Wall clock time and date at job start Tue Mar 31 2020 07:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46724 * 2 1 4 4 C 1.50699 * 109.47107 * 240.00026 * 2 1 3 5 5 O 1.21281 * 120.00038 * 269.30494 * 4 2 1 6 6 N 1.34777 * 120.00029 * 89.30710 * 4 2 1 7 7 C 1.46506 * 119.99893 * 354.89766 * 6 4 2 8 8 C 1.46503 * 120.00147 * 174.90679 * 6 4 2 9 9 C 1.50689 * 109.47248 * 89.99595 * 8 6 4 10 10 H 1.08000 * 120.00499 * 359.97438 * 9 8 6 11 11 C 1.37879 * 120.00077 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99963 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00293 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46929 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.46867 * 119.99706 * 13 11 9 16 16 H 1.48491 * 109.47038 * 239.99567 * 13 11 9 17 17 N 1.46896 * 109.46963 * 119.99655 * 2 1 3 18 18 C 1.46901 * 110.99849 * 178.99066 * 17 2 1 19 19 C 1.46894 * 111.00276 * 302.94549 * 17 2 1 20 20 C 1.50706 * 109.46949 * 169.99994 * 19 17 2 21 21 C 1.33640 * 122.74772 * 95.00289 * 20 19 17 22 22 S 1.76199 * 107.91990 * 179.97438 * 21 20 19 23 23 C 1.70975 * 90.28444 * 0.02562 * 22 21 20 24 24 N 1.29023 * 110.16564 * 359.73325 * 23 22 21 25 25 H 1.08996 * 109.46884 * 307.96308 * 1 2 3 26 26 H 1.08994 * 109.46987 * 187.96001 * 1 2 3 27 27 H 1.09008 * 109.46917 * 67.95953 * 1 2 3 28 28 H 1.09006 * 109.46498 * 91.35940 * 7 6 4 29 29 H 1.09001 * 109.47028 * 211.34738 * 7 6 4 30 30 H 1.08994 * 109.47521 * 331.35834 * 7 6 4 31 31 H 1.08999 * 109.46872 * 209.99919 * 8 6 4 32 32 H 1.09002 * 109.46338 * 329.99461 * 8 6 4 33 33 H 0.97001 * 120.00225 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.47105 * 65.38442 * 18 17 2 35 35 H 1.09002 * 109.47105 * 185.38803 * 18 17 2 36 36 H 1.09006 * 109.47352 * 305.38562 * 18 17 2 37 37 H 1.08996 * 109.47276 * 289.99966 * 19 17 2 38 38 H 1.09000 * 109.47159 * 50.00288 * 19 17 2 39 39 H 1.07995 * 126.03853 * 359.97438 * 21 20 19 40 40 H 1.07998 * 124.91377 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.2465 -1.9037 -1.1968 6 7 2.2437 -0.0197 -2.3683 7 6 1.8801 1.3976 -2.4431 8 6 2.8367 -0.6861 -3.5304 9 6 1.7431 -1.2713 -4.3862 10 1 0.7097 -1.1586 -4.0936 11 6 2.0619 -1.9517 -5.5423 12 7 3.3204 -2.0894 -5.8984 13 14 0.7062 -2.6765 -6.6035 14 1 -0.6134 -2.3851 -5.9881 15 1 0.7642 -2.0747 -7.9599 16 1 0.8904 -4.1464 -6.7060 17 7 2.0196 -0.6924 1.1995 18 6 3.4879 -0.7330 1.2214 19 6 1.4920 -0.0682 2.4200 20 6 1.8089 -0.9402 3.6075 21 6 2.8850 -0.7506 4.3770 22 16 2.8720 -1.9797 5.6395 23 6 1.4214 -2.6266 5.0067 24 7 1.0449 -1.9490 3.9753 25 1 -0.3633 0.6322 0.8102 26 1 -0.3633 -1.0177 0.1423 27 1 -0.3633 0.3857 -0.9526 28 1 2.7358 2.0078 -2.1539 29 1 1.5866 1.6440 -3.4635 30 1 1.0479 1.5954 -1.7677 31 1 3.4060 0.0381 -4.1132 32 1 3.4998 -1.4827 -3.1930 33 1 3.5448 -2.5684 -6.7115 34 1 3.8780 0.2804 1.3171 35 1 3.8222 -1.3326 2.0680 36 1 3.8531 -1.1768 0.2952 37 1 1.9515 0.9109 2.5552 38 1 0.4116 0.0466 2.3315 39 1 3.6307 0.0197 4.2478 40 1 0.8945 -3.4769 5.4138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194414994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:36 Heat of formation + Delta-G solvation = 32.964302 kcal Electronic energy + Delta-G solvation = -22091.982182 eV Core-core repulsion = 18841.700658 eV Total energy + Delta-G solvation = -3250.281524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22960 -39.30547 -36.70756 -34.70447 -32.68966 -31.75329 -30.31578 -28.08008 -27.48780 -25.85028 -25.08185 -24.46554 -23.22796 -21.25588 -19.68210 -18.35793 -18.03980 -16.69351 -16.48099 -15.99353 -15.80091 -15.28244 -14.81731 -14.43607 -14.21927 -13.81335 -13.69781 -13.51136 -13.27878 -12.86569 -12.60673 -12.25459 -12.16458 -12.06816 -11.75299 -11.64902 -11.35969 -11.28949 -11.11256 -11.01637 -10.80636 -10.56396 -10.11892 -9.77688 -9.60726 -9.56688 -9.07734 -8.78328 -8.40794 -8.15538 -7.59235 -6.01258 -4.05400 0.54953 1.22591 1.55123 2.60568 3.32377 3.39694 3.42594 3.46947 3.77959 4.06784 4.25265 4.48188 4.82861 4.95291 5.03104 5.09922 5.26663 5.27617 5.30562 5.34387 5.46017 5.59931 5.63975 5.70926 5.82213 5.88495 5.92394 5.96337 6.18329 6.19772 6.40289 6.93727 7.07108 7.15611 7.45606 7.58872 7.63175 7.95720 8.26960 8.46117 8.95031 9.17206 9.59757 11.06867 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.003219 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.397837 B = 8697.592088 C = 8885.550109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.056 0.944 4 C 0.510 3.490 5 O -0.517 6.517 6 N -0.606 5.606 7 C 0.082 3.918 8 C 0.248 3.752 9 C -0.522 4.522 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.510 5.510 18 C 0.021 3.979 19 C 0.124 3.876 20 C 0.084 3.916 21 C -0.252 4.252 22 S 0.104 5.896 23 C 0.024 3.976 24 N -0.450 5.450 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.021 0.979 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.175 0.825 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 7.748 22.154 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 H 0.074 0.926 4 C 0.294 3.706 5 O -0.392 6.392 6 N -0.339 5.339 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.561 4.561 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.235 5.235 18 C -0.126 4.126 19 C -0.007 4.007 20 C -0.048 4.048 21 C -0.392 4.392 22 S 0.355 5.645 23 C -0.274 4.274 24 N -0.163 5.163 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.192 0.808 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.416 6.108 22.556 23.412 hybrid contribution -0.502 0.900 -1.359 1.705 sum -1.917 7.009 21.197 22.408 Atomic orbital electron populations 1.21822 0.92309 1.03816 1.02044 1.21688 0.97287 0.95589 0.89909 0.92647 1.20012 0.79092 0.87656 0.83800 1.90689 1.50254 1.14282 1.83956 1.48185 1.61769 1.10019 1.13959 1.21669 0.98841 0.82724 1.03001 1.19259 0.93858 0.92921 0.81123 1.21473 0.93411 1.34819 1.06424 0.92390 1.24943 0.95624 0.95969 0.97663 1.69942 1.16577 1.42356 1.24686 0.86444 0.82093 0.79023 0.79885 1.19773 1.21024 1.20881 1.61600 1.09224 1.53048 0.99649 1.22488 0.86735 0.99379 1.04043 1.20673 1.02056 0.92266 0.85670 1.20135 0.91507 0.95226 0.97969 1.26880 1.04732 1.06578 1.01016 1.83980 1.25569 1.24401 1.30502 1.28444 0.98185 1.04301 0.96514 1.66091 1.31718 1.05893 1.12556 0.92048 0.90553 0.91311 0.94013 0.90717 0.92398 0.95062 0.94090 0.92827 0.96029 0.91524 0.90038 0.93204 0.88352 0.80768 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.33 37.16 0.31 -1.69 16 2 C 0.07 1.06 1.62 -68.87 -0.11 0.94 16 3 H 0.06 0.75 6.89 -51.93 -0.36 0.39 16 4 C 0.51 10.87 5.67 -10.99 -0.06 10.81 16 5 O -0.52 -13.56 15.26 5.56 0.08 -13.47 16 6 N -0.61 -13.02 2.86 -182.95 -0.52 -13.54 16 7 C 0.08 1.30 9.79 59.85 0.59 1.89 16 8 C 0.25 6.56 5.13 -5.20 -0.03 6.53 16 9 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 10 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 13 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 N -0.51 -7.93 4.35 -237.73 -1.03 -8.96 16 18 C 0.02 0.32 8.91 60.07 0.54 0.86 16 19 C 0.12 1.50 5.18 -4.98 -0.03 1.48 16 20 C 0.08 1.03 5.57 -84.22 -0.47 0.57 16 21 C -0.25 -2.50 9.92 29.12 0.29 -2.21 16 22 S 0.10 0.87 23.22 -107.50 -2.50 -1.63 16 23 C 0.02 0.24 12.23 51.58 0.63 0.87 16 24 N -0.45 -5.95 10.53 -11.90 -0.13 -6.08 16 25 H 0.06 0.66 6.61 -51.93 -0.34 0.32 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 0.95 7.08 -51.92 -0.37 0.58 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.06 0.76 5.44 -51.93 -0.28 0.48 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.22 7.50 -51.93 -0.39 0.84 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 35 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 36 H 0.08 1.49 6.24 -51.93 -0.32 1.17 16 37 H 0.05 0.50 8.07 -51.93 -0.42 0.08 16 38 H 0.10 1.17 5.91 -51.93 -0.31 0.86 16 39 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -35.45 340.66 -7.64 -43.08 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.63 Total: -1.83 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 1.23 Total: 6.29 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.95 Total: -54.82 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.50 Total: -1.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.45 -7.64 -43.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194414994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.048 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds