Wall clock time and date at job start Tue Mar 31 2020 07:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47524 * 2 1 4 4 C 1.46904 * 110.99865 * 297.74278 * 3 2 1 5 5 C 1.50702 * 109.46944 * 287.93766 * 4 3 2 6 6 H 1.08000 * 119.99663 * 4.03022 * 5 4 3 7 7 C 1.37872 * 120.00122 * 184.03877 * 5 4 3 8 8 N 1.31519 * 120.00047 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00200 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47181 * 89.99384 * 9 7 5 11 11 H 1.48497 * 109.47613 * 209.99324 * 9 7 5 12 12 H 1.48502 * 109.46913 * 329.99606 * 9 7 5 13 13 C 1.46907 * 111.00340 * 61.69089 * 3 2 1 14 14 C 1.52998 * 109.46578 * 76.86610 * 13 3 2 15 15 H 1.08998 * 109.47475 * 53.13576 * 14 13 3 16 16 O 1.42901 * 109.47495 * 293.12889 * 14 13 3 17 17 C 1.42902 * 113.99940 * 149.99957 * 16 14 13 18 18 C 1.50707 * 109.46905 * 173.13189 * 14 13 3 19 19 C 1.38239 * 119.98503 * 265.00136 * 18 14 13 20 20 C 1.38219 * 120.01015 * 180.02562 * 19 18 14 21 21 C 1.38351 * 119.98877 * 0.26407 * 20 19 18 22 22 Cl 1.73598 * 120.01467 * 179.69804 * 21 20 19 23 23 C 1.38352 * 119.96974 * 359.45690 * 21 20 19 24 24 C 1.38213 * 119.98798 * 0.56040 * 23 21 20 25 25 H 1.09007 * 109.47173 * 302.98964 * 1 2 3 26 26 H 1.08995 * 109.46641 * 62.98330 * 1 2 3 27 27 H 1.08992 * 109.47391 * 182.98797 * 1 2 3 28 28 H 1.08998 * 109.47357 * 239.99482 * 2 1 3 29 29 H 1.09006 * 109.46805 * 119.99237 * 2 1 3 30 30 H 1.09002 * 109.46990 * 47.93306 * 4 3 2 31 31 H 1.08993 * 109.47368 * 167.93525 * 4 3 2 32 32 H 0.96995 * 120.00006 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47237 * 316.87218 * 13 3 2 34 34 H 1.08992 * 109.47196 * 196.86783 * 13 3 2 35 35 H 1.09000 * 109.47071 * 60.00404 * 17 16 14 36 36 H 1.08999 * 109.47024 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47044 * 300.00814 * 17 16 14 38 38 H 1.08000 * 119.99861 * 359.97438 * 19 18 14 39 39 H 1.08000 * 120.00416 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.00667 * 180.25546 * 23 21 20 41 41 H 1.08001 * 119.99647 * 179.71695 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5934 2.0941 -1.2138 5 6 2.3705 1.5768 -2.3969 6 1 3.0600 0.7550 -2.2724 7 6 2.2013 2.1529 -3.6380 8 7 1.3613 3.1535 -3.7896 9 14 3.1651 1.5123 -5.1043 10 1 2.3911 0.4357 -5.7733 11 1 3.4020 2.6208 -6.0636 12 1 4.4682 0.9708 -4.6418 13 6 1.5821 2.0982 1.2074 14 6 2.4417 1.6634 2.3961 15 1 3.4957 1.7853 2.1463 16 8 2.1791 0.2915 2.6975 17 6 3.2945 -0.4043 3.2578 18 6 2.1082 2.5138 3.5948 19 6 2.8661 3.6343 3.8795 20 6 2.5609 4.4142 4.9791 21 6 1.5001 4.0702 5.7979 22 17 1.1212 5.0449 7.1836 23 6 0.7384 2.9520 5.5092 24 6 1.0447 2.1726 4.4096 25 1 -0.3634 0.5596 0.8620 26 1 -0.3632 0.4668 -0.9155 27 1 -0.3634 -1.0262 0.0536 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.5287 1.9268 -1.3773 31 1 1.7795 3.1614 -1.0954 32 1 1.2420 3.5585 -4.6629 33 1 0.5372 1.8632 1.4096 34 1 1.6901 3.1719 1.0543 35 1 3.5932 0.0779 4.1886 36 1 3.0144 -1.4386 3.4577 37 1 4.1267 -0.3830 2.5542 38 1 3.6973 3.8999 3.2432 39 1 3.1534 5.2893 5.2016 40 1 -0.0923 2.6853 6.1457 41 1 0.4530 1.2970 4.1866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283121215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:43 Heat of formation + Delta-G solvation = -39.347070 kcal Electronic energy + Delta-G solvation = -22001.809758 eV Core-core repulsion = 18714.056121 eV Total energy + Delta-G solvation = -3287.753638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87364 -39.25951 -37.88222 -37.31883 -34.71638 -33.20540 -32.02282 -31.01956 -29.97335 -27.87611 -26.75946 -24.96910 -24.43507 -23.75421 -22.00834 -20.87151 -18.34489 -18.30757 -17.75870 -17.14782 -16.62648 -16.24196 -16.01094 -15.77174 -15.72696 -15.29901 -14.68184 -14.55106 -14.42515 -14.40584 -13.85702 -13.55280 -13.12778 -13.02407 -12.87803 -12.83111 -12.59397 -12.50053 -12.44259 -12.28187 -12.20194 -11.89177 -11.78596 -11.65430 -11.51770 -11.28533 -10.56710 -10.37684 -10.00498 -9.60156 -8.86697 -8.15763 -6.24644 0.09777 0.33117 1.13407 1.42192 1.43100 1.54688 2.42555 2.59829 2.83950 3.15987 3.36797 3.84289 3.88332 3.96334 4.18908 4.24609 4.37808 4.42480 4.47087 4.53265 4.61775 4.66123 4.70114 4.75568 4.79352 4.83753 4.94602 5.00671 5.03692 5.15727 5.23463 5.25974 5.33050 5.41263 5.51917 5.57078 5.72863 5.81288 6.12811 6.30312 6.48472 6.70225 6.91532 7.44180 8.94632 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.003349 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.680971 B = 8358.492208 C = 8938.254451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.057 3.943 3 N -0.537 5.537 4 C 0.203 3.797 5 C -0.515 4.515 6 H 0.059 0.941 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.965 3.035 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.059 3.941 14 C 0.150 3.850 15 H 0.076 0.924 16 O -0.382 6.382 17 C 0.028 3.972 18 C -0.109 4.109 19 C -0.102 4.102 20 C -0.114 4.114 21 C -0.043 4.043 22 Cl -0.072 7.072 23 C -0.115 4.115 24 C -0.087 4.087 25 H 0.056 0.944 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.102 0.898 30 H -0.025 1.025 31 H -0.001 1.001 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.042 0.958 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -2.176 21.007 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.070 4.070 3 N -0.260 5.260 4 C 0.077 3.923 5 C -0.553 4.553 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.790 3.210 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.189 1.189 13 C -0.070 4.070 14 C 0.091 3.909 15 H 0.094 0.906 16 O -0.301 6.301 17 C -0.068 4.068 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.070 4.070 22 Cl -0.043 7.043 23 C -0.134 4.134 24 C -0.105 4.105 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.120 0.880 30 H -0.008 1.008 31 H 0.017 0.983 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.118 0.882 37 H 0.060 0.940 38 H 0.161 0.839 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.017 -2.073 20.968 21.166 hybrid contribution -0.494 0.343 -0.941 1.117 sum 1.523 -1.730 20.026 20.159 Atomic orbital electron populations 1.22227 0.98954 1.01936 1.00249 1.22190 0.92626 0.90099 1.02113 1.62212 1.59409 1.02890 1.01514 1.19465 0.92979 0.92470 0.87421 1.21453 1.23676 1.16946 0.93256 0.92230 1.25866 0.96606 0.95283 1.01969 1.70084 1.37800 1.25247 1.24542 0.85441 0.79158 0.77831 0.78536 1.20044 1.20887 1.18902 1.22201 0.97333 0.97675 0.89743 1.20819 0.99305 0.81091 0.89682 0.90617 1.87881 1.37909 1.21896 1.82367 1.22894 0.89156 0.97635 0.97137 1.20556 0.96627 0.96809 0.97055 1.21208 1.00007 0.93985 0.96875 1.21213 0.96803 1.00875 0.94323 1.21099 0.98811 0.95244 0.91830 1.98364 1.93996 1.70324 1.41590 1.21242 1.00142 0.93758 0.98247 1.21056 0.96347 0.99549 0.93558 0.92550 0.95348 0.91148 0.93281 0.88047 1.00762 0.98258 0.92862 0.94027 0.91462 0.93629 0.88195 0.93965 0.83947 0.83313 0.83463 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.34 9.31 71.98 0.67 -5.67 16 2 C 0.06 2.20 5.70 86.30 0.49 2.70 16 3 N -0.54 -22.85 4.58 -900.79 -4.12 -26.97 16 4 C 0.20 10.75 4.59 85.56 0.39 11.14 16 5 C -0.51 -29.25 8.63 25.60 0.22 -29.02 16 6 H 0.06 3.34 7.38 -2.91 -0.02 3.32 16 7 C 0.00 0.01 5.46 84.65 0.46 0.48 16 8 N -0.94 -56.59 13.29 21.45 0.28 -56.31 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 13 C 0.06 2.08 4.69 86.30 0.40 2.48 16 14 C 0.15 4.16 2.53 29.85 0.08 4.24 16 15 H 0.08 2.15 7.70 -2.39 -0.02 2.13 16 16 O -0.38 -10.01 6.71 -148.98 -1.00 -11.01 16 17 C 0.03 0.56 10.79 113.37 1.22 1.78 16 18 C -0.11 -2.64 4.96 -19.86 -0.10 -2.74 16 19 C -0.10 -2.23 9.68 22.27 0.22 -2.02 16 20 C -0.11 -2.26 9.83 22.29 0.22 -2.04 16 21 C -0.04 -0.88 6.32 22.32 0.14 -0.74 16 22 Cl -0.07 -1.33 28.96 -2.72 -0.08 -1.40 16 23 C -0.12 -2.31 9.83 22.29 0.22 -2.09 16 24 C -0.09 -1.94 9.35 22.26 0.21 -1.73 16 25 H 0.06 1.92 6.00 -2.38 -0.01 1.91 16 26 H 0.03 1.19 6.36 -2.39 -0.02 1.18 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 2.08 7.16 -2.39 -0.02 2.06 16 29 H 0.10 3.41 5.44 -2.38 -0.01 3.40 16 30 H -0.03 -1.43 5.90 -2.39 -0.01 -1.45 16 31 H 0.00 -0.04 7.67 -2.39 -0.02 -0.06 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.04 1.48 5.64 -2.39 -0.01 1.46 16 34 H 0.07 2.49 7.62 -2.39 -0.02 2.47 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.04 0.88 8.08 -2.39 -0.02 0.86 16 38 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.14 2.99 7.63 -2.91 -0.02 2.97 16 Total: -1.00 -63.56 345.53 2.97 -60.59 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.02 Total: 11.76 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 4.85 Total: -23.22 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -3.84 Total: -83.28 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -1.00 Total: -11.01 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.40 kcal Total: -63.56 2.97 -60.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283121215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.243 kcal (2) G-P(sol) polarization free energy of solvation -63.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds