Wall clock time and date at job start Tue Mar 31 2020 07:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47240 * 2 1 4 4 C 1.36931 * 120.00035 * 84.60963 * 3 2 1 5 5 H 1.08006 * 120.00547 * 37.60061 * 4 3 2 6 6 C 1.38818 * 120.00245 * 217.88454 * 4 3 2 7 7 N 1.31619 * 119.99380 * 20.37560 * 6 4 3 8 8 Si 1.86795 * 120.00352 * 200.37809 * 6 4 3 9 9 H 1.48507 * 109.46927 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47187 * 119.99314 * 8 6 4 11 11 H 1.48499 * 109.47138 * 239.99371 * 8 6 4 12 12 C 1.46501 * 119.99838 * 264.60674 * 3 2 1 13 13 C 1.50702 * 109.47017 * 269.99895 * 12 3 2 14 14 C 1.38281 * 119.93800 * 269.72597 * 13 12 3 15 15 C 1.38152 * 120.07085 * 179.72289 * 14 13 12 16 16 C 1.38709 * 119.96241 * 0.55716 * 15 14 13 17 17 O 1.35924 * 120.06162 * 179.70350 * 16 15 14 18 18 C 1.42895 * 117.00121 * 354.89743 * 17 16 15 19 19 C 1.53005 * 109.46876 * 84.23558 * 18 17 16 20 20 C 1.53000 * 109.46969 * 204.23634 * 18 17 16 21 21 C 1.38821 * 119.87491 * 359.71438 * 16 15 14 22 22 Cl 1.73595 * 120.03303 * 179.97438 * 21 16 15 23 23 C 1.38247 * 119.93833 * 90.00390 * 13 12 3 24 24 H 1.08997 * 109.46912 * 60.00021 * 1 2 3 25 25 H 1.08995 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46685 * 299.99896 * 1 2 3 27 27 H 1.09001 * 109.46926 * 239.99721 * 2 1 3 28 28 H 1.08999 * 109.47384 * 120.00202 * 2 1 3 29 29 H 0.96998 * 119.99536 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47140 * 29.99841 * 12 3 2 31 31 H 1.09007 * 109.46910 * 150.00324 * 12 3 2 32 32 H 1.08001 * 119.96392 * 0.02562 * 14 13 12 33 33 H 1.08004 * 120.01882 * 180.27548 * 15 14 13 34 34 H 1.08998 * 109.46900 * 324.23482 * 18 17 16 35 35 H 1.09001 * 109.46523 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.47213 * 299.99947 * 19 18 17 37 37 H 1.08994 * 109.46945 * 60.00265 * 19 18 17 38 38 H 1.08995 * 109.47598 * 60.00136 * 20 18 17 39 39 H 1.09004 * 109.47009 * 180.02562 * 20 18 17 40 40 H 1.08998 * 109.47185 * 299.99674 * 20 18 17 41 41 H 1.07994 * 119.98322 * 359.97248 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1416 2.0638 1.1806 5 1 2.4791 1.5503 2.0688 6 6 1.8270 3.4147 1.2374 7 7 1.0520 3.9491 0.3176 8 14 2.5038 4.4740 2.6191 9 1 3.3419 3.6397 3.5175 10 1 3.3290 5.5675 2.0458 11 1 1.3782 5.0569 3.3928 12 6 2.3750 2.0320 -1.2631 13 6 3.8309 1.7836 -1.5627 14 6 4.7899 2.6701 -1.1082 15 6 6.1259 2.4421 -1.3763 16 6 6.5046 1.3288 -2.1121 17 8 7.8179 1.1057 -2.3822 18 6 8.7444 2.1147 -1.9754 19 6 9.1165 1.9029 -0.5064 20 6 10.0047 2.0277 -2.8385 21 6 5.5397 0.4431 -2.5722 22 17 6.0091 -0.9511 -3.4939 23 6 4.2047 0.6730 -2.2962 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.8325 4.8931 0.3571 30 1 1.7637 1.6233 -2.0677 31 1 2.1986 3.1046 -1.1816 32 1 4.4947 3.5391 -0.5389 33 1 6.8746 3.1326 -1.0172 34 1 8.2881 3.0971 -2.0966 35 1 9.8236 2.6723 -0.1963 36 1 8.2187 1.9649 0.1084 37 1 9.5728 0.9206 -0.3852 38 1 9.7396 2.1785 -3.8849 39 1 10.7116 2.7970 -2.5279 40 1 10.4610 1.0452 -2.7172 41 1 3.4534 -0.0156 -2.6535 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275342037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:52 Heat of formation + Delta-G solvation = -23.388215 kcal Electronic energy + Delta-G solvation = -22218.609494 eV Core-core repulsion = 18931.547885 eV Total energy + Delta-G solvation = -3287.061610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29887 -39.17390 -37.63006 -37.01647 -34.18437 -33.74627 -32.13979 -31.63695 -29.99926 -28.19591 -27.14564 -25.34591 -24.21865 -23.05251 -21.88940 -21.46904 -19.33833 -18.64731 -17.19697 -16.86015 -16.49682 -16.41559 -15.80089 -15.61008 -15.54589 -15.19214 -14.76141 -14.46837 -14.25204 -13.89392 -13.67945 -13.33497 -13.18406 -13.12514 -12.92725 -12.86992 -12.72320 -12.54980 -12.37348 -12.29739 -12.17574 -11.99120 -11.80060 -11.70038 -11.63918 -11.52497 -11.42686 -10.53618 -9.78461 -8.97284 -8.54592 -7.81435 -5.41470 0.25059 0.42942 1.22482 1.43371 1.48690 1.57341 2.19203 2.50887 2.70891 3.27630 3.79953 3.82662 3.87225 3.95166 4.08938 4.15961 4.28134 4.40435 4.47514 4.48207 4.66330 4.70360 4.81107 4.81894 4.87999 4.90035 4.93539 4.99399 5.10459 5.13994 5.24690 5.27208 5.32594 5.34405 5.55829 5.62832 5.75185 5.79551 5.90254 6.40766 6.51150 7.19106 7.86703 8.41151 9.15901 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.005260 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.743578 B = 5322.259988 C = 6771.408834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.138 3.862 3 N -0.591 5.591 4 C -0.258 4.258 5 H 0.048 0.952 6 C -0.025 4.025 7 N -0.911 5.911 8 Si 0.943 3.057 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.293 1.293 12 C 0.186 3.814 13 C -0.109 4.109 14 C -0.068 4.068 15 C -0.195 4.195 16 C 0.124 3.876 17 O -0.312 6.312 18 C 0.065 3.935 19 C -0.178 4.178 20 C -0.141 4.141 21 C -0.078 4.078 22 Cl -0.064 7.064 23 C -0.074 4.074 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.252 0.748 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.152 0.848 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.534 -3.865 -6.426 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 N -0.311 5.311 4 C -0.388 4.388 5 H 0.066 0.934 6 C -0.223 4.223 7 N -0.555 5.555 8 Si 0.772 3.228 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.220 1.220 12 C 0.060 3.940 13 C -0.112 4.112 14 C -0.087 4.087 15 C -0.213 4.213 16 C 0.077 3.923 17 O -0.227 6.227 18 C 0.010 3.990 19 C -0.236 4.236 20 C -0.198 4.198 21 C -0.106 4.106 22 Cl -0.036 7.036 23 C -0.093 4.093 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.169 0.831 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.595 -4.017 -6.603 16.515 hybrid contribution -0.159 0.805 0.917 1.231 sum 14.436 -3.211 -5.685 15.844 Atomic orbital electron populations 1.22096 0.98668 0.99953 1.00088 1.21000 0.92642 0.86032 0.99040 1.43975 1.73460 1.10920 1.02767 1.19138 1.37630 0.92633 0.89410 0.93420 1.25668 0.97391 0.99767 0.99449 1.70090 1.35676 1.12291 1.37465 0.85596 0.78008 0.79192 0.80030 1.19720 1.20940 1.21997 1.19756 0.87092 1.00555 0.86617 1.20910 0.99136 0.94401 0.96746 1.20969 0.92212 0.98822 0.96678 1.21328 0.97188 0.98958 1.03860 1.18547 0.83888 0.93859 0.95958 1.86157 1.12720 1.46604 1.77205 1.22764 0.89722 0.90750 0.95813 1.22385 1.02485 1.03843 0.94857 1.21847 0.94590 1.03952 0.99449 1.20223 0.92801 0.92767 1.04770 1.98313 1.92547 1.40363 1.72343 1.20830 0.93174 0.97333 0.97955 0.94719 0.91631 0.95359 0.92627 0.94527 0.93844 0.94323 0.90619 0.86979 0.83052 0.90468 0.88690 0.93285 0.91651 0.91925 0.88167 0.91597 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.82 10.21 71.98 0.73 -5.08 16 2 C 0.14 5.69 6.40 86.38 0.55 6.24 16 3 N -0.59 -28.41 2.42 -706.33 -1.71 -30.12 16 4 C -0.26 -13.65 9.46 84.04 0.79 -12.86 16 5 H 0.05 2.60 7.91 -2.91 -0.02 2.58 16 6 C -0.02 -1.32 4.98 84.86 0.42 -0.90 16 7 N -0.91 -50.78 11.43 21.65 0.25 -50.53 16 8 Si 0.94 42.94 29.60 68.60 2.03 44.97 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 C 0.19 8.42 5.39 85.63 0.46 8.88 16 13 C -0.11 -4.32 5.46 -19.85 -0.11 -4.42 16 14 C -0.07 -2.58 9.69 22.26 0.22 -2.37 16 15 C -0.19 -6.23 8.21 22.36 0.18 -6.05 16 16 C 0.12 3.96 6.59 22.52 0.15 4.11 16 17 O -0.31 -8.77 9.26 -92.69 -0.86 -9.63 16 18 C 0.06 1.33 2.85 30.60 0.09 1.42 16 19 C -0.18 -3.37 9.16 71.98 0.66 -2.71 16 20 C -0.14 -2.14 9.56 71.98 0.69 -1.45 16 21 C -0.08 -2.60 6.33 22.41 0.14 -2.46 16 22 Cl -0.06 -1.90 28.50 -2.72 -0.08 -1.98 16 23 C -0.07 -2.59 9.48 22.28 0.21 -2.37 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 28 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 29 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 30 H 0.04 1.67 8.01 -2.39 -0.02 1.65 16 31 H 0.08 3.92 5.44 -2.38 -0.01 3.91 16 32 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.15 4.01 5.41 -2.91 -0.02 4.00 16 34 H 0.08 1.52 6.34 -2.39 -0.02 1.51 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.11 6.85 -2.39 -0.02 1.09 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -59.08 351.94 5.83 -53.24 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.01 Total: 14.08 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 5.19 Total: -20.02 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.46 Total: -80.65 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.86 Total: -9.63 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -59.08 5.83 -53.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275342037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.855 kcal (2) G-P(sol) polarization free energy of solvation -59.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds