Wall clock time and date at job start Tue Mar 31 2020 07:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 H 1.09000 * 109.47038 * 55.00203 * 3 2 1 5 5 C 1.50708 * 109.46812 * 175.00090 * 3 2 1 6 6 H 1.08000 * 119.99748 * 120.00274 * 5 3 2 7 7 C 1.37875 * 120.00024 * 299.99884 * 5 3 2 8 8 N 1.31517 * 119.99832 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00227 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47023 * 89.99563 * 9 7 5 11 11 H 1.48494 * 109.47438 * 210.00295 * 9 7 5 12 12 H 1.48505 * 109.46984 * 330.00076 * 9 7 5 13 13 N 1.46893 * 109.47282 * 294.99869 * 3 2 1 14 14 C 1.48531 * 111.00133 * 292.39805 * 13 3 2 15 15 C 1.54937 * 103.22764 * 200.27944 * 14 13 3 16 16 O 1.42903 * 110.72448 * 279.05166 * 15 14 13 17 17 C 1.53006 * 110.87907 * 155.84521 * 15 14 13 18 18 F 1.39903 * 109.47079 * 183.95752 * 17 15 14 19 19 F 1.39899 * 109.46824 * 303.95548 * 17 15 14 20 20 F 1.39896 * 109.47138 * 63.95576 * 17 15 14 21 21 C 1.54590 * 102.92320 * 37.41175 * 15 14 13 22 22 C 1.47902 * 111.00212 * 175.00196 * 13 3 2 23 23 H 1.09001 * 109.91651 * 26.49024 * 22 13 3 24 24 C 1.53005 * 110.07908 * 265.29264 * 22 13 3 25 25 O 1.42903 * 109.46691 * 295.85163 * 24 22 13 26 26 H 1.08996 * 109.46797 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47171 * 300.00009 * 1 2 3 28 28 H 1.09003 * 109.46855 * 60.00198 * 1 2 3 29 29 H 1.09003 * 109.47052 * 240.00183 * 2 1 3 30 30 H 1.09001 * 109.47522 * 120.00453 * 2 1 3 31 31 H 0.97003 * 119.99565 * 179.97438 * 8 7 5 32 32 H 1.09001 * 110.67180 * 81.84383 * 14 13 3 33 33 H 1.08998 * 110.67095 * 318.71273 * 14 13 3 34 34 H 0.96700 * 114.00311 * 293.50461 * 16 15 14 35 35 H 1.09004 * 110.31106 * 96.96159 * 21 15 14 36 36 H 1.09001 * 110.31409 * 219.02556 * 21 15 14 37 37 H 1.08997 * 109.47194 * 55.85306 * 24 22 13 38 38 H 1.08995 * 109.46975 * 175.85703 * 24 22 13 39 39 H 0.96703 * 113.99831 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8812 1.3818 10 1 6.4417 2.1142 2.0849 11 1 6.4396 -0.3098 2.1548 12 1 6.6136 0.8416 0.0278 13 7 1.6514 2.0993 -1.2552 14 6 2.3699 1.5052 -2.4114 15 6 2.2641 2.6049 -3.4977 16 8 0.9922 2.5534 -4.1472 17 6 3.3965 2.4741 -4.5182 18 9 3.3259 3.5318 -5.4313 19 9 4.6280 2.5114 -3.8556 20 9 3.2710 1.2595 -5.2010 21 6 2.4099 3.9106 -2.6831 22 6 2.0234 3.5307 -1.2417 23 1 2.8721 3.6876 -0.5760 24 6 0.8357 4.3777 -0.7800 25 8 -0.2284 4.2619 -1.7267 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8293 -0.0609 2.9499 32 1 1.8779 0.5901 -2.7412 33 1 3.4127 1.3129 -2.1590 34 1 0.8505 1.7535 -4.6718 35 1 3.4401 4.2651 -2.7175 36 1 1.7347 4.6746 -3.0686 37 1 0.4954 4.0261 0.1940 38 1 1.1416 5.4210 -0.7031 39 1 -1.0162 4.7738 -1.4975 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:24 Heat of formation + Delta-G solvation = -242.784747 kcal Electronic energy + Delta-G solvation = -27115.730742 eV Core-core repulsion = 22836.589480 eV Total energy + Delta-G solvation = -4279.141262 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.94750 -47.47314 -47.41001 -39.36067 -36.38945 -35.76552 -33.53204 -31.69195 -29.97528 -29.46070 -26.54775 -25.54541 -24.36499 -22.81897 -21.08494 -19.74605 -19.39950 -18.39735 -18.12506 -17.93349 -16.89397 -16.50101 -15.99846 -14.86421 -14.67633 -14.29358 -14.25466 -14.07340 -13.88651 -13.84408 -13.62266 -13.56148 -13.31758 -13.13051 -12.89964 -12.73419 -12.50770 -12.07856 -11.62739 -11.37920 -11.22597 -11.06493 -10.90968 -10.78717 -10.64580 -10.29221 -10.08087 -9.81232 -9.71091 -9.58165 -9.42711 -9.13024 -8.44480 -7.31305 -6.08353 -4.22791 2.84723 3.21381 3.29666 3.33133 3.86495 3.92701 4.10896 4.32362 4.52950 4.77483 4.84268 5.06899 5.15498 5.17938 5.52752 5.66761 5.83517 6.00565 6.17494 6.21574 6.27922 6.34614 6.43719 6.46873 6.62288 6.67267 6.98093 7.15359 7.22529 7.48791 7.61664 7.67188 7.81798 8.02433 8.06814 8.19630 8.32595 8.86811 9.45544 10.90807 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.007453 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.292281 B = 3756.188717 C = 4634.037075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.203 3.797 4 H 0.042 0.958 5 C -0.552 4.552 6 H 0.059 0.941 7 C 0.073 3.927 8 N -0.881 5.881 9 Si 0.885 3.115 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.483 5.483 14 C 0.023 3.977 15 C 0.093 3.907 16 O -0.505 6.505 17 C 0.424 3.576 18 F -0.183 7.183 19 F -0.175 7.175 20 F -0.187 7.187 21 C -0.104 4.104 22 C 0.071 3.929 23 H 0.085 0.915 24 C 0.095 3.905 25 O -0.548 6.548 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.030 0.970 30 H 0.092 0.908 31 H 0.262 0.738 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.374 0.626 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 5.375 -9.007 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C 0.097 3.903 4 H 0.060 0.940 5 C -0.591 4.591 6 H 0.077 0.923 7 C -0.131 4.131 8 N -0.518 5.518 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.207 5.207 14 C -0.105 4.105 15 C 0.049 3.951 16 O -0.309 6.309 17 C 0.369 3.631 18 F -0.164 7.164 19 F -0.157 7.157 20 F -0.168 7.168 21 C -0.142 4.142 22 C -0.038 4.038 23 H 0.103 0.897 24 C 0.016 3.984 25 O -0.350 6.350 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.222 0.778 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.651 5.382 -8.873 11.001 hybrid contribution 1.975 -0.237 0.110 1.992 sum -1.676 5.145 -8.764 10.299 Atomic orbital electron populations 1.21708 0.98655 0.98434 1.00792 1.21542 0.92418 0.98794 1.01896 1.19497 0.93170 0.91641 0.86005 0.94026 1.21713 0.92644 1.38971 1.05771 0.92254 1.24886 0.97855 0.94744 0.95580 1.69874 1.34916 1.37720 1.09309 0.86706 0.86078 0.77668 0.78308 1.20621 1.21118 1.19832 1.65092 1.51831 0.99786 1.04011 1.23760 1.01069 0.95195 0.90490 1.23335 0.80920 1.01604 0.89234 1.86776 1.31180 1.45546 1.67424 1.21735 0.85322 0.73444 0.82562 1.93165 1.96460 1.57417 1.69384 1.93195 1.46089 1.96054 1.80350 1.93148 1.95955 1.45908 1.81802 1.22387 1.02000 0.94831 0.94937 1.22350 0.95677 0.91288 0.94514 0.89679 1.22088 0.88129 0.96274 0.91872 1.86715 1.26003 1.73241 1.49056 0.95656 0.94332 0.93002 0.95148 0.88942 0.92756 0.90025 0.90031 0.77824 0.90455 0.88663 0.93539 0.94710 0.79489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.16 0.36 -2.41 16 2 C -0.11 -2.47 5.22 -26.73 -0.14 -2.61 16 3 C 0.20 4.70 1.72 -68.86 -0.12 4.59 16 4 H 0.04 1.07 8.13 -51.93 -0.42 0.65 16 5 C -0.55 -13.81 6.43 -34.44 -0.22 -14.03 16 6 H 0.06 1.49 5.99 -52.49 -0.31 1.17 16 7 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -23.67 11.29 55.43 0.63 -23.04 16 9 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.48 -9.66 4.31 -216.05 -0.93 -10.59 16 14 C 0.02 0.44 4.47 -1.90 -0.01 0.43 16 15 C 0.09 1.53 0.84 -88.76 -0.07 1.46 16 16 O -0.51 -7.95 13.09 -35.23 -0.46 -8.41 16 17 C 0.42 6.72 2.43 37.16 0.09 6.81 16 18 F -0.18 -2.84 17.11 2.25 0.04 -2.80 16 19 F -0.18 -3.00 15.79 2.25 0.04 -2.97 16 20 F -0.19 -2.83 16.80 2.25 0.04 -2.79 16 21 C -0.10 -1.71 5.38 -25.38 -0.14 -1.84 16 22 C 0.07 1.29 2.56 -66.64 -0.17 1.12 16 23 H 0.09 1.69 6.66 -51.93 -0.35 1.34 16 24 C 0.09 1.51 6.81 37.16 0.25 1.76 16 25 O -0.55 -8.53 12.67 -35.23 -0.45 -8.97 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.03 7.75 -51.93 -0.40 0.62 16 29 H 0.03 0.68 6.95 -51.93 -0.36 0.32 16 30 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.08 1.49 7.60 -51.93 -0.39 1.10 16 33 H 0.08 1.71 4.97 -51.93 -0.26 1.45 16 34 H 0.37 4.57 8.72 45.56 0.40 4.96 16 35 H 0.08 1.20 7.32 -51.93 -0.38 0.82 16 36 H 0.09 1.54 7.12 -51.93 -0.37 1.17 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.36 3.92 9.12 45.56 0.42 4.33 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -28.12 320.04 -5.13 -33.24 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.57 Total: 9.11 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.26 Total: -2.94 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.30 Total: -33.64 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.91 Total: -17.38 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 0.11 Total: -8.56 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.12 -5.13 -33.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.544 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds