Wall clock time and date at job start Tue Mar 31 2020 07:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47339 * 2 1 4 4 C 1.36936 * 120.00158 * 275.53355 * 3 2 1 5 5 H 1.08001 * 120.00159 * 33.62887 * 4 3 2 6 6 C 1.38814 * 119.99653 * 213.63562 * 4 3 2 7 7 N 1.31611 * 120.00215 * 23.35748 * 6 4 3 8 8 Si 1.86800 * 119.99559 * 203.36209 * 6 4 3 9 9 H 1.48504 * 109.47300 * 89.99718 * 8 6 4 10 10 H 1.48503 * 109.47068 * 209.99506 * 8 6 4 11 11 H 1.48502 * 109.47205 * 329.99585 * 8 6 4 12 12 C 1.46499 * 119.99658 * 95.52722 * 3 2 1 13 13 C 1.50696 * 109.47445 * 270.00331 * 12 3 2 14 14 C 1.33326 * 125.95189 * 90.02580 * 13 12 3 15 15 N 1.32124 * 114.57771 * 179.75463 * 14 13 12 16 16 C 1.29689 * 116.86754 * 0.25077 * 15 14 13 17 17 N 1.38607 * 124.94666 * 180.02562 * 16 15 14 18 18 C 1.47015 * 110.99689 * 123.60823 * 17 16 15 19 19 C 1.53106 * 109.25424 * 177.60514 * 18 17 16 20 20 O 1.43014 * 109.26035 * 56.84442 * 19 18 17 21 21 C 1.43019 * 113.73818 * 301.33352 * 20 19 18 22 22 C 1.47009 * 111.00190 * 359.96767 * 17 16 15 23 23 S 1.70966 * 110.09905 * 359.97438 * 16 15 14 24 24 H 1.09003 * 109.46597 * 299.99594 * 1 2 3 25 25 H 1.08999 * 109.46877 * 59.99519 * 1 2 3 26 26 H 1.08999 * 109.47148 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46958 * 240.00673 * 2 1 3 28 28 H 1.08997 * 109.47386 * 120.00485 * 2 1 3 29 29 H 0.97007 * 120.00370 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46975 * 150.00037 * 12 3 2 31 31 H 1.08998 * 109.47241 * 30.00858 * 12 3 2 32 32 H 1.07999 * 122.70971 * 0.02562 * 14 13 12 33 33 H 1.08995 * 109.50538 * 297.53358 * 18 17 16 34 34 H 1.08991 * 109.51119 * 57.67297 * 18 17 16 35 35 H 1.09005 * 109.50306 * 296.91292 * 19 18 17 36 36 H 1.09001 * 109.54191 * 176.80506 * 19 18 17 37 37 H 1.09000 * 109.50191 * 298.73035 * 21 20 19 38 38 H 1.09006 * 109.53872 * 178.62630 * 21 20 19 39 39 H 1.08998 * 109.50720 * 302.32740 * 22 17 16 40 40 H 1.09001 * 109.50820 * 62.46379 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1389 2.0649 -1.1804 5 1 1.4400 1.8830 -1.9835 6 6 3.1593 2.9916 -1.3446 7 7 4.2502 2.9057 -0.6134 8 14 2.9839 4.3605 -2.6035 9 1 2.3502 5.5420 -1.9650 10 1 4.3258 4.7356 -3.1171 11 1 2.1362 3.8921 -3.7292 12 6 2.3778 2.0310 1.2629 13 6 1.1678 2.7252 1.8328 14 6 0.2770 2.1873 2.6663 15 7 -0.6970 3.0025 3.0305 16 6 -0.6718 4.2022 2.5386 17 7 -1.6062 5.1902 2.8073 18 6 -0.9584 6.3960 3.3438 19 6 -2.0163 7.4795 3.5695 20 8 -3.0296 6.9747 4.4434 21 6 -3.6817 5.8007 3.9514 22 6 -2.6407 4.7002 3.7297 23 16 0.6824 4.3880 1.5118 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.9634 3.5531 -0.7284 30 1 3.1656 2.7626 1.0837 31 1 2.7327 1.2807 1.9694 32 1 0.3483 1.1690 3.0190 33 1 -0.4736 6.1579 4.2906 34 1 -0.2143 6.7562 2.6335 35 1 -2.4637 7.7557 2.6147 36 1 -1.5504 8.3557 4.0202 37 1 -4.1775 6.0283 3.0078 38 1 -4.4201 5.4621 4.6782 39 1 -3.1245 3.8226 3.3009 40 1 -2.1827 4.4351 4.6826 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130831725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:58 Heat of formation + Delta-G solvation = 16.652881 kcal Electronic energy + Delta-G solvation = -22379.587142 eV Core-core repulsion = 19128.598302 eV Total energy + Delta-G solvation = -3250.988840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34228 -39.93185 -37.94344 -36.61984 -33.87368 -32.42247 -32.19032 -30.32997 -28.89103 -26.83711 -25.43392 -25.29331 -24.24650 -22.26716 -21.96900 -20.45837 -19.26913 -18.58841 -17.54795 -17.10898 -16.87723 -16.44607 -16.15808 -15.98042 -15.78665 -15.66616 -15.56944 -15.13921 -14.53620 -14.31294 -14.12777 -13.55353 -13.39498 -13.20979 -12.93678 -12.72697 -12.60779 -12.50168 -12.41784 -12.37482 -12.02026 -11.78799 -11.69492 -11.61826 -11.13752 -10.62804 -10.58390 -10.49907 -10.04989 -9.02611 -8.68781 -7.89911 -5.44548 -0.07425 0.32837 1.02375 1.42319 1.47169 1.52480 1.88748 2.45855 2.49229 2.84581 3.19058 3.53544 3.75252 3.77519 3.91433 4.02465 4.12429 4.21822 4.40377 4.40521 4.44502 4.56115 4.64580 4.71430 4.77372 4.81251 4.82440 4.89860 4.97141 5.05135 5.13271 5.25248 5.42732 5.53949 5.59430 5.68595 5.76017 6.05842 6.40137 6.82370 7.09942 7.78840 8.29901 9.07268 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.005042 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.450190 B = 5551.840511 C = 6481.638955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 N -0.587 5.587 4 C -0.258 4.258 5 H 0.051 0.949 6 C -0.022 4.022 7 N -0.907 5.907 8 Si 0.932 3.068 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.273 1.273 12 C 0.209 3.791 13 C -0.207 4.207 14 C 0.027 3.973 15 N -0.521 5.521 16 C 0.185 3.815 17 N -0.452 5.452 18 C 0.015 3.985 19 C 0.070 3.930 20 O -0.395 6.395 21 C 0.067 3.933 22 C 0.036 3.964 23 S 0.126 5.874 24 H 0.043 0.957 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.255 0.745 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.180 0.820 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.567 5.873 9.313 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.013 3.987 3 N -0.306 5.306 4 C -0.389 4.389 5 H 0.068 0.932 6 C -0.221 4.221 7 N -0.551 5.551 8 Si 0.760 3.240 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.198 1.198 12 C 0.080 3.920 13 C -0.332 4.332 14 C -0.124 4.124 15 N -0.242 5.242 16 C -0.184 4.184 17 N -0.174 5.174 18 C -0.113 4.113 19 C -0.007 4.007 20 O -0.314 6.314 21 C -0.010 4.010 22 C -0.093 4.093 23 S 0.378 5.622 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.197 0.803 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.086 0.914 38 H 0.145 0.855 39 H 0.106 0.894 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.738 6.852 8.778 16.180 hybrid contribution 0.616 -0.764 -0.265 1.017 sum -11.122 6.088 8.513 15.272 Atomic orbital electron populations 1.22173 0.98203 1.00635 1.00301 1.21001 0.92980 0.85187 0.99506 1.44026 1.75473 1.09453 1.01672 1.19117 1.07366 1.18983 0.93422 0.93166 1.25508 0.93896 1.02679 0.99975 1.70047 1.05146 1.36150 1.43765 0.85803 0.77020 0.81127 0.80041 1.20496 1.21571 1.19776 1.19408 0.90790 0.96102 0.85701 1.27170 1.06822 0.95841 1.03373 1.21388 0.90391 1.00664 0.99925 1.66726 1.27174 1.03138 1.27130 1.25092 0.98870 0.94461 0.99961 1.59432 1.10102 1.03459 1.44415 1.23208 0.98576 0.89740 0.99727 1.22819 0.87382 0.94915 0.95603 1.87979 1.52482 1.43904 1.47031 1.22867 0.93411 0.83313 1.01394 1.22751 0.92769 0.99524 0.94274 1.84101 1.19843 1.13680 1.44590 0.93802 0.95356 0.91435 0.94319 0.92612 0.93540 0.89830 0.92129 0.80349 0.92995 0.88709 0.91065 0.85153 0.91353 0.85529 0.89360 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 10.21 71.98 0.73 -4.78 16 2 C 0.14 5.55 6.44 86.38 0.56 6.11 16 3 N -0.59 -27.88 2.45 -706.34 -1.73 -29.61 16 4 C -0.26 -13.65 9.48 84.03 0.80 -12.85 16 5 H 0.05 2.74 7.93 -2.91 -0.02 2.71 16 6 C -0.02 -1.19 4.94 84.86 0.42 -0.77 16 7 N -0.91 -50.12 11.31 21.65 0.24 -49.87 16 8 Si 0.93 43.09 29.61 68.60 2.03 45.12 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.21 9.40 5.86 85.63 0.50 9.90 16 13 C -0.21 -8.42 6.12 24.57 0.15 -8.27 16 14 C 0.03 0.98 9.64 83.54 0.81 1.79 16 15 N -0.52 -19.01 9.52 -202.03 -1.92 -20.93 16 16 C 0.18 6.47 6.73 179.32 1.21 7.68 16 17 N -0.45 -13.00 4.79 -707.82 -3.39 -16.40 16 18 C 0.01 0.35 5.49 86.32 0.47 0.83 16 19 C 0.07 1.26 7.01 72.02 0.50 1.76 16 20 O -0.40 -8.25 10.83 -148.98 -1.61 -9.86 16 21 C 0.07 1.25 7.01 72.01 0.50 1.75 16 22 C 0.04 0.89 4.96 86.31 0.43 1.32 16 23 S 0.13 4.88 22.35 -56.49 -1.26 3.61 16 24 H 0.04 1.60 6.39 -2.39 -0.02 1.58 16 25 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 28 H 0.06 2.01 7.83 -2.39 -0.02 1.99 16 29 H 0.26 13.66 8.31 -92.70 -0.77 12.89 16 30 H 0.08 4.31 5.31 -2.39 -0.01 4.30 16 31 H 0.06 2.52 7.86 -2.39 -0.02 2.51 16 32 H 0.18 5.86 8.04 -2.91 -0.02 5.84 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 2.21 7.48 -2.39 -0.02 2.20 16 35 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.09 2.31 8.01 -2.39 -0.02 2.29 16 40 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 Total: -1.00 -60.99 336.44 0.47 -60.52 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.03 Total: 12.94 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 7.08 Total: 4.47 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.80 Total: -116.81 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.61 Total: -9.86 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.26 Total: 3.61 kcal Total: -60.99 0.47 -60.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130831725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.175 kcal (2) G-P(sol) polarization free energy of solvation -60.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds