Wall clock time and date at job start Tue Mar 31 2020 08:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00023 * 2 1 4 4 C 1.53002 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46831 * 174.99718 * 4 3 2 6 6 N 1.46894 * 109.47143 * 294.99772 * 4 3 2 7 7 C 1.46894 * 111.00442 * 275.00163 * 6 4 3 8 8 C 1.52996 * 109.47462 * 180.02562 * 7 6 4 9 9 C 1.52993 * 109.47404 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47582 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99879 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00588 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00380 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99471 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47125 * 90.00360 * 14 12 10 16 16 H 1.48509 * 109.46863 * 209.99969 * 14 12 10 17 17 H 1.48493 * 109.47344 * 329.99895 * 14 12 10 18 18 C 1.50696 * 109.46922 * 55.00007 * 4 3 2 19 19 C 1.38247 * 119.98658 * 100.00234 * 18 4 3 20 20 C 1.38216 * 120.01497 * 179.97438 * 19 18 4 21 21 C 1.38357 * 119.98603 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38219 * 119.98930 * 359.40143 * 23 21 20 25 25 H 1.09001 * 109.47296 * 60.00081 * 1 2 3 26 26 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46932 * 299.99434 * 1 2 3 28 28 H 1.08999 * 109.47144 * 60.00207 * 3 2 1 29 29 H 1.08999 * 109.46945 * 300.00416 * 3 2 1 30 30 H 1.00902 * 111.00177 * 38.96090 * 6 4 3 31 31 H 1.08996 * 109.47182 * 300.00166 * 7 6 4 32 32 H 1.08998 * 109.47006 * 59.99666 * 7 6 4 33 33 H 1.09005 * 109.47258 * 300.00306 * 8 7 6 34 34 H 1.08998 * 109.47330 * 59.99806 * 8 7 6 35 35 H 1.09005 * 109.47086 * 300.00317 * 9 8 7 36 36 H 1.09005 * 109.47506 * 59.99684 * 9 8 7 37 37 H 0.97001 * 119.99778 * 180.02562 * 13 12 10 38 38 H 1.08003 * 119.99321 * 359.97438 * 19 18 4 39 39 H 1.08002 * 120.00776 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.00661 * 179.71600 * 23 21 20 41 41 H 1.07997 * 119.99445 * 180.32231 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0903 6 7 3.9779 0.5623 1.2543 7 6 4.1208 1.5655 2.3177 8 6 4.5825 0.8811 3.6058 9 6 4.7308 1.9259 4.7136 10 6 5.1861 1.2519 5.9822 11 1 5.3527 0.1849 5.9970 12 6 5.3891 1.9972 7.1243 13 7 5.7860 1.4089 8.2316 14 14 5.1003 3.8426 7.0989 15 1 3.6890 4.1278 7.4625 16 1 6.0055 4.4988 8.0764 17 1 5.3768 4.3682 5.7379 18 6 3.9713 0.3328 -1.1648 19 6 4.4458 0.9294 -2.3181 20 6 4.8463 0.1486 -3.3861 21 6 4.7716 -1.2303 -3.3009 22 17 5.2750 -2.2116 -4.6415 23 6 4.2907 -1.8266 -2.1488 24 6 3.8967 -1.0450 -1.0791 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.3478 -0.1744 1.5344 31 1 4.8582 2.3102 2.0180 32 1 3.1610 2.0529 2.4887 33 1 3.8455 0.1361 3.9058 34 1 5.5424 0.3940 3.4345 35 1 5.4676 2.6712 4.4139 36 1 3.7706 2.4127 4.8848 37 1 5.9284 1.9332 9.0351 38 1 4.5037 2.0058 -2.3847 39 1 5.2173 0.6148 -4.2868 40 1 4.2279 -2.9028 -2.0835 41 1 3.5262 -1.5105 -0.1778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193665732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:34 Heat of formation + Delta-G solvation = -40.496468 kcal Electronic energy + Delta-G solvation = -21178.000791 eV Core-core repulsion = 17890.197311 eV Total energy + Delta-G solvation = -3287.803479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90758 -38.22155 -36.70881 -36.17752 -33.88125 -32.17203 -31.18726 -30.41381 -28.63905 -26.69339 -25.85827 -23.55879 -23.03673 -21.97923 -20.74159 -20.01014 -17.41053 -16.78658 -16.57925 -16.22751 -16.02023 -15.46556 -15.35877 -14.66044 -14.27353 -14.15266 -13.79072 -13.59352 -13.50092 -13.10095 -12.70428 -12.57970 -12.36925 -12.04159 -11.81683 -11.69126 -11.50916 -11.34981 -11.19736 -10.96944 -10.89084 -10.79189 -10.00343 -9.88968 -9.74805 -9.58937 -9.16955 -9.10819 -8.66755 -8.52979 -8.29301 -6.03038 -4.00757 1.04137 1.23362 1.99611 3.29926 3.37551 3.39831 3.40967 3.62502 4.27670 4.45561 4.57050 4.67632 4.76207 4.83510 5.07561 5.10075 5.17675 5.21695 5.23668 5.30417 5.32111 5.42632 5.45584 5.60625 5.65588 5.73555 5.87130 6.09439 6.14444 6.17523 6.42198 6.55455 6.58715 6.70789 6.85962 6.91055 7.17732 7.35136 7.43293 7.53979 7.81247 8.56260 9.02829 9.59470 11.10596 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.019746 B = 0.002818 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.656843 B = 9932.920234 C =10562.697706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.033 3.967 4 C 0.127 3.873 5 H 0.100 0.900 6 N -0.678 5.678 7 C 0.056 3.944 8 C -0.099 4.099 9 C -0.012 4.012 10 C -0.519 4.519 11 H 0.072 0.928 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C -0.055 4.055 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.038 4.038 22 Cl -0.082 7.082 23 C -0.116 4.116 24 C -0.061 4.061 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.350 0.650 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.015 0.985 36 H 0.008 0.992 37 H 0.262 0.738 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 -1.853 -25.511 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C -0.046 4.046 4 C 0.017 3.983 5 H 0.118 0.882 6 N -0.310 5.310 7 C -0.072 4.072 8 C -0.137 4.137 9 C -0.050 4.050 10 C -0.557 4.557 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.055 4.055 19 C -0.126 4.126 20 C -0.135 4.135 21 C -0.065 4.065 22 Cl -0.053 7.053 23 C -0.134 4.134 24 C -0.079 4.079 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.169 0.831 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.553 -2.059 -25.594 26.764 hybrid contribution -1.257 1.350 0.234 1.859 sum -8.810 -0.709 -25.360 26.856 Atomic orbital electron populations 1.22731 0.81003 1.02810 0.99843 1.87863 1.19630 1.27207 1.95354 1.23267 0.95109 0.85466 1.00739 1.20609 0.90409 0.97582 0.89744 0.88246 1.60574 1.54237 1.13459 1.02688 1.22217 0.99087 0.94146 0.91799 1.21432 1.01056 0.98959 0.92254 1.19537 0.96031 0.95016 0.94428 1.21156 1.44975 0.96384 0.93138 0.91003 1.25048 0.94696 0.98428 0.95450 1.69920 1.47292 1.36015 1.01141 0.86768 0.78162 0.86153 0.78107 1.20429 1.21415 1.19036 1.19750 0.97395 0.94286 0.94106 1.20943 0.99190 0.99827 0.92632 1.20907 1.01445 0.91503 0.99622 1.20907 1.03762 0.91691 0.90134 1.98357 1.89946 1.70869 1.46168 1.21070 0.99738 1.00584 0.92045 1.20917 0.96380 0.92936 0.97686 0.94311 0.89537 0.94038 0.92575 0.92936 0.83068 0.91371 0.95793 0.93004 0.91814 0.96632 0.97372 0.92780 0.85462 0.85336 0.85237 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.03 8.50 -35.23 -0.30 -4.33 16 3 C 0.03 0.32 5.60 37.16 0.21 0.53 16 4 C 0.13 1.39 2.65 -68.87 -0.18 1.20 16 5 H 0.10 1.01 7.66 -51.93 -0.40 0.61 16 6 N -0.68 -9.02 5.70 -107.96 -0.62 -9.64 16 7 C 0.06 0.86 5.48 -3.83 -0.02 0.84 16 8 C -0.10 -1.93 5.41 -26.74 -0.14 -2.07 16 9 C -0.01 -0.29 4.04 -27.89 -0.11 -0.40 16 10 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 16 11 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 12 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 13 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 14 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 18 C -0.05 -0.60 4.83 -104.62 -0.51 -1.10 16 19 C -0.11 -1.05 9.67 -39.59 -0.38 -1.43 16 20 C -0.12 -1.14 9.83 -39.55 -0.39 -1.53 16 21 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 22 Cl -0.08 -0.81 28.96 -51.86 -1.50 -2.31 16 23 C -0.12 -1.24 9.83 -39.55 -0.39 -1.63 16 24 C -0.06 -0.69 8.32 -39.59 -0.33 -1.02 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.57 7.36 -51.93 -0.38 0.19 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.35 4.65 7.29 -39.29 -0.29 4.37 16 31 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 32 H 0.02 0.35 7.36 -51.93 -0.38 -0.03 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 36 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.13 0.97 8.04 -52.48 -0.42 0.55 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.14 1.54 7.00 -52.49 -0.37 1.17 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -31.06 352.26 -9.21 -40.27 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.39 Total: 0.30 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -1.82 Total: -19.31 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.16 Total: -36.99 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.30 Total: -4.33 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.06 -9.21 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193665732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.227 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds