Wall clock time and date at job start Tue Mar 31 2020 07:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47257 * 2 1 4 4 C 1.36933 * 119.99740 * 82.67329 * 3 2 1 5 5 H 1.07997 * 119.99654 * 170.34494 * 4 3 2 6 6 C 1.38811 * 120.00070 * 350.33813 * 4 3 2 7 7 N 1.31616 * 119.99999 * 7.05801 * 6 4 3 8 8 Si 1.86799 * 120.00081 * 187.05681 * 6 4 3 9 9 H 1.48509 * 109.47013 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47320 * 120.00048 * 8 6 4 11 11 H 1.48496 * 109.47402 * 240.00082 * 8 6 4 12 12 C 1.46503 * 119.99851 * 262.67470 * 3 2 1 13 13 H 1.08998 * 109.46481 * 174.29138 * 12 3 2 14 14 C 1.52998 * 109.47279 * 54.28653 * 12 3 2 15 15 C 1.50707 * 109.46643 * 294.28274 * 12 3 2 16 16 O 1.21274 * 120.00223 * 19.31439 * 15 12 3 17 17 N 1.34771 * 119.99411 * 199.30698 * 15 12 3 18 18 C 1.39001 * 120.00016 * 180.02562 * 17 15 12 19 19 N 1.29619 * 124.95086 * 180.02562 * 18 17 15 20 20 C 1.31983 * 116.92235 * 180.02562 * 19 18 17 21 21 C 1.50703 * 122.71591 * 179.72713 * 20 19 18 22 22 C 1.33448 * 114.57055 * 359.97438 * 20 19 18 23 23 C 1.50691 * 125.97144 * 179.97438 * 22 20 19 24 24 S 1.70972 * 124.94294 * 0.02567 * 18 17 15 25 25 H 1.08994 * 109.47785 * 66.33407 * 1 2 3 26 26 H 1.09001 * 109.47266 * 186.33840 * 1 2 3 27 27 H 1.09003 * 109.47006 * 306.32990 * 1 2 3 28 28 H 1.09003 * 109.46803 * 240.00311 * 2 1 3 29 29 H 1.09002 * 109.47246 * 120.00582 * 2 1 3 30 30 H 0.97005 * 120.00094 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.47263 * 59.99867 * 14 12 3 32 32 H 1.09002 * 109.46878 * 180.02562 * 14 12 3 33 33 H 1.09002 * 109.46870 * 299.99753 * 14 12 3 34 34 H 0.97000 * 120.00853 * 0.02562 * 17 15 12 35 35 H 1.09004 * 109.47045 * 90.02671 * 21 20 19 36 36 H 1.09002 * 109.47417 * 210.02278 * 21 20 19 37 37 H 1.08988 * 109.47447 * 330.02605 * 21 20 19 38 38 H 1.09003 * 109.47123 * 89.99992 * 23 22 20 39 39 H 1.09004 * 109.47306 * 209.99859 * 23 22 20 40 40 H 1.09000 * 109.47508 * 329.99739 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1040 2.0771 1.1762 5 1 2.6061 3.0329 1.2028 6 6 1.5454 1.5541 2.3343 7 7 1.0569 0.3319 2.3356 8 14 1.4869 2.5848 3.8911 9 1 2.0962 3.9134 3.6283 10 1 0.0746 2.7634 4.3138 11 1 2.2429 1.8974 4.9687 12 6 2.4151 2.0179 -1.2584 13 1 2.6516 3.0662 -1.0763 14 6 1.2655 1.9214 -2.2634 15 6 3.6286 1.3184 -1.8145 16 8 3.9084 0.1994 -1.4397 17 7 4.4028 1.9363 -2.7283 18 6 5.5219 1.2911 -3.2416 19 7 6.3308 1.7938 -4.1208 20 6 7.3460 1.0399 -4.4989 21 6 8.3614 1.4916 -5.5167 22 6 7.3977 -0.1569 -3.9107 23 6 8.4415 -1.2168 -4.1508 24 16 6.0317 -0.2814 -2.8052 25 1 -0.3634 0.4125 -0.9411 26 1 -0.3634 -1.0214 0.1135 27 1 -0.3633 0.6088 0.8279 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.6669 -0.0337 3.1450 31 1 0.3878 2.4272 -1.8612 32 1 1.5609 2.3947 -3.1998 33 1 1.0291 0.8730 -2.4454 34 1 4.1792 2.8314 -3.0279 35 1 9.1826 1.9990 -5.0103 36 1 8.7463 0.6256 -6.0552 37 1 7.8899 2.1771 -6.2208 38 1 9.2684 -1.0769 -3.4545 39 1 8.0008 -2.2021 -3.9982 40 1 8.8105 -1.1384 -5.1735 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299333110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:52 Heat of formation + Delta-G solvation = 25.916160 kcal Electronic energy + Delta-G solvation = -22229.382471 eV Core-core repulsion = 18978.795317 eV Total energy + Delta-G solvation = -3250.587154 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58019 -40.56512 -37.96508 -36.17714 -34.25278 -33.28386 -31.63955 -30.50199 -30.29798 -26.77087 -26.06000 -25.34953 -24.01614 -22.81600 -21.70432 -20.10173 -19.12086 -18.77301 -17.82579 -17.45238 -17.01123 -16.80341 -15.76918 -15.60748 -15.39205 -14.98314 -14.82411 -14.02888 -13.92750 -13.83939 -13.79664 -13.72533 -13.54923 -13.30554 -13.14187 -12.86890 -12.76666 -12.59628 -12.52664 -12.27595 -12.01369 -11.79620 -11.64813 -11.53168 -11.36551 -10.75704 -10.73141 -10.36738 -10.09969 -9.04486 -8.86817 -7.63460 -5.20019 -0.23350 0.18759 0.96554 1.33736 1.48431 1.51224 1.59615 1.64847 1.98856 2.52089 3.33211 3.54085 3.57505 3.86264 4.16420 4.25744 4.26741 4.35704 4.64455 4.72030 4.74578 4.78998 4.86399 4.89076 4.96478 5.02227 5.08721 5.11250 5.18412 5.25217 5.34148 5.41301 5.51285 5.59420 5.93727 6.04032 6.18819 6.47802 6.81197 6.91310 7.21973 7.87722 8.25688 9.22978 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.003885 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.779337 B = 7205.604648 C = 7313.803825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.178 3.822 3 N -0.585 5.585 4 C -0.261 4.261 5 H 0.083 0.917 6 C -0.051 4.051 7 N -0.920 5.920 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.292 1.292 11 H -0.300 1.300 12 C 0.163 3.837 13 H 0.111 0.889 14 C -0.143 4.143 15 C 0.490 3.510 16 O -0.524 6.524 17 N -0.617 5.617 18 C 0.234 3.766 19 N -0.527 5.527 20 C 0.060 3.940 21 C -0.070 4.070 22 C -0.286 4.286 23 C -0.066 4.066 24 S 0.187 5.813 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.012 0.988 29 H 0.066 0.934 30 H 0.242 0.758 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.432 0.568 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.676 1.852 -15.549 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.053 3.947 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.100 0.900 6 C -0.245 4.245 7 N -0.568 5.568 8 Si 0.800 3.200 9 H -0.192 1.192 10 H -0.219 1.219 11 H -0.228 1.228 12 C 0.050 3.950 13 H 0.128 0.872 14 C -0.202 4.202 15 C 0.275 3.725 16 O -0.397 6.397 17 N -0.270 5.270 18 C -0.133 4.133 19 N -0.251 5.251 20 C -0.071 4.071 21 C -0.129 4.129 22 C -0.408 4.408 23 C -0.125 4.125 24 S 0.438 5.562 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.273 0.727 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.162 0.782 -14.525 17.744 hybrid contribution 0.120 1.033 0.545 1.174 sum 10.283 1.815 -13.980 17.449 Atomic orbital electron populations 1.22168 0.98556 0.98545 0.98690 1.20780 0.92322 0.83900 0.97672 1.44223 1.72915 1.11817 1.01526 1.19730 1.30247 1.01813 0.87268 0.89966 1.25520 1.00369 0.97761 1.00816 1.70467 1.45025 1.14824 1.26504 0.85150 0.76784 0.78421 0.79689 1.19186 1.21873 1.22786 1.20508 0.89743 0.96925 0.87818 0.87152 1.22145 0.97839 1.02125 0.98077 1.23879 0.85380 0.86924 0.76323 1.90571 1.70912 1.20643 1.57585 1.43400 1.22137 1.20592 1.40877 1.23618 0.94537 0.97161 0.98034 1.66259 1.06438 1.36754 1.15646 1.20332 0.95466 0.90348 1.00917 1.20429 0.94733 1.02739 0.95025 1.26505 1.05583 1.02405 1.06277 1.20263 0.94313 0.93964 1.03932 1.85281 1.19201 1.11959 1.39786 0.95546 0.95868 0.93085 0.96954 0.91609 0.94715 0.90950 0.89437 0.93653 0.72742 0.89898 0.88417 0.90916 0.89968 0.91220 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 9.11 71.98 0.66 -5.01 16 2 C 0.18 8.96 4.29 86.38 0.37 9.33 16 3 N -0.59 -27.96 2.31 -682.19 -1.57 -29.54 16 4 C -0.26 -13.56 9.74 84.03 0.82 -12.74 16 5 H 0.08 4.05 7.71 -2.91 -0.02 4.02 16 6 C -0.05 -2.71 5.09 84.86 0.43 -2.28 16 7 N -0.92 -51.85 7.48 21.65 0.16 -51.68 16 8 Si 0.97 43.94 29.56 68.60 2.03 45.96 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 12 C 0.16 5.98 3.09 44.25 0.14 6.12 16 13 H 0.11 3.57 7.81 -2.39 -0.02 3.55 16 14 C -0.14 -4.32 8.12 71.98 0.58 -3.74 16 15 C 0.49 18.15 6.96 87.66 0.61 18.76 16 16 O -0.52 -23.32 11.94 -3.01 -0.04 -23.36 16 17 N -0.62 -18.94 5.40 -313.65 -1.69 -20.64 16 18 C 0.23 7.69 8.19 179.21 1.47 9.15 16 19 N -0.53 -16.21 10.58 -189.59 -2.01 -18.21 16 20 C 0.06 1.57 6.74 41.45 0.28 1.85 16 21 C -0.07 -1.18 10.06 71.24 0.72 -0.47 16 22 C -0.29 -7.29 6.58 24.60 0.16 -7.13 16 23 C -0.07 -1.10 10.09 71.23 0.72 -0.38 16 24 S 0.19 6.13 20.22 -56.49 -1.14 4.98 16 25 H 0.03 1.09 6.43 -2.39 -0.02 1.07 16 26 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 2.68 6.15 -2.39 -0.01 2.67 16 28 H 0.01 0.61 6.14 -2.39 -0.01 0.60 16 29 H 0.07 3.88 5.79 -2.39 -0.01 3.87 16 30 H 0.24 13.44 8.31 -92.70 -0.77 12.67 16 31 H 0.07 2.22 8.09 -2.39 -0.02 2.20 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.51 6.60 -2.39 -0.02 1.50 16 34 H 0.43 10.29 8.82 -92.71 -0.82 9.48 16 35 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.10 1.13 6.70 -2.39 -0.02 1.12 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.10 1.15 6.74 -2.39 -0.02 1.13 16 Total: -1.00 -66.94 331.01 2.94 -64.00 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.25 Total: 15.02 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.95 Total: 13.47 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -5.11 Total: -120.07 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.04 Total: -23.36 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.14 Total: 4.98 kcal Total: -66.94 2.94 -64.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299333110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.913 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds