Wall clock time and date at job start Tue Mar 31 2020 07:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21584 * 120.00378 * 359.97438 * 13 12 2 15 15 N 1.34776 * 120.00197 * 179.97438 * 13 12 2 16 16 C 1.39006 * 120.00480 * 179.97438 * 15 13 12 17 17 N 1.29624 * 124.94594 * 179.71809 * 16 15 13 18 18 C 1.32022 * 116.90332 * 179.77243 * 17 16 15 19 19 C 1.50706 * 122.71265 * 180.22331 * 18 17 16 20 20 C 1.52998 * 109.47407 * 255.31727 * 19 18 17 21 21 C 1.53001 * 109.47054 * 15.32026 * 19 18 17 22 22 C 1.53002 * 109.46890 * 135.31216 * 19 18 17 23 23 C 1.33415 * 114.57483 * 0.52057 * 18 17 16 24 24 S 1.70965 * 124.94063 * 0.02609 * 16 15 13 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 30 30 H 0.97001 * 119.99928 * 359.97438 * 15 13 12 31 31 H 1.08994 * 109.46957 * 60.00024 * 20 19 18 32 32 H 1.08998 * 109.46847 * 180.02562 * 20 19 18 33 33 H 1.09003 * 109.46873 * 300.00016 * 20 19 18 34 34 H 1.08999 * 109.47503 * 59.99193 * 21 19 18 35 35 H 1.08990 * 109.47072 * 179.97438 * 21 19 18 36 36 H 1.09007 * 109.46724 * 299.99608 * 21 19 18 37 37 H 1.09003 * 109.46933 * 60.00263 * 22 19 18 38 38 H 1.08995 * 109.47256 * 179.97438 * 22 19 18 39 39 H 1.08998 * 109.47715 * 300.00780 * 22 19 18 40 40 H 1.07999 * 125.96692 * 179.75305 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8583 1.1614 2.4117 15 7 2.5959 -0.6538 3.4576 16 6 2.7292 0.0397 4.6549 17 7 3.1453 -0.4758 5.7691 18 6 3.2150 0.3315 6.8115 19 6 3.6851 -0.1281 8.1676 20 6 2.4822 -0.2759 9.1013 21 6 4.3938 -1.4773 8.0314 22 6 4.6568 0.9021 8.7467 23 6 2.8298 1.5856 6.5688 24 16 2.3611 1.6948 4.8741 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 2.8260 -1.5951 3.4142 31 1 1.7900 -1.0099 8.6887 32 1 2.8223 -0.6079 10.0822 33 1 1.9773 0.6853 9.1983 34 1 5.2508 -1.3720 7.3661 35 1 4.7342 -1.8095 9.0120 36 1 3.7016 -2.2113 7.6188 37 1 4.1520 1.8633 8.8437 38 1 4.9965 0.5700 9.7276 39 1 5.5138 1.0075 8.0814 40 1 2.8094 2.3929 7.2859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339124827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:19 Heat of formation + Delta-G solvation = -13.756224 kcal Electronic energy + Delta-G solvation = -21509.494005 eV Core-core repulsion = 18257.186527 eV Total energy + Delta-G solvation = -3252.307478 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70529 -40.87212 -37.60152 -36.80611 -35.48181 -34.35449 -31.12810 -30.03885 -28.07769 -27.99919 -27.34667 -25.79823 -23.78018 -22.42327 -21.99842 -20.67632 -19.14311 -18.84584 -17.93717 -17.50780 -17.01340 -16.82092 -16.28980 -15.89477 -15.59960 -15.24773 -14.68134 -14.61057 -14.42374 -14.13359 -13.79009 -13.19545 -13.13156 -12.98570 -12.93562 -12.90601 -12.72882 -12.50356 -12.30750 -12.16807 -12.07658 -11.89652 -11.71014 -11.61261 -11.12480 -11.06819 -10.66319 -10.62760 -10.14959 -10.00771 -9.07837 -8.18944 -6.36006 -0.13897 0.24018 1.00133 1.33303 1.46230 1.47904 1.57582 1.65237 2.16715 2.40660 3.10958 3.15157 3.49925 3.95500 4.13550 4.22492 4.46868 4.54192 4.70987 4.82934 4.84435 4.87518 4.91901 4.95385 5.03717 5.06442 5.07664 5.15721 5.23091 5.28918 5.43187 5.46217 5.47786 5.52283 5.57108 5.74868 5.99017 6.06804 6.68565 6.78397 6.97252 7.27227 7.42198 8.87443 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.003009 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.092674 B = 9303.608821 C = 9638.919376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.289 3.711 3 H 0.009 0.991 4 C -0.549 4.549 5 H 0.075 0.925 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.700 5.700 13 C 0.694 3.306 14 O -0.597 6.597 15 N -0.629 5.629 16 C 0.254 3.746 17 N -0.522 5.522 18 C 0.089 3.911 19 C 0.004 3.996 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.314 4.314 24 S 0.207 5.793 25 H 0.015 0.985 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.266 0.734 29 H 0.408 0.592 30 H 0.428 0.572 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -3.244 21.184 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.186 3.814 3 H 0.026 0.974 4 C -0.587 4.587 5 H 0.093 0.907 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.797 3.203 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.352 5.352 13 C 0.393 3.607 14 O -0.476 6.476 15 N -0.282 5.282 16 C -0.114 4.114 17 N -0.246 5.246 18 C -0.043 4.043 19 C 0.001 3.999 20 C -0.190 4.190 21 C -0.182 4.182 22 C -0.193 4.193 23 C -0.454 4.454 24 S 0.456 5.544 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.243 0.757 30 H 0.268 0.732 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.565 -1.883 20.236 20.830 hybrid contribution 0.530 -1.407 -0.551 1.602 sum 5.095 -3.290 19.685 20.599 Atomic orbital electron populations 1.21948 0.98048 0.99650 0.99910 1.18381 0.91097 0.91963 0.79964 0.97357 1.21509 1.32860 1.13762 0.90560 0.90719 1.25737 0.94838 0.95538 1.02157 1.70032 1.36789 1.23708 1.24747 0.85347 0.78935 0.78028 0.78032 1.19705 1.21276 1.18926 1.45438 1.67855 1.14226 1.07729 1.16071 0.78842 0.85042 0.80786 1.90813 1.57982 1.15459 1.83372 1.41701 1.67057 1.14587 1.04886 1.23272 1.02314 0.96141 0.89634 1.66158 1.22731 1.38059 0.97614 1.20143 1.00356 0.88969 0.94840 1.19300 0.96471 0.96759 0.87323 1.21851 0.96167 1.02074 0.98934 1.21657 0.99596 0.95345 1.01586 1.21898 0.97984 0.98155 1.01219 1.27377 1.13506 1.02659 1.01839 1.85318 1.60969 1.05387 1.02681 0.96587 0.94059 0.91150 0.92431 0.75676 0.73157 0.93876 0.89937 0.91938 0.93921 0.90776 0.93353 0.91477 0.90023 0.93382 0.78597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.66 9.26 71.98 0.67 -5.99 16 2 C 0.29 14.33 2.56 44.25 0.11 14.44 16 3 H 0.01 0.50 7.58 -2.39 -0.02 0.48 16 4 C -0.55 -27.93 8.73 25.60 0.22 -27.71 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.91 -50.91 11.32 21.45 0.24 -50.67 16 8 Si 0.97 40.91 29.54 68.60 2.03 42.93 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 12 N -0.70 -27.74 5.07 -461.42 -2.34 -30.08 16 13 C 0.69 27.27 8.49 179.06 1.52 28.79 16 14 O -0.60 -27.53 13.47 -3.98 -0.05 -27.58 16 15 N -0.63 -19.97 5.41 -327.47 -1.77 -21.74 16 16 C 0.25 8.28 8.19 179.20 1.47 9.75 16 17 N -0.52 -15.57 9.60 -189.58 -1.82 -17.39 16 18 C 0.09 2.25 5.40 41.44 0.22 2.48 16 19 C 0.00 0.08 0.90 -52.93 -0.05 0.03 16 20 C -0.13 -2.05 8.43 71.98 0.61 -1.45 16 21 C -0.12 -2.33 7.92 71.98 0.57 -1.76 16 22 C -0.13 -1.93 8.13 71.98 0.58 -1.34 16 23 C -0.31 -7.65 10.38 66.73 0.69 -6.96 16 24 S 0.21 6.54 20.21 -56.49 -1.14 5.40 16 25 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16 28 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.41 13.30 8.55 -92.71 -0.79 12.51 16 30 H 0.43 10.84 8.83 -92.71 -0.82 10.02 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.04 7.97 -2.38 -0.02 1.02 16 37 H 0.07 0.84 7.14 -2.39 -0.02 0.82 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 40 H 0.20 3.51 7.30 -2.91 -0.02 3.49 16 Total: -1.00 -63.44 342.41 1.66 -61.77 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.55 Total: 25.69 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 7.07 Total: 11.66 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -5.69 Total: -119.87 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 6.54 SS G_CDS: -1.14 Total: 5.40 kcal Total: -63.44 1.66 -61.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339124827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.019 kcal (2) G-P(sol) polarization free energy of solvation -63.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds