Wall clock time and date at job start Tue Mar 31 2020 07:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47134 * 2 1 4 4 C 1.34778 * 120.00318 * 94.58046 * 3 2 1 5 5 C 1.50708 * 119.99560 * 354.18597 * 4 3 2 6 6 O 1.21275 * 120.00265 * 174.18626 * 4 3 2 7 7 C 1.39004 * 120.00041 * 274.30354 * 3 2 1 8 8 N 1.29625 * 124.94382 * 185.01674 * 7 3 2 9 9 C 1.31991 * 116.91449 * 179.77618 * 8 7 3 10 10 C 1.50694 * 122.71655 * 180.25079 * 9 8 7 11 11 N 1.46905 * 109.46795 * 275.28723 * 10 9 8 12 12 C 1.46902 * 110.99786 * 293.95032 * 11 10 9 13 13 C 1.46904 * 110.99843 * 170.00086 * 11 10 9 14 14 C 1.50710 * 109.46942 * 189.99955 * 13 11 10 15 15 H 1.08007 * 119.99768 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00129 * 179.97438 * 14 13 11 17 17 N 1.31506 * 119.99643 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99691 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46674 * 89.99988 * 18 16 14 20 20 H 1.48500 * 109.46742 * 209.99818 * 18 16 14 21 21 H 1.48500 * 109.47336 * 330.00174 * 18 16 14 22 22 C 1.33448 * 114.57086 * 0.51235 * 9 8 7 23 23 S 1.70968 * 124.94256 * 5.32108 * 7 3 2 24 24 H 1.08991 * 109.47384 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46645 * 299.99783 * 1 2 3 26 26 H 1.08998 * 109.47170 * 59.99916 * 1 2 3 27 27 H 1.08999 * 109.46941 * 240.00222 * 2 1 3 28 28 H 1.08998 * 109.47170 * 120.00084 * 2 1 3 29 29 H 1.09003 * 109.46950 * 354.72916 * 5 4 3 30 30 H 1.08995 * 109.46943 * 114.73297 * 5 4 3 31 31 H 1.09000 * 109.46915 * 234.73061 * 5 4 3 32 32 H 1.09003 * 109.47530 * 35.28135 * 10 9 8 33 33 H 1.08993 * 109.47571 * 155.28971 * 10 9 8 34 34 H 1.08998 * 109.47023 * 60.00023 * 12 11 10 35 35 H 1.08998 * 109.46849 * 179.97438 * 12 11 10 36 36 H 1.08995 * 109.46902 * 299.99955 * 12 11 10 37 37 H 1.09000 * 109.47003 * 309.99211 * 13 11 10 38 38 H 1.08991 * 109.47289 * 70.00236 * 13 11 10 39 39 H 0.97006 * 119.99105 * 180.02562 * 17 16 14 40 40 H 1.08000 * 125.97148 * 179.73254 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3309 1.9855 1.1634 5 6 2.0554 1.2898 2.4716 6 8 2.8338 3.0891 1.1576 7 6 2.1649 2.0666 -1.2004 8 7 2.6735 3.2528 -1.3208 9 6 2.7408 3.7531 -2.5404 10 6 3.3124 5.1167 -2.8309 11 7 2.2707 6.1350 -2.6409 12 6 1.2005 5.9853 -3.6361 13 6 2.8427 7.4874 -2.6823 14 6 1.8029 8.4863 -2.2435 15 1 0.8160 8.1499 -1.9617 16 6 2.1118 9.8293 -2.2008 17 7 1.2043 10.7008 -1.8185 18 14 3.8194 10.4108 -2.6862 19 1 3.8470 10.7046 -4.1416 20 1 4.1580 11.6409 -1.9263 21 1 4.8105 9.3491 -2.3767 22 6 2.2566 2.9558 -3.4947 23 16 1.6937 1.4707 -2.7321 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5212 0.3587 2.2825 30 1 2.9984 1.0723 2.9731 31 1 1.4474 1.9353 3.1054 32 1 4.1422 5.3150 -2.1525 33 1 3.6689 5.1495 -3.8604 34 1 0.7474 4.9990 -3.5368 35 1 0.4424 6.7512 -3.4723 36 1 1.6176 6.0946 -4.6372 37 1 3.7015 7.5393 -2.0130 38 1 3.1602 7.7167 -3.6994 39 1 1.4216 11.6458 -1.7888 40 1 2.2167 3.1815 -4.5501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:15 Heat of formation + Delta-G solvation = 41.703447 kcal Electronic energy + Delta-G solvation = -21885.465296 eV Core-core repulsion = 18635.562730 eV Total energy + Delta-G solvation = -3249.902566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.72006 -39.17068 -36.65353 -36.13753 -32.52774 -31.63827 -30.48749 -29.37768 -27.69750 -27.12173 -24.72458 -23.97663 -23.42476 -20.66427 -19.96148 -19.13793 -18.00443 -16.91702 -16.68660 -16.42736 -15.99868 -14.97887 -14.63651 -14.49976 -14.24493 -14.06419 -13.95324 -13.79336 -13.29455 -13.16459 -12.85278 -12.55992 -12.31968 -12.22748 -12.12091 -11.90899 -11.65602 -11.34721 -11.10672 -10.88500 -10.60545 -10.32990 -10.25940 -10.12579 -9.76350 -9.23201 -9.14226 -9.10512 -8.50200 -8.07847 -7.29147 -5.97461 -3.94038 0.85183 1.08252 1.74031 2.45337 2.47809 3.15847 3.34135 3.41785 3.45400 4.12819 4.34169 4.49343 4.61225 4.65558 4.73929 4.95833 5.04037 5.14114 5.20024 5.28983 5.34346 5.37996 5.50895 5.58719 5.76018 5.83899 5.94697 6.07430 6.18144 6.27515 6.39512 6.75800 6.87153 6.90037 7.06162 7.67219 7.88916 7.96411 8.08946 8.17431 8.73889 9.11631 9.64213 11.15892 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.003864 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.545240 B = 7244.592009 C = 7915.619231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.096 3.904 3 N -0.530 5.530 4 C 0.500 3.500 5 C -0.171 4.171 6 O -0.462 6.462 7 C 0.271 3.729 8 N -0.452 5.452 9 C 0.125 3.875 10 C 0.122 3.878 11 N -0.521 5.521 12 C 0.035 3.965 13 C 0.164 3.836 14 C -0.505 4.505 15 H 0.080 0.920 16 C 0.068 3.932 17 N -0.902 5.902 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.266 1.266 22 C -0.277 4.277 23 S 0.092 5.908 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.012 0.988 37 H 0.031 0.969 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 -27.974 1.569 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.026 4.026 3 N -0.262 5.262 4 C 0.285 3.715 5 C -0.231 4.231 6 O -0.329 6.329 7 C -0.097 4.097 8 N -0.172 5.172 9 C -0.007 4.007 10 C -0.009 4.009 11 N -0.245 5.245 12 C -0.114 4.114 13 C 0.038 3.962 14 C -0.544 4.544 15 H 0.098 0.902 16 C -0.133 4.133 17 N -0.541 5.541 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.417 4.417 23 S 0.342 5.658 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.049 0.951 38 H 0.003 0.997 39 H 0.073 0.927 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.124 -27.875 2.307 27.970 hybrid contribution 1.407 1.295 -1.246 2.282 sum 1.531 -26.580 1.061 26.645 Atomic orbital electron populations 1.22286 0.94439 1.03212 1.03745 1.21946 0.95789 0.80156 1.04731 1.45454 1.63892 1.14084 1.02819 1.21206 0.78612 0.86761 0.84912 1.22029 1.04943 1.02000 0.94095 1.90930 1.37371 1.18606 1.86020 1.23713 1.01203 0.93265 0.91523 1.66352 1.18786 1.08033 1.24061 1.20126 0.97743 0.97446 0.85390 1.20645 0.94892 0.86093 0.99248 1.61857 1.09990 1.03691 1.48944 1.22301 0.96014 1.01186 0.91858 1.20212 0.96426 0.84968 0.94632 1.21028 0.99466 0.89816 1.44070 0.90170 1.24883 0.96799 0.96632 0.95023 1.69898 1.33813 1.02061 1.48335 0.86858 0.85661 0.78586 0.78652 1.20390 1.21148 1.19077 1.26599 1.13390 0.96917 1.04796 1.83515 1.62156 1.20765 0.99373 0.90396 0.91501 0.91547 0.89575 0.87896 0.89949 0.88342 0.88089 0.89457 0.93909 0.93463 0.90109 0.96994 0.95135 0.99737 0.92735 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 10.11 37.16 0.38 -0.63 16 2 C 0.10 0.61 5.29 -4.04 -0.02 0.59 16 3 N -0.53 -6.35 2.68 -117.39 -0.31 -6.66 16 4 C 0.50 6.73 7.73 -10.98 -0.08 6.64 16 5 C -0.17 -1.25 9.89 36.01 0.36 -0.89 16 6 O -0.46 -9.10 15.75 5.56 0.09 -9.01 16 7 C 0.27 4.11 7.65 -87.34 -0.67 3.44 16 8 N -0.45 -8.76 8.65 -11.28 -0.10 -8.86 16 9 C 0.13 2.25 5.57 -84.20 -0.47 1.78 16 10 C 0.12 2.39 5.41 -4.98 -0.03 2.37 16 11 N -0.52 -12.10 4.74 -245.82 -1.17 -13.27 16 12 C 0.03 0.72 9.07 60.07 0.54 1.27 16 13 C 0.16 4.25 3.79 -4.97 -0.02 4.23 16 14 C -0.51 -15.17 9.01 -34.43 -0.31 -15.48 16 15 H 0.08 2.63 7.37 -52.48 -0.39 2.24 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -28.62 13.96 55.43 0.77 -27.84 16 18 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 21 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 22 C -0.28 -3.96 9.86 29.06 0.29 -3.68 16 23 S 0.09 1.08 21.52 -107.50 -2.31 -1.24 16 24 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.07 0.39 8.00 -51.92 -0.42 -0.02 16 26 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 27 H 0.09 0.47 7.36 -51.93 -0.38 0.09 16 28 H 0.10 0.35 6.06 -51.93 -0.31 0.04 16 29 H 0.08 0.33 5.39 -51.93 -0.28 0.05 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.78 7.93 -51.93 -0.41 1.37 16 33 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.05 0.88 6.47 -51.93 -0.34 0.54 16 35 H 0.08 1.85 6.76 -51.93 -0.35 1.50 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.03 0.81 6.99 -51.93 -0.36 0.45 16 38 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 39 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 40 H 0.18 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -38.44 339.03 -8.46 -46.90 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -5.74 Total: -4.41 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.13 Total: 1.58 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.80 Total: -56.63 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.31 Total: -1.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.44 -8.46 -46.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.601 kcal (2) G-P(sol) polarization free energy of solvation -38.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds