Wall clock time and date at job start Tue Mar 31 2020 07:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46844 * 2 1 4 4 C 1.38159 * 125.60947 * 89.21468 * 3 2 1 5 5 C 1.46901 * 125.43920 * 359.97438 * 4 3 2 6 6 O 1.21705 * 119.99775 * 351.93281 * 5 4 3 7 7 N 1.34770 * 119.99943 * 171.93976 * 5 4 3 8 8 C 1.36802 * 119.99928 * 176.49961 * 7 5 4 9 9 H 1.08002 * 120.00576 * 0.18253 * 8 7 5 10 10 C 1.39063 * 120.00273 * 180.45483 * 8 7 5 11 11 N 1.31362 * 119.99697 * 34.61166 * 10 8 7 12 12 Si 1.86800 * 120.00580 * 214.60655 * 10 8 7 13 13 H 1.48495 * 109.46803 * 89.99977 * 12 10 8 14 14 H 1.48493 * 109.47287 * 210.00118 * 12 10 8 15 15 H 1.48500 * 109.47135 * 330.00139 * 12 10 8 16 16 C 1.46498 * 120.00053 * 356.49957 * 7 5 4 17 17 C 1.47202 * 109.46994 * 91.63444 * 16 7 5 18 18 N 6.49453 * 90.08010 * 28.75200 * 2 1 3 19 19 C 1.36010 * 109.11662 * 180.23868 * 4 3 2 20 20 C 1.41550 * 107.72363 * 359.61590 * 19 4 3 21 21 C 1.40125 * 133.36386 * 180.17531 * 20 19 4 22 22 C 1.36432 * 119.82691 * 180.28585 * 21 20 19 23 23 C 1.38936 * 120.61787 * 359.95814 * 22 21 20 24 24 C 1.37702 * 120.65064 * 359.97438 * 23 22 21 25 25 C 1.37530 * 125.60833 * 269.20682 * 3 2 1 26 26 H 1.08999 * 109.47219 * 65.02481 * 1 2 3 27 27 H 1.08996 * 109.47456 * 185.02441 * 1 2 3 28 28 H 1.09001 * 109.47166 * 305.02698 * 1 2 3 29 29 H 1.09003 * 109.46887 * 240.00540 * 2 1 3 30 30 H 1.08999 * 109.46909 * 120.00155 * 2 1 3 31 31 H 0.96999 * 120.00259 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.47234 * 211.63077 * 16 7 5 33 33 H 1.09002 * 109.47203 * 331.63822 * 16 7 5 34 34 H 1.08001 * 126.13337 * 179.72115 * 19 4 3 35 35 H 1.08002 * 120.08645 * 0.24443 * 21 20 19 36 36 H 1.08000 * 119.69586 * 179.97438 * 22 21 20 37 37 H 1.07998 * 119.67914 * 180.02562 * 23 22 21 38 38 H 1.07996 * 120.09674 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2719 2.1448 1.1231 5 6 2.0944 1.7015 2.5124 6 8 1.5567 0.6352 2.7469 7 7 2.5270 2.4757 3.5272 8 6 2.2981 2.0973 4.8218 9 1 1.7733 1.1768 5.0307 10 6 2.7361 2.9008 5.8689 11 7 2.7307 4.2081 5.7402 12 14 3.3319 2.1213 7.4584 13 1 4.7927 1.8697 7.3691 14 1 3.0560 3.0384 8.5933 15 1 2.6207 0.8360 7.6765 16 6 3.2423 3.7224 3.2440 17 6 2.2810 4.8351 3.1762 18 7 1.5391 5.6938 3.1240 19 6 2.7065 3.3744 0.7370 20 6 2.7401 3.3948 -0.6780 21 6 3.0999 4.3698 -1.6179 22 6 3.0202 4.0896 -2.9507 23 6 2.5858 2.8442 -3.3872 24 6 2.2280 1.8690 -2.4833 25 6 2.2998 2.1310 -1.1180 26 1 -0.3633 0.4339 -0.9316 27 1 -0.3634 -1.0237 0.0900 28 1 -0.3633 0.5898 0.8415 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.0359 4.7686 6.4706 32 1 3.9653 3.9147 4.0368 33 1 3.7634 3.6338 2.2907 34 1 2.9788 4.1884 1.3924 35 1 3.4388 5.3408 -1.2881 36 1 3.2977 4.8427 -3.6733 37 1 2.5289 2.6385 -4.4459 38 1 1.8911 0.9042 -2.8325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346775031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:46 Heat of formation + Delta-G solvation = 98.647375 kcal Electronic energy + Delta-G solvation = -23848.763572 eV Core-core repulsion = 20465.886329 eV Total energy + Delta-G solvation = -3382.877243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.36807 -38.77496 -36.79352 -35.96368 -34.46421 -33.76390 -32.07542 -30.85575 -29.06654 -28.62807 -27.37318 -25.41639 -23.49561 -22.81100 -21.29873 -20.42785 -19.29693 -18.19686 -16.88340 -16.45382 -16.26275 -16.00625 -15.04636 -14.87474 -14.42217 -14.29446 -14.07249 -13.89039 -13.44223 -13.36552 -13.32026 -12.70189 -12.43615 -12.19881 -11.98759 -11.77291 -11.71269 -11.46599 -11.39168 -11.32845 -10.93325 -10.89805 -10.71375 -10.58425 -10.47830 -10.16036 -9.45339 -9.30710 -8.78369 -8.34449 -7.86267 -7.36039 -6.82450 -4.03651 1.15008 1.88071 2.54818 2.93301 3.06779 3.15276 3.20378 3.57643 3.81336 3.99005 4.02820 4.19146 4.57024 4.72306 4.88690 4.96666 5.12501 5.19555 5.28015 5.34418 5.38928 5.56334 5.59451 5.65099 5.79150 5.87567 5.98174 6.01318 6.11914 6.19969 6.28241 6.40136 6.41913 6.66367 6.82645 6.99506 7.01490 7.25162 7.43474 7.57666 7.73210 8.09545 8.62794 8.79775 8.98152 9.56581 10.22673 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.005208 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.373874 B = 5374.851385 C = 6371.392158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.108 3.892 3 N -0.450 5.450 4 C 0.076 3.924 5 C 0.487 3.513 6 O -0.580 6.580 7 N -0.405 5.405 8 C -0.322 4.322 9 H 0.120 0.880 10 C 0.044 3.956 11 N -0.841 5.841 12 Si 0.921 3.079 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.178 3.822 17 C 0.242 3.758 18 N -0.458 5.458 19 C -0.213 4.213 20 C -0.103 4.103 21 C -0.070 4.070 22 C -0.154 4.154 23 C -0.108 4.108 24 C -0.126 4.126 25 C 0.096 3.904 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.279 0.721 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.168 0.832 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 -2.914 -12.094 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.013 4.013 3 N -0.131 5.131 4 C -0.035 4.035 5 C 0.278 3.722 6 O -0.466 6.466 7 N -0.122 5.122 8 C -0.449 4.449 9 H 0.138 0.862 10 C -0.165 4.165 11 N -0.477 5.477 12 Si 0.746 3.254 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.189 1.189 16 C 0.051 3.949 17 C -0.076 4.076 18 N -0.138 5.138 19 C -0.239 4.239 20 C -0.107 4.107 21 C -0.089 4.089 22 C -0.173 4.173 23 C -0.127 4.127 24 C -0.147 4.147 25 C -0.013 4.013 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.185 0.815 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.602 -2.364 -11.840 12.351 hybrid contribution 0.415 -0.404 0.928 1.094 sum 3.017 -2.768 -10.912 11.655 Atomic orbital electron populations 1.22059 0.94774 1.02647 1.02412 1.21840 0.95515 0.79705 1.04195 1.44091 1.53913 1.11968 1.03154 1.20354 1.03168 0.91452 0.88573 1.16657 0.86054 0.87240 0.82270 1.90633 1.48456 1.23506 1.84012 1.43440 1.46567 1.16271 1.05899 1.19798 1.38025 1.08000 0.79027 0.86226 1.25331 0.96421 0.94449 1.00256 1.70098 1.39038 1.03544 1.34996 0.86008 0.79756 0.79737 0.79894 1.19702 1.20973 1.18940 1.19973 0.91367 0.78794 1.04718 1.29003 0.94408 0.93882 0.90326 1.80923 1.09021 1.12021 1.11798 1.21930 1.10190 0.97841 0.93911 1.18248 1.05000 0.93837 0.93644 1.20357 0.98561 0.97824 0.92133 1.20502 1.04205 0.97224 0.95365 1.20705 1.00274 0.93312 0.98432 1.19964 1.05466 1.00025 0.89224 1.18373 1.02715 0.91849 0.88325 0.93080 0.91216 0.91195 0.90559 0.87283 0.90986 0.85373 0.86254 0.81540 0.86225 0.86528 0.86293 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.67 6.09 -4.04 -0.02 1.64 16 3 N -0.45 -8.04 2.82 -110.36 -0.31 -8.35 16 4 C 0.08 1.52 6.68 -82.31 -0.55 0.97 16 5 C 0.49 11.20 7.58 -12.76 -0.10 11.10 16 6 O -0.58 -14.42 14.22 5.18 0.07 -14.35 16 7 N -0.41 -9.38 2.58 -119.35 -0.31 -9.69 16 8 C -0.32 -8.01 9.37 -15.03 -0.14 -8.15 16 9 H 0.12 3.16 7.35 -52.49 -0.39 2.77 16 10 C 0.04 1.02 4.75 -17.45 -0.08 0.94 16 11 N -0.84 -20.00 9.61 55.50 0.53 -19.47 16 12 Si 0.92 18.42 29.67 -169.99 -5.04 13.38 16 13 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 16 C 0.18 3.56 4.71 -6.83 -0.03 3.53 16 17 C 0.24 5.33 11.68 -20.76 -0.24 5.09 16 18 N -0.46 -10.82 18.54 42.15 0.78 -10.04 16 19 C -0.21 -3.94 8.30 -39.12 -0.32 -4.27 16 20 C -0.10 -1.76 6.16 -106.93 -0.66 -2.42 16 21 C -0.07 -1.01 10.06 -39.52 -0.40 -1.41 16 22 C -0.15 -1.93 9.96 -39.97 -0.40 -2.33 16 23 C -0.11 -1.32 10.02 -39.52 -0.40 -1.71 16 24 C -0.13 -1.74 9.97 -39.42 -0.39 -2.13 16 25 C 0.10 1.61 6.81 -83.95 -0.57 1.03 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 29 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 30 H 0.11 1.87 6.49 -51.93 -0.34 1.53 16 31 H 0.28 6.30 8.31 -40.82 -0.34 5.96 16 32 H 0.13 2.55 6.17 -51.93 -0.32 2.23 16 33 H 0.12 2.03 4.37 -51.93 -0.23 1.80 16 34 H 0.17 2.98 3.16 -52.49 -0.17 2.81 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -29.12 321.70 -7.30 -36.43 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -3.95 Total: 7.35 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -3.93 Total: -0.10 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.70 Total: -47.55 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.07 Total: -14.35 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.04 Total: 13.38 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.12 -7.30 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346775031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.073 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds