Wall clock time and date at job start Tue Mar 31 2020 07:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.46817 * 2 1 4 4 C 1.50703 * 109.46742 * 120.00082 * 2 1 3 5 5 H 1.07998 * 119.99868 * 120.00772 * 4 2 1 6 6 C 1.37877 * 119.99906 * 299.99862 * 4 2 1 7 7 N 1.31512 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99752 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47341 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46983 * 120.00164 * 8 6 4 11 11 H 1.48504 * 109.47054 * 239.99654 * 8 6 4 12 12 N 1.46496 * 109.47113 * 239.99810 * 2 1 3 13 13 C 1.46497 * 120.00352 * 300.00291 * 12 2 1 14 14 C 1.34776 * 119.99846 * 119.99870 * 12 2 1 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 12 2 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 12 2 17 17 C 1.50706 * 109.47294 * 180.02562 * 16 14 12 18 18 C 1.38260 * 119.99900 * 269.73348 * 17 16 14 19 19 C 1.38211 * 119.99543 * 179.81072 * 18 17 16 20 20 C 1.38260 * 120.00364 * 0.39211 * 19 18 17 21 21 C 1.38219 * 119.99819 * 359.85936 * 20 19 18 22 22 C 1.50696 * 120.00072 * 179.97438 * 21 20 19 23 23 F 1.39899 * 109.47227 * 29.97281 * 22 21 20 24 24 F 1.39898 * 109.47255 * 149.98058 * 22 21 20 25 25 C 1.38213 * 119.99877 * 90.00166 * 17 16 14 26 26 H 1.09003 * 109.46701 * 59.99870 * 1 2 3 27 27 H 1.08997 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47114 * 300.00123 * 1 2 3 29 29 H 0.97003 * 119.99920 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46908 * 270.00137 * 13 12 2 31 31 H 1.09000 * 109.47065 * 29.99587 * 13 12 2 32 32 H 1.09002 * 109.47641 * 149.99946 * 13 12 2 33 33 H 1.09001 * 109.46665 * 60.00498 * 16 14 12 34 34 H 1.09000 * 109.47722 * 300.00830 * 16 14 12 35 35 H 1.07997 * 120.00247 * 359.97438 * 18 17 16 36 36 H 1.08004 * 120.00277 * 180.23027 * 19 18 17 37 37 H 1.08001 * 120.00531 * 179.83802 * 20 19 18 38 38 H 1.09001 * 109.46801 * 269.97777 * 22 21 20 39 39 H 1.08001 * 119.99504 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1472 -2.2865 3.6039 10 1 3.1472 -0.1858 4.8162 11 1 1.1676 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0866 1.1254 -1.8911 16 6 3.2961 -0.7462 -3.3134 17 6 4.1337 0.2009 -4.1336 18 6 3.5414 0.9769 -5.1126 19 6 4.3091 1.8483 -5.8621 20 6 5.6705 1.9381 -5.6382 21 6 6.2634 1.1585 -4.6630 22 6 7.7473 1.2559 -4.4194 23 9 8.1861 2.5488 -4.7246 24 9 8.0187 0.9762 -3.0758 25 6 5.4949 0.2896 -3.9107 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7087 1.1613 3.4844 30 1 2.4158 -2.7377 -0.9716 31 1 0.6905 -2.3002 -0.9846 32 1 1.6239 -2.2852 -2.5002 33 1 2.4485 -1.0891 -3.9068 34 1 3.9017 -1.6024 -3.0165 35 1 2.4786 0.9041 -5.2900 36 1 3.8459 2.4573 -6.6244 37 1 6.2707 2.6171 -6.2256 38 1 8.2673 0.5369 -5.0524 39 1 5.9580 -0.3195 -3.1485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344408321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:04 Heat of formation + Delta-G solvation = -133.753280 kcal Electronic energy + Delta-G solvation = -23754.587609 eV Core-core repulsion = 19910.943531 eV Total energy + Delta-G solvation = -3843.644078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.99304 -48.03133 -41.07295 -39.84381 -37.11548 -34.88167 -34.06144 -32.65608 -31.43990 -28.56649 -27.54051 -27.25951 -27.10112 -23.66926 -22.97509 -21.87789 -19.90445 -18.52837 -18.43109 -18.35769 -18.15033 -17.81158 -17.04275 -16.88062 -16.56269 -16.09009 -15.66645 -15.24375 -14.82075 -14.72952 -14.51596 -14.31600 -14.12057 -13.96402 -13.91878 -13.47500 -13.34751 -13.10138 -12.96812 -12.93470 -12.80027 -12.65178 -12.55912 -12.18438 -12.11843 -12.05632 -11.76610 -11.16714 -10.72361 -10.50256 -9.92377 -9.70629 -9.29863 -8.15250 -6.31857 0.17818 0.35945 1.39245 1.41355 1.52364 1.84793 2.30305 2.44964 2.73067 2.88234 3.12679 3.26100 3.51085 3.76528 3.94817 4.01938 4.03549 4.16056 4.30589 4.39172 4.51114 4.59643 4.66149 4.73083 4.82425 4.88713 4.92431 5.02984 5.06047 5.10379 5.36446 5.42098 5.46955 5.57024 5.63794 5.68403 5.95017 6.05011 6.16713 6.77069 6.87252 7.33385 7.51921 8.89098 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.003829 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.364291 B = 7310.888063 C = 8168.412726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.005 0.995 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.264 1.264 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.602 5.602 13 C 0.080 3.920 14 C 0.494 3.506 15 O -0.602 6.602 16 C -0.089 4.089 17 C -0.076 4.076 18 C -0.099 4.099 19 C -0.122 4.122 20 C -0.096 4.096 21 C -0.183 4.183 22 C 0.310 3.690 23 F -0.210 7.210 24 F -0.217 7.217 25 C -0.092 4.092 26 H 0.020 0.980 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.264 0.736 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.139 0.861 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.469 -6.150 -19.662 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.023 0.977 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.188 1.188 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.333 5.333 13 C -0.062 4.062 14 C 0.283 3.717 15 O -0.484 6.484 16 C -0.129 4.129 17 C -0.076 4.076 18 C -0.117 4.117 19 C -0.139 4.139 20 C -0.114 4.114 21 C -0.183 4.183 22 C 0.257 3.743 23 F -0.191 7.191 24 F -0.199 7.199 25 C -0.110 4.110 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.173 0.827 37 H 0.166 0.834 38 H 0.184 0.816 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.535 -5.448 -19.382 21.497 hybrid contribution 0.159 0.172 1.569 1.586 sum 7.694 -5.276 -17.813 20.108 Atomic orbital electron populations 1.21869 0.97096 1.00181 0.99887 1.18510 0.91668 0.92092 0.81973 0.97743 1.21622 1.31696 1.12948 0.91213 0.92159 1.25748 0.95122 0.95654 1.02083 1.70035 1.37464 1.23985 1.24301 0.85416 0.78241 0.78482 0.78924 1.18827 1.21351 1.19840 1.48250 1.49196 1.13519 1.22330 1.21862 1.01495 0.80176 1.02633 1.21309 0.78257 0.86773 0.85376 1.90654 1.59769 1.19852 1.78172 1.20759 1.01525 0.97917 0.92664 1.19520 0.93363 0.98433 0.96325 1.21432 1.00822 0.94827 0.94650 1.21434 0.93511 0.98570 1.00419 1.21170 0.95855 0.97527 0.96865 1.20559 0.95230 1.01583 1.00957 1.20780 0.92179 0.82003 0.79297 1.92961 1.90782 1.42506 1.92845 1.92981 1.94883 1.93608 1.38392 1.20871 0.93936 0.98519 0.97716 0.96063 0.93146 0.91616 0.92710 0.92704 0.91235 0.88054 0.84700 0.86031 0.84301 0.82701 0.83363 0.81591 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.95 71.99 0.64 -5.73 16 2 C 0.26 13.69 2.64 44.25 0.12 13.80 16 3 H 0.00 0.29 6.90 -2.39 -0.02 0.28 16 4 C -0.54 -29.53 8.37 25.60 0.21 -29.32 16 5 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.87 11.32 21.45 0.24 -53.63 16 8 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 9 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 N -0.60 -25.02 2.75 -826.80 -2.28 -27.30 16 13 C 0.08 2.37 9.48 127.77 1.21 3.58 16 14 C 0.49 19.97 7.67 87.66 0.67 20.64 16 15 O -0.60 -31.16 15.36 -3.04 -0.05 -31.21 16 16 C -0.09 -2.32 4.38 29.10 0.13 -2.20 16 17 C -0.08 -2.08 4.37 -19.86 -0.09 -2.16 16 18 C -0.10 -2.39 9.70 22.27 0.22 -2.18 16 19 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 20 C -0.10 -2.06 9.40 22.27 0.21 -1.85 16 21 C -0.18 -4.44 5.74 -19.87 -0.11 -4.55 16 22 C 0.31 6.48 5.65 71.23 0.40 6.88 16 23 F -0.21 -4.90 16.48 44.97 0.74 -4.16 16 24 F -0.22 -5.99 16.48 44.97 0.74 -5.25 16 25 C -0.09 -2.55 9.05 22.27 0.20 -2.35 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 2.18 6.66 -2.39 -0.02 2.16 16 28 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.10 6.43 -2.39 -0.02 2.09 16 32 H 0.10 1.98 6.44 -2.39 -0.02 1.96 16 33 H 0.14 2.48 7.34 -2.39 -0.02 2.46 16 34 H 0.12 2.59 8.05 -2.39 -0.02 2.57 16 35 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.15 2.47 7.60 -2.91 -0.02 2.45 16 38 H 0.17 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.12 3.40 7.61 -2.91 -0.02 3.38 16 Total: -1.00 -76.44 333.61 6.98 -69.46 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.06 Total: 12.96 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 4.49 Total: -6.58 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.03 Total: -80.93 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.21 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 1.48 Total: -9.41 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -76.44 6.98 -69.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344408321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.293 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds