Wall clock time and date at job start Tue Mar 31 2020 07:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47240 * 2 1 4 4 C 1.36931 * 120.00035 * 84.60963 * 3 2 1 5 5 H 1.08006 * 120.00547 * 37.60061 * 4 3 2 6 6 C 1.38818 * 120.00245 * 217.88454 * 4 3 2 7 7 N 1.31619 * 119.99380 * 20.37560 * 6 4 3 8 8 Si 1.86795 * 120.00352 * 200.37809 * 6 4 3 9 9 H 1.48507 * 109.46927 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47187 * 119.99314 * 8 6 4 11 11 H 1.48499 * 109.47138 * 239.99371 * 8 6 4 12 12 C 1.46501 * 119.99838 * 264.60674 * 3 2 1 13 13 C 1.50702 * 109.47017 * 269.99895 * 12 3 2 14 14 C 1.38281 * 119.93800 * 269.72597 * 13 12 3 15 15 C 1.38152 * 120.07085 * 179.72289 * 14 13 12 16 16 C 1.38709 * 119.96241 * 0.55716 * 15 14 13 17 17 O 1.35924 * 120.06162 * 179.70350 * 16 15 14 18 18 C 1.42895 * 117.00121 * 354.89743 * 17 16 15 19 19 C 1.53005 * 109.46876 * 84.23558 * 18 17 16 20 20 C 1.53000 * 109.46969 * 204.23634 * 18 17 16 21 21 C 1.38821 * 119.87491 * 359.71438 * 16 15 14 22 22 Cl 1.73595 * 120.03303 * 179.97438 * 21 16 15 23 23 C 1.38247 * 119.93833 * 90.00390 * 13 12 3 24 24 H 1.08997 * 109.46912 * 60.00021 * 1 2 3 25 25 H 1.08995 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46685 * 299.99896 * 1 2 3 27 27 H 1.09001 * 109.46926 * 239.99721 * 2 1 3 28 28 H 1.08999 * 109.47384 * 120.00202 * 2 1 3 29 29 H 0.96998 * 119.99536 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47140 * 29.99841 * 12 3 2 31 31 H 1.09007 * 109.46910 * 150.00324 * 12 3 2 32 32 H 1.08001 * 119.96392 * 0.02562 * 14 13 12 33 33 H 1.08004 * 120.01882 * 180.27548 * 15 14 13 34 34 H 1.08998 * 109.46900 * 324.23482 * 18 17 16 35 35 H 1.09001 * 109.46523 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.47213 * 299.99947 * 19 18 17 37 37 H 1.08994 * 109.46945 * 60.00265 * 19 18 17 38 38 H 1.08995 * 109.47598 * 60.00136 * 20 18 17 39 39 H 1.09004 * 109.47009 * 180.02562 * 20 18 17 40 40 H 1.08998 * 109.47185 * 299.99674 * 20 18 17 41 41 H 1.07994 * 119.98322 * 359.97248 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1416 2.0638 1.1806 5 1 2.4791 1.5503 2.0688 6 6 1.8270 3.4147 1.2374 7 7 1.0520 3.9491 0.3176 8 14 2.5038 4.4740 2.6191 9 1 3.3419 3.6397 3.5175 10 1 3.3290 5.5675 2.0458 11 1 1.3782 5.0569 3.3928 12 6 2.3750 2.0320 -1.2631 13 6 3.8309 1.7836 -1.5627 14 6 4.7899 2.6701 -1.1082 15 6 6.1259 2.4421 -1.3763 16 6 6.5046 1.3288 -2.1121 17 8 7.8179 1.1057 -2.3822 18 6 8.7444 2.1147 -1.9754 19 6 9.1165 1.9029 -0.5064 20 6 10.0047 2.0277 -2.8385 21 6 5.5397 0.4431 -2.5722 22 17 6.0091 -0.9511 -3.4939 23 6 4.2047 0.6730 -2.2962 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.8325 4.8931 0.3571 30 1 1.7637 1.6233 -2.0677 31 1 2.1986 3.1046 -1.1816 32 1 4.4947 3.5391 -0.5389 33 1 6.8746 3.1326 -1.0172 34 1 8.2881 3.0971 -2.0966 35 1 9.8236 2.6723 -0.1963 36 1 8.2187 1.9649 0.1084 37 1 9.5728 0.9206 -0.3852 38 1 9.7396 2.1785 -3.8849 39 1 10.7116 2.7970 -2.5279 40 1 10.4610 1.0452 -2.7172 41 1 3.4534 -0.0156 -2.6535 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275342037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:52 Heat of formation + Delta-G solvation = -11.521105 kcal Electronic energy + Delta-G solvation = -22218.094898 eV Core-core repulsion = 18931.547885 eV Total energy + Delta-G solvation = -3286.547013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.04384 -37.81488 -36.19066 -35.46125 -33.19159 -31.84167 -30.65863 -30.22402 -28.32311 -27.38358 -25.44128 -23.68269 -22.87681 -21.64148 -20.54786 -19.93654 -18.12460 -16.81805 -15.86694 -15.39945 -15.33358 -14.68517 -14.30056 -14.09353 -14.06973 -13.80999 -13.28184 -13.25627 -12.80789 -12.64272 -12.40787 -12.32020 -12.03174 -11.91913 -11.31412 -11.30240 -11.19287 -11.10176 -11.02108 -10.79996 -10.58557 -10.57737 -10.37405 -10.31076 -9.99467 -9.95892 -9.76339 -8.57167 -8.40753 -7.59186 -6.63578 -5.85708 -3.41538 1.65555 1.83029 2.55888 3.28576 3.29690 3.39050 3.42050 4.12026 4.44217 4.69619 4.82460 4.97500 5.13487 5.26148 5.33891 5.40086 5.54894 5.60208 5.61530 5.67631 5.76309 5.87050 5.97600 5.99200 6.09227 6.12385 6.17067 6.42539 6.51206 6.58659 6.61811 6.70056 6.81889 6.99984 7.16087 7.24779 7.30888 7.59197 7.64535 7.78033 8.47056 9.12450 9.74288 10.33812 11.14921 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.005260 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.743578 B = 5322.259988 C = 6771.408834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 N -0.576 5.576 4 C -0.251 4.251 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.885 5.885 8 Si 0.890 3.110 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.178 3.822 13 C -0.092 4.092 14 C -0.055 4.055 15 C -0.202 4.202 16 C 0.116 3.884 17 O -0.305 6.305 18 C 0.077 3.923 19 C -0.181 4.181 20 C -0.146 4.146 21 C -0.069 4.069 22 Cl -0.081 7.081 23 C -0.077 4.077 24 H 0.044 0.956 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.255 0.745 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.424 -3.285 -6.049 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 N -0.296 5.296 4 C -0.381 4.381 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.216 1.216 12 C 0.052 3.948 13 C -0.096 4.096 14 C -0.074 4.074 15 C -0.221 4.221 16 C 0.070 3.930 17 O -0.219 6.219 18 C 0.021 3.979 19 C -0.239 4.239 20 C -0.203 4.203 21 C -0.096 4.096 22 Cl -0.052 7.052 23 C -0.096 4.096 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.123 0.877 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.462 -3.420 -6.216 14.340 hybrid contribution 0.381 0.700 0.867 1.177 sum 12.844 -2.720 -5.349 14.176 Atomic orbital electron populations 1.22235 0.99418 0.98299 1.02029 1.20878 0.92074 0.87222 0.98154 1.43786 1.72701 1.10088 1.03022 1.19072 1.38054 0.92171 0.88813 0.92247 1.25155 0.97049 0.98970 0.97596 1.69981 1.34403 1.12389 1.35931 0.86424 0.78816 0.80588 0.82241 1.20031 1.21344 1.21557 1.19988 0.85259 1.02479 0.87096 1.21224 1.00570 0.92963 0.94799 1.21036 0.91072 0.99165 0.96160 1.21200 0.97837 0.98584 1.04469 1.18464 0.82968 0.94495 0.97061 1.86139 1.13340 1.45137 1.77333 1.22373 0.89506 0.91379 0.94684 1.22394 1.02720 1.02875 0.95863 1.21824 0.95509 1.02964 1.00019 1.20128 0.92855 0.92021 1.04581 1.98311 1.92727 1.41326 1.72830 1.20841 0.92408 0.97909 0.98488 0.93702 0.95137 0.92645 0.94672 0.94397 0.93513 0.94614 0.87688 0.85344 0.85422 0.90965 0.91293 0.91458 0.91572 0.91745 0.90782 0.91597 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.21 37.16 0.38 -2.80 16 2 C 0.14 2.97 6.40 -4.04 -0.03 2.94 16 3 N -0.58 -13.68 2.42 -174.61 -0.42 -14.10 16 4 C -0.25 -6.53 9.46 -15.06 -0.14 -6.68 16 5 H 0.06 1.59 7.91 -52.48 -0.42 1.17 16 6 C 0.01 0.33 4.98 -17.43 -0.09 0.24 16 7 N -0.88 -24.01 11.43 55.49 0.63 -23.37 16 8 Si 0.89 20.58 29.60 -169.99 -5.03 15.55 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 C 0.18 3.95 5.39 -5.19 -0.03 3.92 16 13 C -0.09 -1.82 5.46 -104.60 -0.57 -2.39 16 14 C -0.06 -1.05 9.69 -39.60 -0.38 -1.43 16 15 C -0.20 -3.35 8.21 -39.44 -0.32 -3.68 16 16 C 0.12 1.94 6.59 -39.19 -0.26 1.69 16 17 O -0.31 -4.62 9.26 -19.50 -0.18 -4.80 16 18 C 0.08 0.89 2.85 -26.73 -0.08 0.82 16 19 C -0.18 -1.95 9.16 37.16 0.34 -1.61 16 20 C -0.15 -1.33 9.56 37.16 0.36 -0.98 16 21 C -0.07 -1.19 6.33 -39.36 -0.25 -1.44 16 22 Cl -0.08 -1.26 28.50 -51.86 -1.48 -2.74 16 23 C -0.08 -1.39 9.48 -39.57 -0.38 -1.76 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 28 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.04 0.76 8.01 -51.93 -0.42 0.34 16 31 H 0.11 2.62 5.44 -51.93 -0.28 2.33 16 32 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 33 H 0.13 1.81 5.41 -52.48 -0.28 1.52 16 34 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.83 6.85 -51.93 -0.36 0.47 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -27.50 351.94 -8.90 -36.40 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.28 Total: 0.90 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.45 Total: -13.14 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.21 Total: -37.47 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.18 Total: -4.80 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.48 Total: -2.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.50 -8.90 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275342037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.880 kcal (2) G-P(sol) polarization free energy of solvation -27.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds