Wall clock time and date at job start Tue Mar 31 2020 07:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47339 * 2 1 4 4 C 1.36936 * 120.00158 * 275.53355 * 3 2 1 5 5 H 1.08001 * 120.00159 * 33.62887 * 4 3 2 6 6 C 1.38814 * 119.99653 * 213.63562 * 4 3 2 7 7 N 1.31611 * 120.00215 * 23.35748 * 6 4 3 8 8 Si 1.86800 * 119.99559 * 203.36209 * 6 4 3 9 9 H 1.48504 * 109.47300 * 89.99718 * 8 6 4 10 10 H 1.48503 * 109.47068 * 209.99506 * 8 6 4 11 11 H 1.48502 * 109.47205 * 329.99585 * 8 6 4 12 12 C 1.46499 * 119.99658 * 95.52722 * 3 2 1 13 13 C 1.50696 * 109.47445 * 270.00331 * 12 3 2 14 14 C 1.33326 * 125.95189 * 90.02580 * 13 12 3 15 15 N 1.32124 * 114.57771 * 179.75463 * 14 13 12 16 16 C 1.29689 * 116.86754 * 0.25077 * 15 14 13 17 17 N 1.38607 * 124.94666 * 180.02562 * 16 15 14 18 18 C 1.47015 * 110.99689 * 123.60823 * 17 16 15 19 19 C 1.53106 * 109.25424 * 177.60514 * 18 17 16 20 20 O 1.43014 * 109.26035 * 56.84442 * 19 18 17 21 21 C 1.43019 * 113.73818 * 301.33352 * 20 19 18 22 22 C 1.47009 * 111.00190 * 359.96767 * 17 16 15 23 23 S 1.70966 * 110.09905 * 359.97438 * 16 15 14 24 24 H 1.09003 * 109.46597 * 299.99594 * 1 2 3 25 25 H 1.08999 * 109.46877 * 59.99519 * 1 2 3 26 26 H 1.08999 * 109.47148 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46958 * 240.00673 * 2 1 3 28 28 H 1.08997 * 109.47386 * 120.00485 * 2 1 3 29 29 H 0.97007 * 120.00370 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46975 * 150.00037 * 12 3 2 31 31 H 1.08998 * 109.47241 * 30.00858 * 12 3 2 32 32 H 1.07999 * 122.70971 * 0.02562 * 14 13 12 33 33 H 1.08995 * 109.50538 * 297.53358 * 18 17 16 34 34 H 1.08991 * 109.51119 * 57.67297 * 18 17 16 35 35 H 1.09005 * 109.50306 * 296.91292 * 19 18 17 36 36 H 1.09001 * 109.54191 * 176.80506 * 19 18 17 37 37 H 1.09000 * 109.50191 * 298.73035 * 21 20 19 38 38 H 1.09006 * 109.53872 * 178.62630 * 21 20 19 39 39 H 1.08998 * 109.50720 * 302.32740 * 22 17 16 40 40 H 1.09001 * 109.50820 * 62.46379 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1389 2.0649 -1.1804 5 1 1.4400 1.8830 -1.9835 6 6 3.1593 2.9916 -1.3446 7 7 4.2502 2.9057 -0.6134 8 14 2.9839 4.3605 -2.6035 9 1 2.3502 5.5420 -1.9650 10 1 4.3258 4.7356 -3.1171 11 1 2.1362 3.8921 -3.7292 12 6 2.3778 2.0310 1.2629 13 6 1.1678 2.7252 1.8328 14 6 0.2770 2.1873 2.6663 15 7 -0.6970 3.0025 3.0305 16 6 -0.6718 4.2022 2.5386 17 7 -1.6062 5.1902 2.8073 18 6 -0.9584 6.3960 3.3438 19 6 -2.0163 7.4795 3.5695 20 8 -3.0296 6.9747 4.4434 21 6 -3.6817 5.8007 3.9514 22 6 -2.6407 4.7002 3.7297 23 16 0.6824 4.3880 1.5118 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.9634 3.5531 -0.7284 30 1 3.1656 2.7626 1.0837 31 1 2.7327 1.2807 1.9694 32 1 0.3483 1.1690 3.0190 33 1 -0.4736 6.1579 4.2906 34 1 -0.2143 6.7562 2.6335 35 1 -2.4637 7.7557 2.6147 36 1 -1.5504 8.3557 4.0202 37 1 -4.1775 6.0283 3.0078 38 1 -4.4201 5.4621 4.6782 39 1 -3.1245 3.8226 3.3009 40 1 -2.1827 4.4351 4.6826 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130831725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:58 Heat of formation + Delta-G solvation = 33.832813 kcal Electronic energy + Delta-G solvation = -22378.842165 eV Core-core repulsion = 19128.598302 eV Total energy + Delta-G solvation = -3250.243862 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13299 -38.64278 -36.33018 -35.35469 -32.00475 -31.42598 -30.67515 -28.76694 -27.56023 -25.16953 -24.29718 -23.83185 -22.74719 -20.97061 -20.44983 -19.10543 -17.79177 -16.82918 -16.26054 -16.15133 -15.27165 -15.18751 -15.02601 -14.80948 -14.54876 -13.98627 -13.83867 -13.67469 -13.15826 -12.84193 -12.46662 -12.37887 -11.90835 -11.67999 -11.56451 -11.36513 -11.22006 -10.94067 -10.86861 -10.79709 -10.52461 -10.27130 -10.07933 -9.96376 -9.89375 -9.41059 -9.05742 -8.65298 -8.47633 -7.58662 -6.80429 -5.95875 -3.45976 1.42270 1.82754 2.55515 3.29060 3.34728 3.37749 3.40017 3.63489 3.79506 4.38434 4.62032 4.80875 4.92507 4.98471 5.15680 5.15942 5.20467 5.36513 5.46667 5.46885 5.64149 5.76549 5.86707 5.98872 6.03471 6.15284 6.32191 6.36790 6.45983 6.57939 6.61750 6.68080 6.83863 6.91669 7.08658 7.14327 7.42859 7.69904 8.32374 8.33137 9.01044 9.64420 10.19875 11.04441 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.005042 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.450190 B = 5551.840511 C = 6481.638955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.142 3.858 3 N -0.571 5.571 4 C -0.252 4.252 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.881 5.881 8 Si 0.889 3.111 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.275 1.275 12 C 0.200 3.800 13 C -0.184 4.184 14 C 0.011 3.989 15 N -0.507 5.507 16 C 0.163 3.837 17 N -0.446 5.446 18 C 0.017 3.983 19 C 0.066 3.934 20 O -0.386 6.386 21 C 0.062 3.938 22 C 0.034 3.966 23 S 0.148 5.852 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.258 0.742 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.162 0.838 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 5.204 8.310 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 N -0.289 5.289 4 C -0.382 4.382 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.523 5.523 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.200 1.200 12 C 0.071 3.929 13 C -0.309 4.309 14 C -0.140 4.140 15 N -0.228 5.228 16 C -0.205 4.205 17 N -0.168 5.168 18 C -0.111 4.111 19 C -0.011 4.011 20 O -0.304 6.304 21 C -0.015 4.015 22 C -0.095 4.095 23 S 0.400 5.600 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.069 0.931 32 H 0.179 0.821 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.838 6.182 7.768 13.977 hybrid contribution 0.147 -0.583 -0.061 0.604 sum -9.691 5.599 7.708 13.590 Atomic orbital electron populations 1.22353 0.99788 0.99103 1.01640 1.20888 0.91855 0.86530 0.99099 1.43868 1.74937 1.08197 1.01916 1.19094 1.07908 1.18538 0.92656 0.91831 1.25056 0.94045 1.01250 0.98468 1.69957 1.04615 1.35519 1.42250 0.86482 0.77292 0.82965 0.81487 1.20676 1.21498 1.20015 1.19697 0.90832 0.96490 0.85872 1.27575 1.06734 0.95206 1.01419 1.21136 0.91291 1.00127 1.01444 1.66616 1.26942 1.02778 1.26440 1.24779 0.99930 0.94210 1.01607 1.59364 1.10363 1.03476 1.43594 1.23069 0.97633 0.90270 1.00140 1.22677 0.88217 0.95228 0.94955 1.87978 1.52271 1.43744 1.46409 1.22778 0.94102 0.84548 1.00114 1.22671 0.92877 0.98504 0.95473 1.84103 1.18504 1.13641 1.43752 0.93286 0.93366 0.94469 0.93380 0.94432 0.93190 0.87001 0.93060 0.82057 0.92568 0.88839 0.91865 0.87822 0.92149 0.88030 0.88701 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.21 37.16 0.38 -2.77 16 2 C 0.14 2.90 6.44 -4.04 -0.03 2.87 16 3 N -0.57 -13.48 2.45 -174.61 -0.43 -13.91 16 4 C -0.25 -6.55 9.48 -15.06 -0.14 -6.70 16 5 H 0.06 1.69 7.93 -52.49 -0.42 1.28 16 6 C 0.01 0.33 4.94 -17.43 -0.09 0.24 16 7 N -0.88 -23.84 11.31 55.49 0.63 -23.21 16 8 Si 0.89 20.79 29.61 -169.99 -5.03 15.76 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.20 4.47 5.86 -5.20 -0.03 4.44 16 13 C -0.18 -3.76 6.12 -36.03 -0.22 -3.98 16 14 C 0.01 0.20 9.64 -19.14 -0.18 0.02 16 15 N -0.51 -9.61 9.52 -15.21 -0.14 -9.75 16 16 C 0.16 2.94 6.73 -87.68 -0.59 2.35 16 17 N -0.45 -6.80 4.79 -175.08 -0.84 -7.64 16 18 C 0.02 0.22 5.49 -3.71 -0.02 0.20 16 19 C 0.07 0.70 7.01 37.21 0.26 0.96 16 20 O -0.39 -4.62 10.83 -35.23 -0.38 -5.00 16 21 C 0.06 0.67 7.01 37.21 0.26 0.93 16 22 C 0.03 0.46 4.96 -3.71 -0.02 0.44 16 23 S 0.15 2.88 22.35 -107.50 -2.40 0.48 16 24 H 0.05 0.93 6.39 -51.93 -0.33 0.60 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.00 8.08 -51.92 -0.42 0.58 16 28 H 0.04 0.70 7.83 -51.93 -0.41 0.29 16 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.11 2.81 5.31 -51.93 -0.28 2.54 16 31 H 0.05 1.07 7.86 -51.93 -0.41 0.66 16 32 H 0.16 2.81 8.04 -52.49 -0.42 2.38 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.16 7.48 -51.93 -0.39 0.77 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.33 8.01 -51.93 -0.42 0.91 16 40 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -28.59 336.44 -9.95 -38.55 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.00 Total: 0.66 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.42 Total: -1.00 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.78 Total: -54.51 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.38 Total: -5.00 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.40 Total: 0.48 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.59 -9.95 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130831725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.379 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds