Wall clock time and date at job start Tue Mar 31 2020 08:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 102.99561 * 2 1 4 4 C 1.53008 * 109.46987 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47092 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47299 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47723 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99358 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00677 * 180.02562 * 7 6 5 10 10 C 1.40154 * 120.00504 * 179.97438 * 9 7 6 11 11 C 1.40411 * 125.97106 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86611 * 179.74212 * 11 10 9 13 13 N 1.34965 * 107.86302 * 0.38043 * 12 11 10 14 14 C 1.46495 * 125.97869 * 179.87777 * 13 12 11 15 15 C 1.50702 * 109.47571 * 124.71943 * 14 13 12 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31221 * 125.97729 * 179.97438 * 10 9 7 24 24 H 1.08998 * 109.47338 * 300.00057 * 1 2 3 25 25 H 1.08996 * 109.46963 * 60.00720 * 1 2 3 26 26 H 1.09000 * 109.46788 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47649 * 59.99814 * 3 2 1 28 28 H 1.09003 * 109.47170 * 299.99548 * 3 2 1 29 29 H 1.09004 * 109.47139 * 59.99897 * 4 3 2 30 30 H 1.08995 * 109.47221 * 299.99682 * 4 3 2 31 31 H 1.09004 * 109.46801 * 60.00195 * 5 4 3 32 32 H 1.08995 * 109.47512 * 300.00652 * 5 4 3 33 33 H 1.09000 * 109.47420 * 59.99740 * 6 5 4 34 34 H 1.09009 * 109.47185 * 300.00226 * 6 5 4 35 35 H 0.97004 * 119.99445 * 359.97438 * 9 7 6 36 36 H 1.07998 * 126.06914 * 359.97438 * 11 10 9 37 37 H 1.08001 * 126.07068 * 180.26820 * 12 11 10 38 38 H 1.09000 * 109.47378 * 4.71603 * 14 13 12 39 39 H 1.09001 * 109.47153 * 244.71723 * 14 13 12 40 40 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 6 3.7422 1.9401 0.0006 5 6 4.0863 3.4309 0.0000 6 6 5.6065 3.6034 0.0013 7 6 5.9455 5.0717 0.0013 8 8 5.0583 5.8989 0.0008 9 7 7.2343 5.4659 0.0018 10 6 7.5496 6.8315 0.0013 11 6 6.6278 7.8908 0.0007 12 6 7.3265 9.0487 0.0061 13 7 8.6402 8.7396 0.0014 14 6 9.7495 9.6965 0.0022 15 6 10.6616 9.4074 1.1665 16 1 10.4371 8.5926 1.8389 17 6 11.7820 10.1837 1.3738 18 7 12.5750 9.9348 2.3931 19 14 12.1699 11.5934 0.2112 20 1 13.0282 11.1002 -0.8957 21 1 10.9056 12.1367 -0.3471 22 1 12.8841 12.6639 0.9522 23 7 8.7576 7.3438 0.0022 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8030 2.2372 0.8899 28 1 1.8030 2.2371 -0.8900 29 1 4.1616 1.4704 -0.8891 30 1 4.1608 1.4706 0.8908 31 1 3.6669 3.9009 0.8896 32 1 3.6677 3.9000 -0.8903 33 1 6.0264 3.1333 -0.8880 34 1 6.0247 3.1344 0.8920 35 1 7.9437 4.8043 0.0026 36 1 5.5519 7.7974 0.0002 37 1 6.9075 10.0441 0.0112 38 1 9.3559 10.7090 0.0916 39 1 10.3089 9.6051 -0.9289 40 1 13.3611 10.4834 2.5413 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152492289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:46 Heat of formation + Delta-G solvation = 8.261685 kcal Electronic energy + Delta-G solvation = -20313.648211 eV Core-core repulsion = 17062.295502 eV Total energy + Delta-G solvation = -3251.352710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.21829 -40.61318 -36.60179 -36.05374 -35.18564 -33.19956 -31.62574 -30.96226 -29.77610 -28.98849 -26.18139 -24.42677 -22.97639 -22.11027 -21.48740 -20.86669 -19.10751 -18.27897 -17.79080 -17.20306 -17.13481 -16.94089 -16.37577 -16.01709 -15.46570 -15.24576 -14.91562 -14.78904 -14.56496 -14.45049 -14.04945 -13.95432 -13.83851 -13.68340 -13.59543 -12.98186 -12.65879 -12.40468 -12.22943 -12.16836 -12.05492 -11.82638 -11.63863 -11.52378 -11.43334 -10.92347 -10.88252 -10.81882 -9.76765 -9.10355 -8.68453 -8.38069 -6.48628 0.75667 0.95202 1.33224 1.39005 1.41833 1.47752 1.51297 1.69482 2.24897 2.28524 2.40417 2.94546 3.61451 3.76662 3.94944 3.95894 4.21188 4.28691 4.32536 4.33358 4.39913 4.46393 4.59526 4.73774 4.74896 4.78398 4.84124 4.88727 4.90380 4.90915 5.02248 5.17747 5.24208 5.28807 5.43877 5.90253 6.00705 6.26800 6.40757 6.57344 7.00593 7.14380 7.16464 8.78937 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.056045 B = 0.001961 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.479513 B =14274.569991 C =14561.651036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.321 6.321 3 C -0.075 4.075 4 C -0.096 4.096 5 C -0.093 4.093 6 C -0.124 4.124 7 C 0.516 3.484 8 O -0.552 6.552 9 N -0.630 5.630 10 C 0.263 3.737 11 C -0.295 4.295 12 C 0.059 3.941 13 N -0.345 5.345 14 C 0.239 3.761 15 C -0.548 4.548 16 H 0.026 0.974 17 C 0.014 3.986 18 N -0.942 5.942 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.230 1.230 22 H -0.278 1.278 23 N -0.350 5.350 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.424 0.576 36 H 0.169 0.831 37 H 0.209 0.791 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.000 -15.298 -8.040 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.095 6.095 3 C -0.223 4.223 4 C -0.135 4.135 5 C -0.133 4.133 6 C -0.164 4.164 7 C 0.306 3.694 8 O -0.428 6.428 9 N -0.279 5.279 10 C 0.008 3.992 11 C -0.326 4.326 12 C -0.089 4.089 13 N -0.127 5.127 14 C 0.119 3.881 15 C -0.586 4.586 16 H 0.044 0.956 17 C -0.184 4.184 18 N -0.580 5.580 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.153 1.153 22 H -0.203 1.203 23 N -0.181 5.181 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.262 0.738 36 H 0.186 0.814 37 H 0.226 0.774 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.515 -15.744 -7.947 27.054 hybrid contribution -0.547 1.377 0.168 1.491 sum -21.062 -14.368 -7.779 26.656 Atomic orbital electron populations 1.23408 0.91476 1.07329 1.05722 1.87072 1.10596 1.13638 1.98211 1.23402 1.00854 0.92462 1.05557 1.21274 0.92375 0.95781 1.04037 1.21250 0.93300 0.95483 1.03251 1.21723 0.98929 0.88277 1.07478 1.21742 0.80150 0.93499 0.74051 1.90613 1.47432 1.55675 1.49119 1.42835 1.09856 1.02642 1.72608 1.19608 0.91823 0.86907 1.00816 1.21769 1.01336 0.89406 1.20127 1.23252 0.83288 1.02036 1.00327 1.48511 1.06427 1.03125 1.54643 1.19890 0.83842 0.87094 0.97227 1.21238 1.09270 1.16590 1.11533 0.95593 1.25927 0.94734 1.00557 0.97226 1.70049 1.15430 1.41471 1.31099 0.85608 0.80502 0.77781 0.78417 1.19037 1.15259 1.20310 1.77311 1.19911 0.90563 1.30313 0.89753 0.89664 0.87289 0.89659 0.89479 0.90204 0.90427 0.91859 0.91544 0.85594 0.85996 0.73796 0.81421 0.77412 0.89969 0.93774 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.76 113.37 1.22 0.25 16 2 S -0.32 -4.64 22.38 -56.49 -1.26 -5.91 16 3 C -0.07 -0.88 5.94 71.98 0.43 -0.45 16 4 C -0.10 -1.06 5.22 30.60 0.16 -0.90 16 5 C -0.09 -1.27 4.50 30.59 0.14 -1.14 16 6 C -0.12 -1.67 5.70 29.84 0.17 -1.50 16 7 C 0.52 12.86 7.80 87.66 0.68 13.54 16 8 O -0.55 -17.55 13.11 -3.08 -0.04 -17.59 16 9 N -0.63 -18.16 5.45 -307.52 -1.68 -19.84 16 10 C 0.26 10.36 8.11 133.33 1.08 11.44 16 11 C -0.30 -11.17 9.61 22.11 0.21 -10.96 16 12 C 0.06 2.18 11.44 83.52 0.96 3.14 16 13 N -0.35 -15.52 3.67 -351.85 -1.29 -16.81 16 14 C 0.24 11.09 5.33 85.63 0.46 11.55 16 15 C -0.55 -31.75 9.79 25.60 0.25 -31.50 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 17 C 0.01 0.82 5.47 84.65 0.46 1.28 16 18 N -0.94 -58.06 13.96 21.45 0.30 -57.76 16 19 Si 0.96 40.65 27.47 68.60 1.88 42.53 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.23 -8.43 6.54 99.48 0.65 -7.78 16 22 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 23 N -0.35 -16.27 12.42 -54.45 -0.68 -16.95 16 24 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.03 8.10 -2.38 -0.02 1.01 16 32 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.42 9.77 8.82 -92.71 -0.82 8.95 16 36 H 0.17 6.09 5.92 -2.91 -0.02 6.08 16 37 H 0.21 5.68 8.06 -2.91 -0.02 5.65 16 38 H 0.08 3.31 7.12 -2.39 -0.02 3.30 16 39 H 0.04 1.98 7.57 -2.39 -0.02 1.96 16 40 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -78.15 352.19 3.62 -74.54 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.16 Total: 23.04 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 6.22 Total: -5.25 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -3.34 Total: -111.36 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.04 Total: -17.59 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.88 Total: 42.53 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -1.26 Total: -5.91 kcal Total: -78.15 3.62 -74.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152492289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.798 kcal (2) G-P(sol) polarization free energy of solvation -78.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds