Wall clock time and date at job start Tue Mar 31 2020 07:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99957 * 2 1 4 4 C 1.53002 * 109.47495 * 89.99916 * 3 2 1 5 5 C 1.50693 * 109.47298 * 180.02562 * 4 3 2 6 6 N 1.29027 * 124.91534 * 90.30653 * 5 4 3 7 7 C 1.31784 * 117.12400 * 180.22644 * 6 5 4 8 8 C 1.33641 * 114.49781 * 359.48088 * 7 6 5 9 9 S 1.70983 * 124.91700 * 269.99604 * 5 4 3 10 10 C 1.34774 * 120.00262 * 179.97438 * 2 1 3 11 11 O 1.21590 * 120.00126 * 179.97438 * 10 2 1 12 12 N 1.34772 * 119.99955 * 0.02562 * 10 2 1 13 13 C 1.46502 * 120.00329 * 179.97438 * 12 10 2 14 14 C 1.53001 * 109.46982 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46715 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46873 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99838 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99842 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00182 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00163 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46976 * 59.99817 * 20 18 16 22 22 H 1.48503 * 109.47037 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46451 * 299.99962 * 20 18 16 24 24 H 1.08999 * 109.46696 * 89.99979 * 1 2 3 25 25 H 1.09000 * 109.46977 * 210.00072 * 1 2 3 26 26 H 1.09007 * 109.46738 * 330.00011 * 1 2 3 27 27 H 1.08999 * 109.47402 * 330.00129 * 3 2 1 28 28 H 1.08998 * 109.47073 * 209.99869 * 3 2 1 29 29 H 1.09003 * 109.47062 * 59.99580 * 4 3 2 30 30 H 1.09006 * 109.46638 * 300.00219 * 4 3 2 31 31 H 1.08002 * 122.75368 * 179.75456 * 7 6 5 32 32 H 1.08001 * 126.03830 * 180.26907 * 8 7 6 33 33 H 0.97000 * 120.00162 * 359.97438 * 12 10 2 34 34 H 1.08997 * 109.47310 * 300.00463 * 13 12 10 35 35 H 1.09000 * 109.46799 * 60.00001 * 13 12 10 36 36 H 1.08989 * 109.47506 * 299.99767 * 14 13 12 37 37 H 1.08995 * 109.46861 * 60.00640 * 14 13 12 38 38 H 1.09005 * 109.47168 * 300.00143 * 15 14 13 39 39 H 1.09000 * 109.47059 * 60.00128 * 15 14 13 40 40 H 0.97000 * 120.00452 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2054 3.0159 1.4424 6 7 2.6579 4.1842 1.4482 7 6 3.4650 5.2260 1.4426 8 6 4.7657 4.9193 1.4424 9 16 4.9089 3.1632 1.4423 10 6 2.1389 -1.1671 0.0005 11 8 3.3548 -1.1671 0.0001 12 7 1.4651 -2.3343 0.0005 13 6 2.1976 -3.6031 0.0005 14 6 1.2033 -4.7660 0.0012 15 6 1.9684 -6.0910 0.0018 16 6 0.9891 -7.2365 0.0018 17 1 -0.0727 -7.0391 0.0018 18 6 1.4486 -8.5363 0.0018 19 7 2.7416 -8.7767 0.0023 20 14 0.2348 -9.9563 0.0011 21 1 -0.6184 -9.8774 -1.2117 22 1 0.9774 -11.2423 0.0018 23 1 -0.6194 -9.8777 1.2133 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8901 0.5139 27 1 1.6084 2.0284 -0.5138 28 1 3.1499 1.1384 -0.5138 29 1 3.0416 0.9509 1.9564 30 1 1.5000 1.8408 1.9563 31 1 3.1048 6.2442 1.4427 32 1 5.5846 5.6235 1.4423 33 1 0.4951 -2.3344 0.0005 34 1 2.8243 -3.6608 -0.8894 35 1 2.8242 -3.6608 0.8905 36 1 0.5770 -4.7081 0.8913 37 1 0.5764 -4.7084 -0.8886 38 1 2.5950 -6.1492 -0.8882 39 1 2.5950 -6.1483 0.8918 40 1 3.0650 -9.6912 0.0027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178760766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:21 Heat of formation + Delta-G solvation = -15.887599 kcal Electronic energy + Delta-G solvation = -20596.119313 eV Core-core repulsion = 17343.719412 eV Total energy + Delta-G solvation = -3252.399901 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30684 -40.57162 -37.46165 -36.64939 -35.27075 -33.97497 -32.68558 -30.18080 -28.57186 -27.72278 -26.22029 -24.82407 -23.67351 -22.28214 -20.91051 -20.79874 -19.05184 -19.01204 -18.45987 -17.48781 -17.01622 -16.52685 -16.43444 -15.89095 -15.70157 -15.58891 -15.12519 -14.89765 -14.34070 -14.23788 -14.05077 -13.78800 -13.68321 -13.44488 -13.29053 -13.17086 -12.69988 -12.51628 -12.39122 -12.36835 -12.08247 -11.64818 -11.59481 -11.27947 -11.11907 -10.67444 -10.53006 -10.41932 -10.23364 -9.94797 -9.50199 -8.17531 -6.29045 -0.28494 0.40393 0.83332 1.42849 1.46062 1.53658 1.59052 1.86119 2.11453 2.43313 2.95342 3.16005 3.23273 3.89581 4.04983 4.09656 4.18451 4.25391 4.29711 4.39030 4.49755 4.55595 4.57994 4.66643 4.70329 4.91553 4.94806 4.98167 5.01386 5.18698 5.24634 5.47247 5.48159 5.56259 5.73240 5.85925 5.89035 6.24328 6.72919 6.87780 6.96001 7.40308 7.53428 8.94319 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.040145 B = 0.002143 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.303740 B =13060.692904 C =13567.558260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.629 5.629 3 C 0.147 3.853 4 C -0.053 4.053 5 C 0.040 3.960 6 N -0.492 5.492 7 C 0.021 3.979 8 C -0.252 4.252 9 S 0.118 5.882 10 C 0.696 3.304 11 O -0.634 6.634 12 N -0.730 5.730 13 C 0.149 3.851 14 C -0.100 4.100 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.201 0.799 32 H 0.205 0.795 33 H 0.411 0.589 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.068 0.932 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 29.448 2.181 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.365 5.365 3 C 0.021 3.979 4 C -0.095 4.095 5 C -0.237 4.237 6 N -0.207 5.207 7 C -0.129 4.129 8 C -0.391 4.391 9 S 0.371 5.629 10 C 0.397 3.603 11 O -0.516 6.516 12 N -0.387 5.387 13 C 0.024 3.976 14 C -0.138 4.138 15 C -0.014 4.014 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.217 0.783 32 H 0.222 0.778 33 H 0.249 0.751 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.197 28.637 2.184 28.804 hybrid contribution -0.646 -0.147 0.053 0.665 sum -2.843 28.489 2.238 28.718 Atomic orbital electron populations 1.22052 0.76965 1.04768 1.03360 1.47032 1.07996 1.03638 1.77852 1.21222 0.97799 0.83867 0.94966 1.20568 1.00681 0.88962 0.99318 1.26935 0.95197 0.97573 1.04026 1.66317 1.39732 0.98129 1.16530 1.22253 0.88792 0.99580 1.02263 1.27499 1.02516 0.97623 1.11471 1.84505 1.07746 1.03672 1.66932 1.16152 0.84976 0.81392 0.77802 1.90886 1.13697 1.87001 1.59971 1.45194 1.10548 1.03964 1.78954 1.21083 0.94585 0.81435 1.00469 1.21584 0.97483 0.92623 1.02107 1.18940 0.95166 0.92215 0.95081 1.21653 0.93899 0.91842 1.50470 0.91453 1.26039 0.97036 1.02317 0.94846 1.70108 1.14780 1.20986 1.51653 0.85463 0.78594 0.77477 0.79265 1.19013 1.21264 1.19007 0.91108 0.90412 0.88393 0.87834 0.91587 0.90629 0.87567 0.78281 0.77765 0.75112 0.93558 0.93473 0.91323 0.91374 0.98982 0.98941 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.20 127.77 1.30 2.16 16 2 N -0.63 -13.19 2.87 -864.91 -2.49 -15.68 16 3 C 0.15 2.86 5.39 86.38 0.47 3.32 16 4 C -0.05 -1.00 6.12 29.85 0.18 -0.82 16 5 C 0.04 0.79 6.64 88.52 0.59 1.37 16 6 N -0.49 -9.58 10.54 -191.45 -2.02 -11.60 16 7 C 0.02 0.31 11.35 83.66 0.95 1.26 16 8 C -0.25 -3.27 11.37 66.78 0.76 -2.51 16 9 S 0.12 2.09 23.18 -56.49 -1.31 0.78 16 10 C 0.70 20.99 8.28 179.06 1.48 22.48 16 11 O -0.63 -24.89 15.92 -4.00 -0.06 -24.95 16 12 N -0.73 -20.62 5.42 -478.54 -2.59 -23.22 16 13 C 0.15 5.34 5.67 86.38 0.49 5.83 16 14 C -0.10 -3.83 5.27 30.60 0.16 -3.67 16 15 C 0.02 1.23 4.97 29.85 0.15 1.38 16 16 C -0.54 -30.06 9.11 25.60 0.23 -29.82 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 19 N -0.94 -57.21 13.29 21.45 0.28 -56.93 16 20 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.08 0.85 6.36 -2.39 -0.02 0.83 16 26 H 0.10 0.78 8.07 -2.38 -0.02 0.76 16 27 H 0.10 1.57 8.07 -2.39 -0.02 1.55 16 28 H 0.07 1.59 7.42 -2.39 -0.02 1.58 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.20 1.72 8.06 -2.91 -0.02 1.69 16 32 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.41 8.77 6.20 -92.71 -0.58 8.20 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -74.43 353.49 1.52 -72.91 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.46 Total: 11.83 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 7.23 Total: 1.16 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -6.81 Total: -107.42 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.06 Total: -24.95 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.31 Total: 0.78 kcal Total: -74.43 1.52 -72.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178760766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.021 kcal (2) G-P(sol) polarization free energy of solvation -74.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds