Wall clock time and date at job start Tue Mar 31 2020 06:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46998 * 2 1 4 4 C 1.52993 * 109.47223 * 239.99579 * 2 1 3 5 5 C 1.50697 * 109.47554 * 64.63669 * 4 2 1 6 6 H 1.08007 * 119.99586 * 5.07254 * 5 4 2 7 7 C 1.37875 * 120.00263 * 185.07794 * 5 4 2 8 8 N 1.31509 * 120.00030 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00025 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46521 * 89.99997 * 9 7 5 11 11 H 1.48492 * 109.47071 * 209.99682 * 9 7 5 12 12 H 1.48493 * 109.47202 * 330.00189 * 9 7 5 13 13 N 1.46900 * 109.46515 * 119.99430 * 2 1 3 14 14 C 1.46902 * 110.99585 * 179.60946 * 13 2 1 15 15 C 1.46895 * 111.00185 * 303.56191 * 13 2 1 16 16 C 1.53001 * 109.47041 * 163.48097 * 15 13 2 17 17 O 1.42901 * 109.47015 * 64.14062 * 16 15 13 18 18 C 1.35932 * 116.99837 * 179.97438 * 17 16 15 19 19 C 1.38705 * 120.05894 * 359.97438 * 18 17 16 20 20 C 1.38156 * 119.95279 * 180.02562 * 19 18 17 21 21 C 1.38274 * 120.07752 * 0.02562 * 20 19 18 22 22 C 1.38247 * 120.12311 * 0.02562 * 21 20 19 23 23 C 1.38258 * 120.03765 * 359.68161 * 22 21 20 24 24 Cl 1.73603 * 120.03604 * 180.31641 * 23 22 21 25 25 H 1.09002 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47499 * 300.00569 * 1 2 3 27 27 H 1.09010 * 109.46874 * 60.00538 * 1 2 3 28 28 H 1.09000 * 109.46835 * 184.63662 * 4 2 1 29 29 H 1.09005 * 109.47346 * 304.63480 * 4 2 1 30 30 H 0.97001 * 120.00174 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47180 * 189.76321 * 14 13 2 32 32 H 1.08997 * 109.47464 * 309.76705 * 14 13 2 33 33 H 1.09009 * 109.46924 * 69.76698 * 14 13 2 34 34 H 1.09001 * 109.46935 * 43.48361 * 15 13 2 35 35 H 1.08997 * 109.47532 * 283.48299 * 15 13 2 36 36 H 1.09003 * 109.47560 * 304.13894 * 16 15 13 37 37 H 1.09005 * 109.47353 * 184.13994 * 16 15 13 38 38 H 1.07996 * 120.02330 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.95954 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.93986 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.98012 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6337 0.0521 -2.4770 6 1 1.1403 1.0075 -2.3747 7 6 1.8917 -0.4598 -3.7309 8 7 2.4928 -1.6228 -3.8555 9 14 1.3874 0.4987 -5.2530 10 1 2.4973 1.3961 -5.6630 11 1 1.0831 -0.4480 -6.3558 12 1 0.1812 1.3100 -4.9499 13 7 2.0195 -0.6924 1.1995 14 6 3.4880 -0.7201 1.2289 15 6 1.4802 -0.0771 2.4195 16 6 1.6593 -1.0375 3.5971 17 8 3.0530 -1.2395 3.8392 18 6 3.3876 -2.0721 4.8603 19 6 2.3951 -2.6814 5.6136 20 6 2.7377 -3.5268 6.6512 21 6 4.0687 -3.7657 6.9398 22 6 5.0605 -3.1593 6.1917 23 6 4.7233 -2.3171 5.1484 24 17 5.9688 -1.5620 4.2038 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.1268 -0.7938 -1.2085 29 1 1.6105 -1.7222 -1.2916 30 1 2.6740 -1.9831 -4.7377 31 1 3.8230 -1.3821 2.0274 32 1 3.8637 -1.0848 0.2729 33 1 3.8669 0.2862 1.4081 34 1 0.4199 0.1346 2.2814 35 1 2.0125 0.8517 2.6240 36 1 1.1892 -1.9924 3.3620 37 1 1.1938 -0.6126 4.4865 38 1 1.3553 -2.4944 5.3898 39 1 1.9649 -4.0010 7.2381 40 1 4.3340 -4.4274 7.7512 41 1 6.0993 -3.3472 6.4194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297835090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:52 Heat of formation + Delta-G solvation = -33.404734 kcal Electronic energy + Delta-G solvation = -21686.350725 eV Core-core repulsion = 18398.854766 eV Total energy + Delta-G solvation = -3287.495959 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18762 -39.42854 -38.19110 -37.28169 -35.23469 -33.07382 -31.80203 -31.18985 -30.27827 -29.00281 -26.03007 -25.57851 -24.05316 -23.33322 -22.16227 -20.64999 -19.41465 -18.65534 -17.38169 -17.27504 -16.96298 -16.56076 -16.36554 -15.58474 -15.47799 -15.34083 -14.90917 -14.81572 -14.27914 -13.97400 -13.88775 -13.57651 -13.22978 -13.13070 -12.85209 -12.81304 -12.66618 -12.50174 -12.41067 -12.28558 -12.11480 -11.93699 -11.72616 -11.67824 -11.63621 -11.16803 -10.96574 -10.50366 -9.85234 -9.19403 -9.10101 -8.17520 -6.27354 0.19310 0.39120 1.26757 1.39780 1.41061 1.51984 2.21584 2.40826 2.70097 3.07093 3.15836 3.79759 3.89539 4.12925 4.17739 4.21983 4.23987 4.32391 4.38171 4.43278 4.49674 4.54213 4.64865 4.70540 4.81745 4.88418 4.90506 5.12118 5.13517 5.23735 5.25372 5.33334 5.44138 5.48740 5.53349 5.72851 5.75768 5.80202 6.11715 6.31781 6.36927 6.42107 6.89054 7.40592 8.94772 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.025332 B = 0.003161 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.074203 B = 8854.778453 C = 9433.729421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.091 3.909 3 H 0.018 0.982 4 C 0.040 3.960 5 C -0.531 4.531 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.260 1.260 13 N -0.543 5.543 14 C 0.034 3.966 15 C 0.047 3.953 16 C 0.067 3.933 17 O -0.316 6.316 18 C 0.120 3.880 19 C -0.205 4.205 20 C -0.073 4.073 21 C -0.149 4.149 22 C -0.080 4.080 23 C -0.098 4.098 24 Cl -0.078 7.078 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.053 0.947 28 H -0.012 1.012 29 H -0.007 1.007 30 H 0.262 0.738 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.013 0.987 34 H 0.118 0.882 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -2.077 25.137 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.016 4.016 3 H 0.036 0.964 4 C 0.003 3.997 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.184 1.184 13 N -0.267 5.267 14 C -0.114 4.114 15 C -0.081 4.081 16 C -0.008 4.008 17 O -0.229 6.229 18 C 0.073 3.927 19 C -0.224 4.224 20 C -0.091 4.091 21 C -0.167 4.167 22 C -0.099 4.099 23 C -0.125 4.125 24 Cl -0.049 7.049 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.006 0.994 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.136 0.864 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.179 0.821 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.618 -2.487 24.767 24.899 hybrid contribution 0.537 1.120 -1.386 1.862 sum -0.081 -1.367 23.381 23.421 Atomic orbital electron populations 1.21726 0.93319 1.01665 1.01404 1.21581 0.96404 0.94032 0.89608 0.96441 1.19010 0.94203 0.94880 0.91656 1.21582 1.38218 1.05320 0.91830 0.92026 1.25948 0.95274 0.95940 1.02660 1.70121 1.43382 1.19727 1.24170 0.85481 0.78970 0.78328 0.78476 1.20146 1.20871 1.18409 1.62089 1.08505 1.54053 1.02091 1.22464 0.87714 0.99594 1.01662 1.22454 1.02237 0.95008 0.88390 1.23075 0.79210 1.00549 0.97981 1.86277 1.28244 1.61315 1.47112 1.19090 0.92544 0.91990 0.89074 1.21544 0.99347 1.02268 0.99200 1.21472 0.97501 0.94961 0.95187 1.21401 0.92082 1.01720 1.01466 1.21206 1.01971 0.94227 0.92480 1.20569 0.87107 1.04890 0.99954 1.98368 1.52610 1.81456 1.72486 0.93166 0.90786 0.92794 0.99427 0.98818 0.92935 0.89257 0.94021 0.96877 0.86410 0.94425 0.90848 0.88699 0.83042 0.82207 0.82132 0.83152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 8.72 71.98 0.63 -3.88 16 2 C 0.09 3.90 2.10 44.91 0.09 3.99 16 3 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 4 C 0.04 2.17 4.37 29.84 0.13 2.30 16 5 C -0.53 -30.45 8.30 25.60 0.21 -30.24 16 6 H 0.06 3.37 7.23 -2.91 -0.02 3.34 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 9 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 13 N -0.54 -20.23 4.58 -897.06 -4.11 -24.34 16 14 C 0.03 1.32 8.88 127.69 1.13 2.45 16 15 C 0.05 1.27 5.38 86.30 0.46 1.74 16 16 C 0.07 1.50 5.06 71.98 0.36 1.86 16 17 O -0.32 -8.64 6.52 -92.79 -0.60 -9.24 16 18 C 0.12 2.90 6.68 22.52 0.15 3.05 16 19 C -0.20 -3.70 9.04 22.36 0.20 -3.49 16 20 C -0.07 -1.00 10.04 22.26 0.22 -0.78 16 21 C -0.15 -2.01 10.04 22.28 0.22 -1.79 16 22 C -0.08 -1.44 9.83 22.28 0.22 -1.23 16 23 C -0.10 -2.37 6.33 22.41 0.14 -2.23 16 24 Cl -0.08 -2.10 28.51 -2.72 -0.08 -2.18 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 2.06 6.02 -2.39 -0.01 2.04 16 27 H 0.05 2.10 7.03 -2.38 -0.02 2.08 16 28 H -0.01 -0.74 5.97 -2.39 -0.01 -0.76 16 29 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 30 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.09 3.31 5.59 -2.39 -0.01 3.30 16 32 H 0.04 1.89 5.74 -2.39 -0.01 1.88 16 33 H 0.01 0.49 7.99 -2.38 -0.02 0.47 16 34 H 0.12 2.72 5.46 -2.39 -0.01 2.71 16 35 H 0.04 1.05 7.94 -2.39 -0.02 1.03 16 36 H 0.07 1.64 7.67 -2.39 -0.02 1.62 16 37 H 0.10 1.50 7.66 -2.38 -0.02 1.48 16 38 H 0.15 2.14 6.30 -2.91 -0.02 2.13 16 39 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -70.10 341.47 3.19 -66.91 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.02 Total: 7.65 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 4.65 Total: -27.80 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -3.83 Total: -82.25 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.60 Total: -9.24 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -70.10 3.19 -66.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297835090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.503 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds