Wall clock time and date at job start Tue Mar 31 2020 07:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 120.00070 * 2 1 4 4 O 1.21289 * 119.99695 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00378 * 180.02562 * 3 2 1 6 6 C 1.50702 * 109.47045 * 180.02562 * 5 3 2 7 7 N 1.29022 * 124.91468 * 90.00324 * 6 5 3 8 8 C 1.31784 * 117.12243 * 179.97438 * 7 6 5 9 9 C 1.50704 * 122.74966 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.47101 * 275.02505 * 9 8 7 11 11 C 1.46895 * 110.99995 * 293.95768 * 10 9 8 12 12 C 1.46894 * 110.99749 * 169.99894 * 10 9 8 13 13 H 1.09003 * 109.47378 * 60.00531 * 12 10 9 14 14 C 1.53001 * 109.47483 * 299.99875 * 12 10 9 15 15 C 1.50707 * 109.46856 * 180.02562 * 12 10 9 16 16 H 1.07997 * 120.00136 * 34.90580 * 15 12 10 17 17 C 1.37880 * 119.99890 * 214.90225 * 15 12 10 18 18 N 1.31512 * 119.99842 * 183.89107 * 17 15 12 19 19 Si 1.86797 * 119.99935 * 3.88999 * 17 15 12 20 20 H 1.48505 * 109.47122 * 84.42589 * 19 17 15 21 21 H 1.48506 * 109.47280 * 204.42459 * 19 17 15 22 22 H 1.48497 * 109.47233 * 324.42534 * 19 17 15 23 23 C 1.33641 * 114.50329 * 0.23571 * 8 7 6 24 24 S 1.70982 * 124.91519 * 269.99835 * 6 5 3 25 25 H 1.08999 * 109.47764 * 59.99867 * 1 2 3 26 26 H 1.09003 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46806 * 299.99166 * 1 2 3 28 28 H 0.97004 * 120.00190 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46787 * 60.00622 * 5 3 2 30 30 H 1.08998 * 109.46961 * 300.00216 * 5 3 2 31 31 H 1.08999 * 109.47229 * 155.02956 * 9 8 7 32 32 H 1.08999 * 109.47265 * 35.02563 * 9 8 7 33 33 H 1.09006 * 109.46705 * 296.04146 * 11 10 9 34 34 H 1.09000 * 109.47829 * 56.04305 * 11 10 9 35 35 H 1.08998 * 109.47354 * 176.04807 * 11 10 9 36 36 H 1.08996 * 109.47129 * 306.77035 * 14 12 10 37 37 H 1.09001 * 109.46418 * 66.76491 * 14 12 10 38 38 H 1.09000 * 109.47377 * 186.76688 * 14 12 10 39 39 H 0.97000 * 119.99776 * 180.02562 * 18 17 15 40 40 H 1.08003 * 126.04089 * 179.76705 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1481 2.5881 0.0002 7 7 4.3947 3.2836 1.0585 8 6 4.8302 4.5146 0.8805 9 6 5.1567 5.4376 2.0263 10 7 3.9313 6.1107 2.4773 11 6 3.4132 7.0118 1.4393 12 6 4.1604 6.8334 3.7355 13 1 4.9370 7.5838 3.5873 14 6 4.6044 5.8465 4.8170 15 6 2.8840 7.5091 4.1662 16 1 1.9320 7.0355 3.9774 17 6 2.9317 8.7320 4.8013 18 7 1.8247 9.2859 5.2454 19 14 4.5688 9.6019 5.0310 20 1 4.8963 10.3724 3.8044 21 1 4.4791 10.5282 6.1882 22 1 5.6324 8.5967 5.2828 23 6 4.9535 4.8793 -0.3992 24 16 4.4737 3.5117 -1.4014 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.9500 -0.8401 -0.0004 29 1 4.0088 0.6537 -0.8909 30 1 4.0095 0.6532 0.8891 31 1 5.8807 6.1831 1.6973 32 1 5.5781 4.8602 2.8492 33 1 4.1336 7.8095 1.2581 34 1 3.2526 6.4512 0.5184 35 1 2.4690 7.4436 1.7712 36 1 3.8852 5.0301 4.8813 37 1 5.5862 5.4467 4.5630 38 1 4.6583 6.3597 5.7772 39 1 1.8583 10.1464 5.6919 40 1 5.2892 5.8418 -0.7562 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161769230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:13 Heat of formation + Delta-G solvation = 20.993512 kcal Electronic energy + Delta-G solvation = -21776.729547 eV Core-core repulsion = 18525.928931 eV Total energy + Delta-G solvation = -3250.800616 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.14537 -39.33985 -36.84712 -34.76905 -33.08541 -32.16234 -30.20900 -28.95104 -27.36704 -26.65603 -24.81457 -23.75324 -22.42671 -20.68593 -19.62851 -19.24121 -17.70645 -17.36632 -16.89049 -16.17046 -15.63011 -15.21195 -14.83974 -14.57434 -14.09239 -13.91421 -13.75985 -13.32190 -13.06056 -12.96169 -12.63446 -12.49381 -12.42607 -12.22142 -12.00426 -11.62001 -11.20874 -10.98771 -10.74407 -10.58605 -10.26789 -10.12208 -10.09102 -9.73641 -9.44118 -9.34419 -9.17289 -9.04927 -8.53894 -8.52804 -7.22522 -6.03715 -4.01643 0.84202 1.50887 1.86434 2.49208 2.81895 3.21084 3.28446 3.37074 3.38918 4.03157 4.43202 4.54961 4.77123 5.00288 5.02121 5.10373 5.26369 5.31560 5.35067 5.38712 5.60056 5.61972 5.92011 6.09235 6.14357 6.23441 6.33916 6.38235 6.53774 6.66321 6.74568 6.92679 7.09674 7.20789 7.38134 7.67910 8.00298 8.04703 8.06783 8.18779 8.71987 9.08568 9.59675 11.09481 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.003906 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.536961 B = 7167.534286 C = 7913.434915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.738 5.738 3 C 0.513 3.487 4 O -0.512 6.512 5 C -0.061 4.061 6 C 0.058 3.942 7 N -0.437 5.437 8 C 0.099 3.901 9 C 0.116 3.884 10 N -0.521 5.521 11 C 0.039 3.961 12 C 0.181 3.819 13 H 0.000 1.000 14 C -0.133 4.133 15 C -0.498 4.498 16 H 0.081 0.919 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.872 3.128 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.252 4.252 24 S 0.104 5.896 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.401 0.599 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.009 0.991 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.021 0.979 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.937 -19.646 -14.657 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.392 5.392 3 C 0.296 3.704 4 O -0.386 6.386 5 C -0.105 4.105 6 C -0.221 4.221 7 N -0.151 5.151 8 C -0.034 4.034 9 C -0.014 4.014 10 N -0.246 5.246 11 C -0.109 4.109 12 C 0.075 3.925 13 H 0.018 0.982 14 C -0.191 4.191 15 C -0.536 4.536 16 H 0.099 0.901 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.699 3.301 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.191 1.191 23 C -0.392 4.392 24 S 0.359 5.641 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.235 0.765 29 H 0.131 0.869 30 H 0.142 0.858 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.895 -19.466 -15.016 25.067 hybrid contribution 1.722 1.417 0.692 2.335 sum 6.617 -18.049 -14.323 23.973 Atomic orbital electron populations 1.21539 0.79296 1.02096 1.02685 1.45712 1.07892 1.08402 1.77161 1.20372 0.89445 0.83997 0.76539 1.90830 1.69898 1.30972 1.46880 1.20152 0.92797 0.91239 1.06289 1.25966 1.04616 1.00104 0.91429 1.65954 1.12196 1.06157 1.30832 1.20263 0.98282 0.90774 0.94036 1.20717 0.92974 0.94169 0.93575 1.62082 1.26024 1.32029 1.04471 1.22208 1.01215 0.93869 0.93638 1.19751 0.96476 0.90812 0.85471 0.98224 1.21986 0.97784 0.99998 0.99364 1.20894 0.92729 1.03282 1.36727 0.90079 1.24989 0.95917 0.96979 0.95169 1.69894 1.26827 1.17701 1.39184 0.86947 0.85365 0.79868 0.77887 1.20409 1.21437 1.19053 1.26836 1.12895 1.03698 0.95757 1.83584 1.61016 1.06512 1.13028 0.92209 0.90686 0.91946 0.76545 0.86940 0.85848 0.94352 0.89142 0.97279 0.93700 0.89719 0.92574 0.96016 0.93197 0.92662 0.80886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 59.84 0.64 1.32 16 2 N -0.74 -5.87 5.71 -67.08 -0.38 -6.25 16 3 C 0.51 6.19 7.82 -10.99 -0.09 6.10 16 4 O -0.51 -9.12 16.03 5.55 0.09 -9.03 16 5 C -0.06 -0.59 6.28 -29.03 -0.18 -0.77 16 6 C 0.06 0.82 5.88 -13.46 -0.08 0.75 16 7 N -0.44 -7.72 10.53 -8.05 -0.08 -7.81 16 8 C 0.10 1.74 5.59 -84.22 -0.47 1.27 16 9 C 0.12 2.22 5.22 -4.97 -0.03 2.19 16 10 N -0.52 -11.86 4.61 -237.72 -1.10 -12.96 16 11 C 0.04 0.85 9.00 60.06 0.54 1.39 16 12 C 0.18 4.48 1.70 -68.86 -0.12 4.36 16 13 H 0.00 0.00 5.35 -51.93 -0.28 -0.27 16 14 C -0.13 -3.02 8.76 37.16 0.33 -2.69 16 15 C -0.50 -14.34 7.46 -34.44 -0.26 -14.60 16 16 H 0.08 2.61 8.04 -52.49 -0.42 2.19 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 19 Si 0.87 21.85 26.95 -169.99 -4.58 17.26 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.27 -6.39 6.88 56.52 0.39 -6.00 16 23 C -0.25 -3.77 9.76 29.12 0.28 -3.49 16 24 S 0.10 1.33 23.18 -107.50 -2.49 -1.17 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.40 1.59 8.83 -40.82 -0.36 1.23 16 29 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.67 8.08 -51.93 -0.42 0.26 16 32 H 0.09 1.71 5.97 -51.93 -0.31 1.40 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.04 0.90 6.23 -51.93 -0.32 0.57 16 35 H 0.08 2.07 6.96 -51.93 -0.36 1.70 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.42 6.57 -51.93 -0.34 0.08 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.17 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -36.76 343.26 -7.90 -44.66 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.77 Total: -0.69 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 0.48 Total: -2.19 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.79 Total: -54.02 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.58 Total: 17.26 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.49 Total: -1.17 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.76 -7.90 -44.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161769230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.649 kcal (2) G-P(sol) polarization free energy of solvation -36.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds