Wall clock time and date at job start Tue Mar 31 2020 07:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.47137 * 240.00434 * 2 1 3 5 5 C 1.50700 * 109.47208 * 64.99916 * 4 2 1 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 2 8 8 C 1.46496 * 120.00345 * 359.72090 * 7 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 10 10 C 1.50709 * 109.47273 * 89.99834 * 9 7 5 11 11 H 1.07999 * 119.99476 * 359.97438 * 10 9 7 12 12 C 1.37873 * 120.00210 * 179.97438 * 10 9 7 13 13 N 1.31517 * 119.99914 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00074 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47117 * 359.97438 * 14 12 10 16 16 H 1.48508 * 109.47015 * 120.00082 * 14 12 10 17 17 H 1.48507 * 109.47126 * 239.99903 * 14 12 10 18 18 C 1.50699 * 109.47084 * 120.00492 * 2 1 3 19 19 C 1.38230 * 119.98841 * 59.72262 * 18 2 1 20 20 C 1.38186 * 120.04933 * 179.76867 * 19 18 2 21 21 C 1.38494 * 120.02471 * 0.50981 * 20 19 18 22 22 F 1.35104 * 120.01542 * 179.76787 * 21 20 19 23 23 C 1.38404 * 119.97538 * 359.74435 * 21 20 19 24 24 C 1.38435 * 119.94855 * 0.02562 * 23 21 20 25 25 F 1.35104 * 120.01212 * 180.02562 * 24 23 21 26 26 H 1.08996 * 109.47118 * 300.00234 * 1 2 3 27 27 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 28 28 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46730 * 304.99822 * 4 2 1 30 30 H 1.08998 * 109.46846 * 185.00367 * 4 2 1 31 31 H 1.08997 * 109.47115 * 90.00316 * 8 7 5 32 32 H 1.08995 * 109.47364 * 210.00706 * 8 7 5 33 33 H 1.09002 * 109.47090 * 330.00257 * 8 7 5 34 34 H 1.09000 * 109.46889 * 209.99487 * 9 7 5 35 35 H 1.09001 * 109.47460 * 330.00097 * 9 7 5 36 36 H 0.97000 * 120.00447 * 179.97438 * 13 12 10 37 37 H 1.08002 * 119.97623 * 0.02562 * 19 18 2 38 38 H 1.07996 * 119.98964 * 180.25331 * 20 19 18 39 39 H 1.07997 * 120.02489 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 8 1.0109 1.0871 -2.3632 7 7 1.9801 -0.3944 -3.7005 8 6 2.7412 -1.6387 -3.8374 9 6 1.5874 0.3591 -4.8938 10 6 2.6667 1.3529 -5.2383 11 1 3.5561 1.4170 -4.6289 12 6 2.5188 2.1802 -6.3313 13 7 1.4356 2.1024 -7.0730 14 14 3.8564 3.4124 -6.7578 15 1 4.9627 3.3025 -5.7735 16 1 4.3750 3.1283 -8.1201 17 1 3.2943 4.7864 -6.7188 18 6 2.0324 -0.7105 1.2304 19 6 1.6935 -2.0322 1.4517 20 6 2.1574 -2.6864 2.5771 21 6 2.9537 -2.0151 3.4900 22 9 3.4032 -2.6535 4.5925 23 6 3.2893 -0.6902 3.2721 24 6 2.8279 -0.0373 2.1419 25 9 3.1551 1.2559 1.9277 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 3.1264 -0.7994 -1.2056 31 1 2.0519 -2.4791 -3.9182 32 1 3.3603 -1.5892 -4.7330 33 1 3.3776 -1.7735 -2.9628 34 1 1.4470 -0.3285 -5.7278 35 1 0.6549 0.8887 -4.6986 36 1 1.3312 2.6847 -7.8418 37 1 1.0692 -2.5553 0.7424 38 1 1.8954 -3.7202 2.7469 39 1 3.9105 -0.1661 3.9832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160943802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:13 Heat of formation + Delta-G solvation = -110.868988 kcal Electronic energy + Delta-G solvation = -23632.417400 eV Core-core repulsion = 19789.765659 eV Total energy + Delta-G solvation = -3842.651741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.25797 -49.12984 -39.77999 -38.75225 -35.33434 -34.48274 -32.61012 -31.08015 -29.76847 -28.42184 -27.09795 -25.60495 -24.12451 -23.27210 -22.57018 -20.46514 -18.53992 -18.29076 -17.42701 -16.63635 -16.50668 -16.19299 -16.00246 -15.50397 -15.29600 -15.20645 -15.00992 -14.65244 -14.35284 -14.12529 -13.48886 -13.17567 -12.97034 -12.77993 -12.50914 -12.19311 -12.08828 -12.02327 -11.86591 -11.63372 -11.26823 -11.05372 -10.98627 -10.83916 -10.71772 -10.56109 -10.15806 -9.60112 -9.33510 -8.90748 -8.75468 -8.44224 -7.63803 -6.04888 -4.09546 0.69379 0.73882 3.08785 3.29598 3.36756 3.39544 3.44970 3.61855 3.92224 4.17621 4.30917 4.42038 4.49624 4.57450 4.86297 5.02496 5.14816 5.22238 5.30145 5.46075 5.51389 5.61036 5.64375 5.67592 5.72552 5.76810 5.84580 5.91273 5.96823 6.10356 6.20560 6.38176 6.49648 6.59260 7.05046 7.43806 7.54093 7.91780 8.23063 8.41625 8.90236 9.09731 9.55840 11.03197 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.003274 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.966841 B = 8550.470470 C = 8882.381703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 H 0.094 0.906 4 C -0.132 4.132 5 C 0.505 3.495 6 O -0.538 6.538 7 N -0.603 5.603 8 C 0.083 3.917 9 C 0.245 3.755 10 C -0.525 4.525 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.282 1.282 18 C -0.112 4.112 19 C -0.058 4.058 20 C -0.161 4.161 21 C 0.119 3.881 22 F -0.135 7.135 23 C -0.191 4.191 24 C 0.133 3.867 25 F -0.125 7.125 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 -12.074 18.747 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.058 4.058 3 H 0.113 0.887 4 C -0.172 4.172 5 C 0.291 3.709 6 O -0.416 6.416 7 N -0.335 5.335 8 C -0.061 4.061 9 C 0.125 3.875 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.208 1.208 18 C -0.113 4.113 19 C -0.076 4.076 20 C -0.180 4.180 21 C 0.100 3.900 22 F -0.114 7.114 23 C -0.211 4.211 24 C 0.114 3.886 25 F -0.104 7.104 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.327 -11.424 18.645 21.907 hybrid contribution 1.085 0.716 -0.129 1.307 sum 2.413 -10.708 18.516 21.525 Atomic orbital electron populations 1.21958 0.93063 1.01608 1.03744 1.19866 0.97249 0.99842 0.88813 0.88726 1.21769 1.02440 0.99910 0.93063 1.20227 0.80517 0.85798 0.84347 1.90638 1.40564 1.24354 1.86031 1.48171 1.53779 1.23959 1.07632 1.21637 0.95645 0.86364 1.02468 1.19288 0.96929 0.90906 0.80336 1.21478 1.04442 1.19253 1.11263 0.92445 1.24938 0.95905 0.97195 0.96111 1.69940 1.26613 1.39324 1.17549 0.86448 0.81769 0.81213 0.78029 1.19806 1.20966 1.20850 1.20187 0.98633 0.95095 0.97380 1.20799 0.97596 0.92901 0.96299 1.21193 1.00246 1.01516 0.95061 1.17283 0.97583 0.90328 0.84840 1.91523 1.87469 1.81547 1.50813 1.21010 1.05768 0.94630 0.99659 1.17192 0.97473 0.79348 0.94622 1.91552 1.90659 1.33662 1.94506 0.92993 0.89328 0.93188 0.89421 0.89411 0.93759 0.90814 0.92471 0.95077 0.93800 0.92776 0.83783 0.84064 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.74 37.16 0.32 -1.60 16 2 C -0.04 -0.52 2.19 -91.77 -0.20 -0.72 16 3 H 0.09 1.51 6.94 -51.93 -0.36 1.15 16 4 C -0.13 -1.82 3.47 -27.88 -0.10 -1.91 16 5 C 0.50 9.99 7.39 -10.98 -0.08 9.91 16 6 O -0.54 -12.84 13.54 5.55 0.08 -12.77 16 7 N -0.60 -12.48 2.86 -182.96 -0.52 -13.00 16 8 C 0.08 1.27 10.24 59.84 0.61 1.88 16 9 C 0.24 6.34 5.16 -5.19 -0.03 6.32 16 10 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 14 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 C -0.11 -1.24 4.79 -104.54 -0.50 -1.74 16 19 C -0.06 -0.50 8.76 -39.60 -0.35 -0.85 16 20 C -0.16 -1.31 10.03 -39.51 -0.40 -1.71 16 21 C 0.12 1.12 7.30 -39.43 -0.29 0.84 16 22 F -0.14 -1.32 17.27 2.25 0.04 -1.29 16 23 C -0.19 -1.90 10.01 -39.45 -0.39 -2.29 16 24 C 0.13 1.54 7.24 -39.43 -0.29 1.26 16 25 F -0.13 -1.67 16.19 2.25 0.04 -1.64 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.46 5.95 -51.93 -0.31 1.15 16 28 H 0.05 0.54 7.37 -51.93 -0.38 0.15 16 29 H 0.09 0.96 7.55 -51.92 -0.39 0.57 16 30 H 0.09 1.12 7.41 -51.93 -0.38 0.74 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 33 H 0.06 0.71 6.45 -51.93 -0.33 0.37 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 37 H 0.14 0.98 7.16 -52.49 -0.38 0.60 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -32.59 335.07 -6.71 -39.29 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -5.00 Total: -2.47 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.10 Total: -4.23 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.21 Total: -38.86 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.59 -6.71 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160943802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.577 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds