Wall clock time and date at job start Tue Mar 31 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21573 * 120.00203 * 0.02562 * 13 12 2 15 15 C 1.47696 * 119.99762 * 180.02562 * 13 12 2 16 16 C 1.40088 * 120.86079 * 359.71586 * 15 13 12 17 17 N 1.31949 * 119.01882 * 179.76467 * 16 15 13 18 18 C 1.32724 * 120.89230 * 0.52763 * 17 16 15 19 19 C 1.48176 * 119.05086 * 179.70230 * 18 17 16 20 20 C 1.39457 * 120.12868 * 179.74648 * 19 18 17 21 21 C 1.37985 * 119.86374 * 179.74821 * 20 19 18 22 22 C 1.38346 * 120.13313 * 0.53082 * 21 20 19 23 23 C 1.38339 * 120.26552 * 359.73804 * 22 21 20 24 24 C 1.37994 * 120.13127 * 359.97438 * 23 22 21 25 25 N 1.32716 * 121.89553 * 359.72608 * 18 17 16 26 26 C 1.31951 * 120.89205 * 359.97438 * 25 18 17 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 32 32 H 1.08001 * 120.49207 * 0.02562 * 16 15 13 33 33 H 1.07998 * 120.06521 * 0.02562 * 20 19 18 34 34 H 1.08000 * 119.93426 * 180.27420 * 21 20 19 35 35 H 1.07994 * 119.87006 * 179.76841 * 22 21 20 36 36 H 1.08001 * 119.93714 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.06365 * 180.02562 * 24 23 22 38 38 H 1.08005 * 120.48778 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8574 1.1614 2.4118 15 6 2.6398 -0.7142 3.5630 16 6 2.9731 -2.0742 3.5218 17 7 3.4143 -2.6586 4.6195 18 6 3.5337 -1.9783 5.7528 19 6 4.0272 -2.6769 6.9628 20 6 4.1664 -1.9825 8.1642 21 6 4.6214 -2.6397 9.2889 22 6 4.9497 -3.9821 9.2237 23 6 4.8191 -4.6748 8.0334 24 6 4.3594 -4.0299 6.9034 25 7 3.2235 -0.6904 5.8336 26 6 2.7809 -0.0327 4.7788 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.7088 1.1611 -3.4845 31 1 2.2490 -1.6316 1.1527 32 1 2.8744 -2.6351 2.6042 33 1 3.9143 -0.9336 8.2152 34 1 4.7254 -2.1041 10.2210 35 1 5.3090 -4.4913 10.1057 36 1 5.0773 -5.7226 7.9885 37 1 4.2574 -4.5719 5.9748 38 1 2.5300 1.0153 4.8521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194629309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:46 Heat of formation + Delta-G solvation = 16.834349 kcal Electronic energy + Delta-G solvation = -22046.580329 eV Core-core repulsion = 18660.155407 eV Total energy + Delta-G solvation = -3386.424922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.38728 -40.50763 -39.65054 -36.83257 -35.17857 -34.54856 -34.02005 -31.85117 -31.66250 -30.34756 -27.35501 -26.43511 -25.84434 -23.59150 -23.15450 -22.63823 -21.44603 -19.66533 -18.85521 -18.73090 -17.71882 -17.05630 -17.01652 -16.47389 -16.23386 -15.77098 -15.60445 -15.50664 -15.16115 -14.72783 -14.53298 -14.35664 -14.21699 -13.78860 -13.63908 -13.01323 -12.92204 -12.88015 -12.77224 -12.27405 -12.24207 -12.13413 -12.11457 -11.99012 -11.20991 -11.12769 -10.97388 -10.60841 -10.49605 -9.90494 -9.87312 -9.54104 -8.18174 -6.35555 -1.03254 -0.13981 0.45518 0.49422 1.46442 1.46747 1.57269 1.82780 2.20856 2.46047 2.55946 2.57889 2.87525 3.01069 3.13018 3.31658 3.62925 3.89087 3.89148 4.07168 4.14712 4.31036 4.51672 4.55922 4.72254 4.74204 4.90651 4.91765 5.04755 5.07131 5.16413 5.38578 5.49072 5.53834 5.54225 5.59036 5.64605 5.70684 5.85519 6.02523 6.07359 6.69235 6.74260 6.81084 7.24827 7.40715 8.88153 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.030604 B = 0.002775 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.707702 B =10088.532332 C =10790.628186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.004 0.996 4 C -0.547 4.547 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.279 1.279 10 H -0.258 1.258 11 H -0.285 1.285 12 N -0.693 5.693 13 C 0.557 3.443 14 O -0.585 6.585 15 C -0.248 4.248 16 C 0.198 3.802 17 N -0.520 5.520 18 C 0.365 3.635 19 C -0.082 4.082 20 C -0.079 4.079 21 C -0.133 4.133 22 C -0.090 4.090 23 C -0.133 4.133 24 C -0.077 4.077 25 N -0.523 5.523 26 C 0.209 3.791 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.014 0.986 30 H 0.266 0.734 31 H 0.405 0.595 32 H 0.201 0.799 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 -12.317 21.362 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.205 1.205 10 H -0.182 1.182 11 H -0.211 1.211 12 N -0.341 5.341 13 C 0.343 3.657 14 O -0.467 6.467 15 C -0.256 4.256 16 C 0.030 3.970 17 N -0.233 5.233 18 C 0.103 3.897 19 C -0.084 4.084 20 C -0.099 4.099 21 C -0.151 4.151 22 C -0.109 4.109 23 C -0.151 4.151 24 C -0.097 4.097 25 N -0.236 5.236 26 C 0.042 3.958 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.242 0.758 32 H 0.218 0.782 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.153 0.847 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.589 -11.836 22.006 26.114 hybrid contribution -0.305 0.389 -2.081 2.139 sum 7.284 -11.447 19.925 24.106 Atomic orbital electron populations 1.21920 0.97992 0.99722 0.99823 1.18442 0.91315 0.92140 0.81318 0.97761 1.21527 1.32715 1.13732 0.90577 0.90538 1.25781 0.94829 0.95585 1.02292 1.70046 1.36817 1.23893 1.24668 0.85349 0.77687 0.79282 0.78050 1.20503 1.18232 1.21076 1.46193 1.64296 1.14231 1.09389 1.18112 0.77976 0.86224 0.83403 1.90735 1.53140 1.17233 1.85562 1.21757 1.09118 0.97842 0.96844 1.23861 0.85640 0.90186 0.97299 1.68456 1.16259 1.39271 0.99316 1.22040 0.88827 0.86724 0.92105 1.18268 1.05456 0.94429 0.90216 1.21478 0.96214 1.00675 0.91530 1.21465 0.99546 0.95481 0.98613 1.21799 0.96060 0.94255 0.98760 1.21480 0.99864 1.01567 0.92157 1.21489 0.95493 0.92565 1.00136 1.68516 1.14502 1.09274 1.31353 1.23598 0.85645 1.00910 0.85643 0.91269 0.93867 0.96713 0.92509 0.75845 0.78215 0.84977 0.82985 0.82511 0.82877 0.84662 0.79485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.70 9.26 71.98 0.67 -6.03 16 2 C 0.27 13.61 2.56 44.24 0.11 13.73 16 3 H 0.00 0.27 7.58 -2.38 -0.02 0.25 16 4 C -0.55 -27.99 8.73 25.60 0.22 -27.77 16 5 H 0.08 3.61 7.74 -2.91 -0.02 3.58 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -51.49 11.32 21.45 0.24 -51.25 16 8 Si 0.97 41.03 29.54 68.60 2.03 43.05 16 9 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 11 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 12 N -0.69 -27.64 5.03 -449.12 -2.26 -29.90 16 13 C 0.56 21.99 7.75 86.74 0.67 22.66 16 14 O -0.58 -27.82 16.10 -3.95 -0.06 -27.88 16 15 C -0.25 -7.72 5.91 -19.88 -0.12 -7.84 16 16 C 0.20 5.20 10.80 85.12 0.92 6.12 16 17 N -0.52 -13.95 9.42 -188.17 -1.77 -15.73 16 18 C 0.37 10.03 7.55 137.42 1.04 11.07 16 19 C -0.08 -1.88 5.88 -20.05 -0.12 -2.00 16 20 C -0.08 -1.54 9.56 22.50 0.22 -1.33 16 21 C -0.13 -1.81 10.03 22.24 0.22 -1.58 16 22 C -0.09 -1.01 10.04 22.32 0.22 -0.79 16 23 C -0.13 -1.76 10.03 22.24 0.22 -1.54 16 24 C -0.08 -1.47 9.56 22.50 0.22 -1.25 16 25 N -0.52 -14.92 9.42 -188.16 -1.77 -16.69 16 26 C 0.21 6.22 10.87 85.13 0.93 7.14 16 27 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.41 13.13 6.66 -92.71 -0.62 12.51 16 32 H 0.20 4.06 6.52 -2.91 -0.02 4.04 16 33 H 0.13 2.63 7.50 -2.91 -0.02 2.61 16 34 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 35 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 37 H 0.14 2.55 7.50 -2.91 -0.02 2.53 16 38 H 0.19 5.25 7.74 -2.91 -0.02 5.23 16 Total: -1.00 -67.52 332.06 2.76 -64.76 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.48 Total: 21.78 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 5.87 Total: 11.85 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -5.56 Total: -113.56 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.06 Total: -27.88 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -67.52 2.76 -64.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194629309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.592 kcal (2) G-P(sol) polarization free energy of solvation -67.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds