Wall clock time and date at job start Tue Mar 31 2020 06:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47325 * 2 1 4 4 C 1.53000 * 109.47496 * 120.00097 * 2 1 3 5 5 C 1.50695 * 109.47355 * 184.99692 * 4 2 1 6 6 H 1.07994 * 120.00381 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99761 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00004 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99773 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47220 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47031 * 120.00071 * 9 7 5 12 12 H 1.48496 * 109.46935 * 239.99970 * 9 7 5 13 13 N 1.46907 * 109.46919 * 240.00014 * 2 1 3 14 14 C 1.46898 * 111.00081 * 306.04829 * 13 2 1 15 15 C 1.46902 * 110.99963 * 70.00108 * 13 2 1 16 16 C 1.52998 * 109.46864 * 75.78235 * 15 13 2 17 17 O 1.42901 * 109.47106 * 65.07789 * 16 15 13 18 18 C 1.35927 * 116.99778 * 179.97438 * 17 16 15 19 19 C 1.38703 * 120.06007 * 359.97438 * 18 17 16 20 20 C 1.38160 * 119.95470 * 180.02562 * 19 18 17 21 21 C 1.38279 * 120.07589 * 0.02562 * 20 19 18 22 22 C 1.38246 * 120.12042 * 359.97192 * 21 20 19 23 23 C 1.38257 * 120.04382 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 120.03938 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.46783 * 300.00369 * 1 2 3 26 26 H 1.09000 * 109.46799 * 59.99719 * 1 2 3 27 27 H 1.09000 * 109.47325 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46730 * 304.99961 * 4 2 1 29 29 H 1.09002 * 109.46881 * 64.99638 * 4 2 1 30 30 H 0.97005 * 120.00104 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47298 * 188.87547 * 14 13 2 32 32 H 1.09000 * 109.47131 * 308.87222 * 14 13 2 33 33 H 1.08997 * 109.47197 * 68.87173 * 14 13 2 34 34 H 1.08998 * 109.46873 * 315.78456 * 15 13 2 35 35 H 1.08998 * 109.46894 * 195.78138 * 15 13 2 36 36 H 1.08997 * 109.47575 * 305.07338 * 16 15 13 37 37 H 1.09010 * 109.46945 * 185.07159 * 16 15 13 38 38 H 1.07997 * 120.02487 * 0.02562 * 19 18 17 39 39 H 1.07994 * 119.95743 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.93824 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.97828 * 179.74749 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0863 0.5391 7 6 4.2304 -1.1927 2.3582 8 7 3.5764 -1.8370 3.2999 9 14 6.0922 -1.0616 2.4365 10 1 6.5839 -0.2932 1.2648 11 1 6.4872 -0.3650 3.6871 12 1 6.6854 -2.4228 2.4195 13 7 2.0196 -0.6925 -1.1995 14 6 1.4342 -2.0355 -1.3079 15 6 1.7529 0.0972 -2.4091 16 6 2.7480 1.2565 -2.4909 17 8 4.0689 0.7392 -2.6628 18 6 5.0789 1.6442 -2.7547 19 6 4.8041 3.0018 -2.6816 20 6 5.8324 3.9198 -2.7759 21 6 7.1348 3.4867 -2.9435 22 6 7.4122 2.1343 -3.0167 23 6 6.3871 1.2114 -2.9229 24 17 6.7355 -0.4868 -3.0155 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6055 -0.2617 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 4.0608 -2.2438 4.0354 31 1 1.9281 -2.5834 -2.1103 32 1 1.5704 -2.5682 -0.3668 33 1 0.3698 -1.9512 -1.5270 34 1 0.7377 0.4920 -2.3687 35 1 1.8613 -0.5374 -3.2886 36 1 2.7029 1.8397 -1.5712 37 1 2.4944 1.8939 -3.3381 38 1 3.7872 3.3410 -2.5511 39 1 5.6185 4.9768 -2.7186 40 1 7.9368 4.2062 -3.0173 41 1 8.4298 1.7987 -3.1517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297835093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:55 Heat of formation + Delta-G solvation = -33.230335 kcal Electronic energy + Delta-G solvation = -22424.947162 eV Core-core repulsion = 19137.458766 eV Total energy + Delta-G solvation = -3287.488396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09172 -39.52089 -38.18649 -37.24500 -35.02391 -32.86490 -31.76851 -31.17360 -29.93220 -29.17263 -26.30933 -25.35215 -24.10127 -23.34587 -22.49687 -20.12058 -19.27688 -18.37472 -17.40879 -17.20402 -16.95097 -16.62446 -16.40934 -15.63906 -15.46741 -15.16681 -14.80067 -14.60168 -14.22182 -14.05056 -13.96455 -13.67661 -13.16062 -13.00352 -12.82196 -12.71303 -12.60109 -12.52057 -12.46306 -12.33064 -12.27817 -12.05238 -11.82714 -11.69255 -11.41144 -11.07140 -10.99725 -10.47250 -9.84328 -9.08041 -8.82327 -8.10826 -6.12681 0.20124 0.41669 1.30270 1.34087 1.37214 1.51494 2.31011 2.45644 2.71635 3.14175 3.28128 3.80260 3.92863 4.05937 4.18077 4.24198 4.27551 4.38053 4.40768 4.44785 4.45136 4.53938 4.60962 4.71849 4.80532 4.82253 4.87231 5.01556 5.16904 5.18918 5.25750 5.30493 5.32415 5.47613 5.51324 5.72726 5.78778 5.91539 6.33887 6.42360 6.49494 6.61137 7.01703 7.52660 9.01460 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.006429 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.931555 B = 4353.924891 C = 5629.847668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 H 0.063 0.937 4 C 0.035 3.965 5 C -0.484 4.484 6 H 0.051 0.949 7 C -0.001 4.001 8 N -0.939 5.939 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.536 5.536 14 C 0.035 3.965 15 C 0.053 3.947 16 C 0.064 3.936 17 O -0.306 6.306 18 C 0.123 3.877 19 C -0.210 4.210 20 C -0.073 4.073 21 C -0.151 4.151 22 C -0.083 4.083 23 C -0.102 4.102 24 Cl -0.080 7.080 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.052 0.948 28 H -0.008 1.008 29 H -0.003 1.003 30 H 0.257 0.743 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 11.959 -16.644 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 H 0.081 0.919 4 C -0.002 4.002 5 C -0.523 4.523 6 H 0.069 0.931 7 C -0.196 4.196 8 N -0.582 5.582 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.259 5.259 14 C -0.113 4.113 15 C -0.075 4.075 16 C -0.011 4.011 17 O -0.219 6.219 18 C 0.076 3.924 19 C -0.229 4.229 20 C -0.090 4.090 21 C -0.169 4.169 22 C -0.101 4.101 23 C -0.129 4.129 24 Cl -0.051 7.051 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.010 0.990 29 H 0.016 0.984 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.181 0.819 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.966 11.440 -16.474 20.080 hybrid contribution 0.084 -0.523 0.643 0.833 sum 1.050 10.917 -15.832 19.259 Atomic orbital electron populations 1.22393 0.96931 1.01860 1.02187 1.21629 0.92082 0.97127 0.90595 0.91885 1.19066 0.94891 0.94507 0.91712 1.21450 0.93366 1.31609 1.05883 0.93061 1.25691 1.01883 0.96010 0.96036 1.70074 1.36567 1.38420 1.13148 0.85753 0.82096 0.77668 0.77777 1.19585 1.20422 1.21099 1.61925 1.59586 1.02741 1.01678 1.22239 0.97010 0.90585 1.01421 1.22247 0.96394 0.95218 0.93611 1.23088 0.79564 0.97167 1.01275 1.86278 1.15723 1.33633 1.86226 1.19141 0.87758 0.89850 0.95628 1.21534 1.02444 0.90553 1.08328 1.21469 0.91873 1.00908 0.94789 1.21386 0.98112 0.94521 1.02922 1.21214 0.98196 0.92858 0.97849 1.20611 0.92957 0.85831 1.13501 1.98352 1.95030 1.14762 1.96994 0.92545 0.90865 0.92929 0.99005 0.98432 0.93382 0.91812 0.93631 0.94172 0.90236 0.89711 0.92614 0.88967 0.83169 0.81963 0.81904 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.47 8.47 71.98 0.61 -4.86 16 2 C 0.09 3.72 2.17 44.91 0.10 3.82 16 3 H 0.06 2.52 6.57 -2.39 -0.02 2.51 16 4 C 0.04 1.86 4.38 29.85 0.13 1.99 16 5 C -0.48 -28.41 8.84 25.60 0.23 -28.19 16 6 H 0.05 3.08 7.74 -2.91 -0.02 3.05 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 9 Si 0.94 48.20 29.54 68.60 2.03 50.23 16 10 H -0.27 -13.88 7.11 99.48 0.71 -13.18 16 11 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 13 N -0.54 -19.89 4.31 -897.05 -3.86 -23.75 16 14 C 0.04 1.24 8.51 127.69 1.09 2.32 16 15 C 0.05 1.45 5.27 86.30 0.45 1.91 16 16 C 0.06 1.74 4.93 71.98 0.35 2.10 16 17 O -0.31 -10.61 9.54 -92.73 -0.89 -11.50 16 18 C 0.12 3.93 6.68 22.52 0.15 4.08 16 19 C -0.21 -5.14 9.04 22.36 0.20 -4.94 16 20 C -0.07 -1.40 10.04 22.26 0.22 -1.18 16 21 C -0.15 -2.94 10.04 22.28 0.22 -2.71 16 22 C -0.08 -2.05 9.83 22.28 0.22 -1.83 16 23 C -0.10 -3.25 6.33 22.41 0.14 -3.11 16 24 Cl -0.08 -2.79 28.50 -2.72 -0.08 -2.87 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 1.80 6.45 -2.39 -0.02 1.78 16 27 H 0.05 1.67 6.53 -2.39 -0.02 1.65 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.00 -0.14 6.18 -2.39 -0.01 -0.16 16 30 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.04 1.90 6.04 -2.39 -0.01 1.89 16 33 H 0.04 1.17 6.76 -2.39 -0.02 1.15 16 34 H 0.08 1.75 6.17 -2.39 -0.01 1.74 16 35 H 0.08 2.18 7.94 -2.39 -0.02 2.16 16 36 H 0.06 1.62 6.18 -2.39 -0.01 1.60 16 37 H 0.09 1.79 7.66 -2.38 -0.02 1.78 16 38 H 0.15 3.02 6.30 -2.91 -0.02 3.00 16 39 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -72.89 343.93 3.09 -69.79 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.02 Total: 7.12 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 4.58 Total: -30.18 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -3.58 Total: -82.59 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.89 Total: -11.50 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.08 Total: -2.87 kcal Total: -72.89 3.09 -69.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297835093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.564 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds