Wall clock time and date at job start Tue Mar 31 2020 07:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.46817 * 2 1 4 4 C 1.50703 * 109.46742 * 120.00082 * 2 1 3 5 5 H 1.07998 * 119.99868 * 120.00772 * 4 2 1 6 6 C 1.37877 * 119.99906 * 299.99862 * 4 2 1 7 7 N 1.31512 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99752 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47341 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46983 * 120.00164 * 8 6 4 11 11 H 1.48504 * 109.47054 * 239.99654 * 8 6 4 12 12 N 1.46496 * 109.47113 * 239.99810 * 2 1 3 13 13 C 1.46497 * 120.00352 * 300.00291 * 12 2 1 14 14 C 1.34776 * 119.99846 * 119.99870 * 12 2 1 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 12 2 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 12 2 17 17 C 1.50706 * 109.47294 * 180.02562 * 16 14 12 18 18 C 1.38260 * 119.99900 * 269.73348 * 17 16 14 19 19 C 1.38211 * 119.99543 * 179.81072 * 18 17 16 20 20 C 1.38260 * 120.00364 * 0.39211 * 19 18 17 21 21 C 1.38219 * 119.99819 * 359.85936 * 20 19 18 22 22 C 1.50696 * 120.00072 * 179.97438 * 21 20 19 23 23 F 1.39899 * 109.47227 * 29.97281 * 22 21 20 24 24 F 1.39898 * 109.47255 * 149.98058 * 22 21 20 25 25 C 1.38213 * 119.99877 * 90.00166 * 17 16 14 26 26 H 1.09003 * 109.46701 * 59.99870 * 1 2 3 27 27 H 1.08997 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47114 * 300.00123 * 1 2 3 29 29 H 0.97003 * 119.99920 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46908 * 270.00137 * 13 12 2 31 31 H 1.09000 * 109.47065 * 29.99587 * 13 12 2 32 32 H 1.09002 * 109.47641 * 149.99946 * 13 12 2 33 33 H 1.09001 * 109.46665 * 60.00498 * 16 14 12 34 34 H 1.09000 * 109.47722 * 300.00830 * 16 14 12 35 35 H 1.07997 * 120.00247 * 359.97438 * 18 17 16 36 36 H 1.08004 * 120.00277 * 180.23027 * 19 18 17 37 37 H 1.08001 * 120.00531 * 179.83802 * 20 19 18 38 38 H 1.09001 * 109.46801 * 269.97777 * 22 21 20 39 39 H 1.08001 * 119.99504 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1472 -2.2865 3.6039 10 1 3.1472 -0.1858 4.8162 11 1 1.1676 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0866 1.1254 -1.8911 16 6 3.2961 -0.7462 -3.3134 17 6 4.1337 0.2009 -4.1336 18 6 3.5414 0.9769 -5.1126 19 6 4.3091 1.8483 -5.8621 20 6 5.6705 1.9381 -5.6382 21 6 6.2634 1.1585 -4.6630 22 6 7.7473 1.2559 -4.4194 23 9 8.1861 2.5488 -4.7246 24 9 8.0187 0.9762 -3.0758 25 6 5.4949 0.2896 -3.9107 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7087 1.1613 3.4844 30 1 2.4158 -2.7377 -0.9716 31 1 0.6905 -2.3002 -0.9846 32 1 1.6239 -2.2852 -2.5002 33 1 2.4485 -1.0891 -3.9068 34 1 3.9017 -1.6024 -3.0165 35 1 2.4786 0.9041 -5.2900 36 1 3.8459 2.4573 -6.6244 37 1 6.2707 2.6171 -6.2256 38 1 8.2673 0.5369 -5.0524 39 1 5.9580 -0.3195 -3.1485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344408321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:05 Heat of formation + Delta-G solvation = -114.415474 kcal Electronic energy + Delta-G solvation = -23753.749059 eV Core-core repulsion = 19910.943531 eV Total energy + Delta-G solvation = -3842.805528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.05335 -47.07270 -39.79705 -38.55753 -35.34550 -33.24255 -32.66196 -31.70229 -29.64674 -27.35983 -26.21927 -26.07008 -25.19733 -22.43921 -21.76464 -20.54252 -18.34799 -17.56036 -17.36764 -17.18232 -16.62903 -16.17410 -15.93260 -15.37106 -15.24488 -14.46184 -14.37165 -14.10553 -13.81479 -13.50404 -13.16123 -13.01479 -12.90529 -12.59183 -12.58381 -12.32532 -11.98481 -11.79680 -11.57246 -11.45809 -11.14336 -11.05462 -10.86583 -10.79432 -10.68192 -10.23496 -10.16806 -9.21140 -9.08032 -8.98506 -8.63347 -8.41922 -7.58509 -6.06730 -4.14645 1.12881 1.32941 3.26354 3.33536 3.35959 3.40170 3.48499 3.69357 4.06213 4.08611 4.40615 4.45720 4.75972 4.81409 4.94351 5.05291 5.22456 5.26990 5.29673 5.33781 5.54317 5.58071 5.71630 5.87261 5.97857 6.05288 6.27922 6.30255 6.34467 6.55260 6.75451 6.80962 6.87161 7.05495 7.43203 7.52842 7.72143 8.01981 8.20222 8.53102 8.84416 9.06265 9.52089 10.98630 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.003829 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.364291 B = 7310.888063 C = 8168.412726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.594 5.594 13 C 0.086 3.914 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.106 4.106 17 C -0.054 4.054 18 C -0.088 4.088 19 C -0.120 4.120 20 C -0.094 4.094 21 C -0.172 4.172 22 C 0.315 3.685 23 F -0.202 7.202 24 F -0.197 7.197 25 C -0.072 4.072 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.262 0.738 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -4.302 -17.938 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.326 5.326 13 C -0.058 4.058 14 C 0.290 3.710 15 O -0.422 6.422 16 C -0.146 4.146 17 C -0.054 4.054 18 C -0.106 4.106 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.172 4.172 22 C 0.261 3.739 23 F -0.183 7.183 24 F -0.179 7.179 25 C -0.090 4.090 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.189 -3.551 -17.631 19.369 hybrid contribution 0.257 -0.469 1.093 1.216 sum 7.446 -4.020 -16.538 18.577 Atomic orbital electron populations 1.22096 0.98273 0.99308 1.00835 1.18946 0.90815 0.94560 0.79994 0.91911 1.21353 1.31704 1.12940 0.90291 0.92260 1.24898 0.94960 0.94979 0.98991 1.69889 1.36453 1.22652 1.23636 0.86443 0.78589 0.79590 0.82781 1.19823 1.20902 1.20949 1.48240 1.49084 1.11640 1.23613 1.21570 1.01709 0.83280 0.99274 1.20200 0.79462 0.87221 0.84146 1.90688 1.57872 1.17006 1.76662 1.20788 1.00066 0.98120 0.95576 1.19369 0.93188 0.97390 0.95468 1.21139 0.99862 0.94839 0.94726 1.21047 0.93498 0.98989 1.00306 1.20832 0.95378 0.97814 0.97142 1.20313 0.94301 1.01745 1.00875 1.20283 0.92392 0.81477 0.79699 1.92983 1.90793 1.41624 1.92902 1.93024 1.94814 1.93486 1.36534 1.20754 0.93438 0.97569 0.97214 0.97031 0.95112 0.88803 0.92752 0.93272 0.90838 0.92955 0.88348 0.88329 0.85714 0.85507 0.85461 0.86351 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 2 C 0.26 6.58 2.64 -69.08 -0.18 6.40 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.23 8.37 -34.44 -0.29 -14.52 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.59 -12.45 2.75 -175.26 -0.48 -12.93 16 13 C 0.09 1.37 9.48 59.85 0.57 1.94 16 14 C 0.50 10.21 7.67 -10.99 -0.08 10.12 16 15 O -0.54 -13.55 15.36 5.56 0.09 -13.46 16 16 C -0.11 -1.48 4.38 -29.03 -0.13 -1.61 16 17 C -0.05 -0.77 4.37 -104.62 -0.46 -1.23 16 18 C -0.09 -1.13 9.70 -39.58 -0.38 -1.51 16 19 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 20 C -0.09 -1.09 9.40 -39.58 -0.37 -1.46 16 21 C -0.17 -2.18 5.74 -104.62 -0.60 -2.78 16 22 C 0.32 3.50 5.65 36.00 0.20 3.71 16 23 F -0.20 -2.49 16.48 2.25 0.04 -2.45 16 24 F -0.20 -2.74 16.48 2.25 0.04 -2.70 16 25 C -0.07 -1.01 9.05 -39.58 -0.36 -1.37 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 32 H 0.05 0.63 6.44 -51.93 -0.33 0.29 16 33 H 0.10 1.10 7.34 -51.93 -0.38 0.72 16 34 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 37 H 0.13 1.22 7.60 -52.49 -0.40 0.82 16 38 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.13 1.76 7.61 -52.49 -0.40 1.37 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -33.21 333.61 -6.87 -40.08 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.93 Total: 0.58 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.24 Total: -5.61 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.14 Total: -37.64 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.07 Total: -5.16 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.21 -6.87 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344408321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.335 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds