Wall clock time and date at job start Tue Mar 31 2020 07:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47061 * 2 1 4 4 C 1.46500 * 119.99627 * 265.52907 * 3 2 1 5 5 C 1.50698 * 109.46868 * 269.42728 * 4 3 2 6 6 H 1.07993 * 120.00413 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99459 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00235 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99658 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46767 * 90.00330 * 9 7 5 11 11 H 1.48500 * 109.47214 * 209.99849 * 9 7 5 12 12 H 1.48492 * 109.47365 * 330.00327 * 9 7 5 13 13 C 1.34773 * 119.99750 * 85.52990 * 3 2 1 14 14 O 1.21286 * 120.00313 * 4.14423 * 13 3 2 15 15 C 1.50703 * 119.99597 * 184.14513 * 13 3 2 16 16 H 1.08992 * 109.47177 * 31.81301 * 15 13 3 17 17 C 1.53004 * 109.46941 * 271.80684 * 15 13 3 18 18 C 1.50704 * 109.46714 * 151.80765 * 15 13 3 19 19 C 1.38410 * 120.02513 * 239.99632 * 18 15 13 20 20 F 1.35102 * 120.01590 * 0.02562 * 19 18 15 21 21 C 1.38481 * 119.97705 * 180.02562 * 19 18 15 22 22 C 1.38210 * 120.02115 * 0.02562 * 21 19 18 23 23 C 1.38214 * 120.05271 * 359.97438 * 22 21 19 24 24 C 1.38424 * 120.02268 * 60.02539 * 18 15 13 25 25 F 1.35101 * 120.01253 * 359.97438 * 24 18 15 26 26 H 1.08994 * 109.47038 * 64.78122 * 1 2 3 27 27 H 1.09003 * 109.46954 * 184.77475 * 1 2 3 28 28 H 1.08996 * 109.47361 * 304.77818 * 1 2 3 29 29 H 1.08997 * 109.47174 * 239.99848 * 2 1 3 30 30 H 1.08997 * 109.47334 * 120.00456 * 2 1 3 31 31 H 1.08997 * 109.47625 * 29.43344 * 4 3 2 32 32 H 1.09008 * 109.46835 * 149.43065 * 4 3 2 33 33 H 0.97003 * 119.99970 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.46870 * 60.58646 * 17 15 13 35 35 H 1.08996 * 109.46797 * 180.58292 * 17 15 13 36 36 H 1.08992 * 109.46894 * 300.58302 * 17 15 13 37 37 H 1.07991 * 119.98893 * 179.97438 * 21 19 18 38 38 H 1.07995 * 119.97461 * 179.72774 * 22 21 19 39 39 H 1.07989 * 119.98616 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3557 2.0388 -1.2649 5 6 3.8104 1.8039 -1.5807 6 1 4.4223 1.2226 -0.9070 7 6 4.3601 2.3312 -2.7301 8 7 3.6151 3.0395 -3.5503 9 14 6.1634 2.0407 -3.1213 10 1 6.3021 0.7978 -3.9221 11 1 6.6933 3.1909 -3.8968 12 1 6.9284 1.9023 -1.8561 13 6 2.1572 2.0469 1.1637 14 8 1.9501 1.4794 2.2154 15 6 2.5697 3.4963 1.1580 16 1 2.1827 3.9807 0.2615 17 6 4.0967 3.5920 1.1707 18 6 2.0132 4.1817 2.3793 19 6 1.1498 5.2543 2.2385 20 9 0.8050 5.6872 1.0060 21 6 0.6394 5.8837 3.3615 22 6 0.9923 5.4415 4.6225 23 6 1.8543 4.3705 4.7643 24 6 2.3655 3.7394 3.6427 25 9 3.2083 2.6926 3.7816 26 1 -0.3633 0.4378 -0.9297 27 1 -0.3633 -1.0241 0.0855 28 1 -0.3634 0.5861 0.8440 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.7393 1.6274 -2.0641 32 1 2.1710 3.1096 -1.1783 33 1 4.0018 3.4102 -4.3591 34 1 4.4986 3.1053 0.2821 35 1 4.3950 4.6403 1.1771 36 1 4.4842 3.0986 2.0620 37 1 -0.0340 6.7209 3.2518 38 1 0.5972 5.9357 5.4977 39 1 2.1297 4.0262 5.7500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121369440.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:28 Heat of formation + Delta-G solvation = -120.781159 kcal Electronic energy + Delta-G solvation = -25150.189554 eV Core-core repulsion = 21307.107989 eV Total energy + Delta-G solvation = -3843.081565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.03640 -49.80874 -41.16584 -39.55500 -36.94681 -35.44166 -34.62565 -32.03695 -31.20495 -30.32280 -28.97401 -26.01520 -24.98369 -24.39982 -23.77194 -22.47822 -19.94485 -19.03532 -18.72490 -18.45380 -17.59052 -17.47439 -16.87755 -16.52534 -16.50913 -16.30943 -16.17489 -15.84149 -15.37810 -14.93031 -14.87545 -14.43566 -14.38191 -13.72203 -13.64694 -13.50929 -13.24206 -13.14495 -13.09187 -13.00842 -12.83904 -12.72378 -12.64417 -12.41729 -12.12141 -11.86981 -11.76446 -11.67508 -10.76130 -10.53534 -9.82689 -9.66641 -9.48076 -8.21221 -6.34474 -0.00514 0.06976 1.40021 1.42317 1.51500 1.70637 2.21433 2.40292 2.51121 2.99658 3.08540 3.42732 3.49950 3.59845 3.83156 3.92855 4.17108 4.23937 4.26000 4.31010 4.36870 4.49926 4.72740 4.77047 4.83009 4.86330 4.93081 4.97885 5.02454 5.08074 5.13469 5.17674 5.22923 5.25717 5.33944 5.64192 5.82677 5.86497 6.03927 6.52161 6.78520 7.26316 7.38498 8.84692 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.005611 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.987269 B = 4989.005855 C = 5415.901281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 N -0.599 5.599 4 C 0.250 3.750 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.025 3.975 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.270 1.270 13 C 0.520 3.480 14 O -0.577 6.577 15 C -0.063 4.063 16 H 0.094 0.906 17 C -0.139 4.139 18 C -0.169 4.169 19 C 0.109 3.891 20 F -0.142 7.142 21 C -0.161 4.161 22 C -0.046 4.046 23 C -0.168 4.168 24 C 0.138 3.862 25 F -0.133 7.133 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.026 0.974 33 H 0.268 0.732 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.172 0.828 38 H 0.190 0.810 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 5.196 13.826 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 N -0.329 5.329 4 C 0.130 3.870 5 C -0.576 4.576 6 H 0.072 0.928 7 C -0.176 4.176 8 N -0.557 5.557 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.195 1.195 13 C 0.308 3.692 14 O -0.458 6.458 15 C -0.084 4.084 16 H 0.112 0.888 17 C -0.196 4.196 18 C -0.172 4.172 19 C 0.090 3.910 20 F -0.121 7.121 21 C -0.179 4.179 22 C -0.064 4.064 23 C -0.187 4.187 24 C 0.119 3.881 25 F -0.111 7.111 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.189 0.811 38 H 0.208 0.792 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.598 4.948 14.112 15.967 hybrid contribution 1.125 -0.426 -1.277 1.755 sum -4.473 4.521 12.835 14.324 Atomic orbital electron populations 1.22004 0.94760 1.02988 1.01123 1.21409 0.95077 0.82449 1.02338 1.48249 1.63006 1.14253 1.07418 1.19151 0.95218 0.92713 0.79960 1.21547 0.95601 1.33714 1.06762 0.92843 1.25608 1.01866 0.94443 0.95661 1.70012 1.37745 1.35062 1.12925 0.85634 0.80255 0.77941 0.78394 1.19965 1.20539 1.19452 1.20458 0.76443 0.88989 0.83327 1.90579 1.53554 1.70269 1.31407 1.19981 0.99051 0.92587 0.96753 0.88783 1.21795 0.91246 1.03036 1.03568 1.19719 1.03060 0.99674 0.94702 1.17601 0.97381 0.95033 0.80998 1.91492 1.90563 1.88634 1.41391 1.21528 1.03084 1.02730 0.90563 1.21344 0.93590 0.93572 0.97864 1.21583 1.00539 0.98516 0.98035 1.17537 0.91551 0.85703 0.93345 1.91494 1.68099 1.55200 1.96329 0.92791 0.89229 0.94216 0.90132 0.91601 0.95987 0.95641 0.92278 0.90529 0.90842 0.92401 0.81056 0.79237 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 10.21 71.98 0.73 -4.17 16 2 C 0.11 4.24 6.11 86.38 0.53 4.77 16 3 N -0.60 -26.87 2.46 -826.14 -2.04 -28.90 16 4 C 0.25 12.41 5.00 85.63 0.43 12.84 16 5 C -0.54 -28.20 7.23 25.60 0.19 -28.02 16 6 H 0.05 2.86 7.71 -2.91 -0.02 2.84 16 7 C 0.02 1.31 5.46 84.66 0.46 1.77 16 8 N -0.92 -50.95 13.29 21.45 0.28 -50.67 16 9 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.52 23.35 6.61 87.66 0.58 23.93 16 14 O -0.58 -27.11 13.14 -3.05 -0.04 -27.15 16 15 C -0.06 -2.59 2.12 -12.28 -0.03 -2.61 16 16 H 0.09 4.15 5.00 -2.39 -0.01 4.14 16 17 C -0.14 -5.58 8.95 71.98 0.64 -4.94 16 18 C -0.17 -6.01 4.68 -19.78 -0.09 -6.10 16 19 C 0.11 3.34 7.25 22.37 0.16 3.50 16 20 F -0.14 -4.81 16.19 44.97 0.73 -4.08 16 21 C -0.16 -3.32 10.03 22.32 0.22 -3.10 16 22 C -0.05 -0.77 10.04 22.26 0.22 -0.54 16 23 C -0.17 -3.77 10.03 22.32 0.22 -3.55 16 24 C 0.14 4.53 6.21 22.37 0.14 4.67 16 25 F -0.13 -5.07 12.89 44.97 0.58 -4.49 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 30 H 0.07 2.57 7.50 -2.39 -0.02 2.55 16 31 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 32 H 0.03 1.34 5.78 -2.38 -0.01 1.33 16 33 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.08 3.45 5.67 -2.39 -0.01 3.44 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.06 2.28 6.32 -2.39 -0.02 2.26 16 37 H 0.17 2.40 8.06 -2.92 -0.02 2.38 16 38 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.17 2.75 8.06 -2.92 -0.02 2.73 16 Total: -1.00 -64.98 327.90 7.03 -57.96 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.07 Total: 14.83 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 4.42 Total: -1.55 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.75 Total: -79.57 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.04 Total: -27.15 kcal Atomic # 9 Polarization: -9.88 SS G_CDS: 1.31 Total: -8.57 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -64.98 7.03 -57.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121369440.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.824 kcal (2) G-P(sol) polarization free energy of solvation -64.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds