 16 26 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.07 -0.10 6.56 -2.39 -0.02 -0.12 16 28 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.11 -0.21 6.57 -2.39 -0.02 -0.22 16 34 H 0.09 4.55 8.14 -2.39 -0.02 4.53 16 35 H 0.09 4.55 8.14 -2.39 -0.02 4.53 16 36 H 0.27 16.41 8.31 -92.71 -0.77 15.64 16 37 H 0.16 6.21 5.77 -2.91 -0.02 6.20 16 38 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.11 -0.09 7.06 -2.39 -0.02 -0.11 16 40 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -96.05 348.47 1.74 -94.32 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -0.86 Total: 8.76 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 6.19 Total: -0.52 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -4.41 Total: -108.76 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.30 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Atomic # 16 Polarization: -9.68 SS G_CDS: -1.16 Total: -10.85 kcal Total: -96.05 1.74 -94.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343151544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.724 kcal (2) G-P(sol) polarization free energy of solvation -96.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds