Wall clock time and date at job start Tue Mar 31 2020 07:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47216 * 2 1 4 4 C 1.46899 * 110.99704 * 297.32853 * 3 2 1 5 5 C 1.50708 * 109.47110 * 292.72060 * 4 3 2 6 6 H 1.08000 * 119.99047 * 355.02832 * 5 4 3 7 7 C 1.37867 * 120.00166 * 175.02309 * 5 4 3 8 8 N 1.31515 * 120.00150 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00118 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47041 * 60.00260 * 9 7 5 11 11 H 1.48496 * 109.47502 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47161 * 300.00531 * 9 7 5 13 13 C 1.46904 * 110.99879 * 61.27500 * 3 2 1 14 14 C 1.52998 * 109.46856 * 66.05155 * 13 3 2 15 15 H 1.09007 * 109.47347 * 304.99821 * 14 13 3 16 16 O 1.42902 * 109.47325 * 64.99379 * 14 13 3 17 17 C 1.52997 * 109.47285 * 184.99803 * 14 13 3 18 18 C 1.50697 * 109.47474 * 174.99931 * 17 14 13 19 19 C 1.38265 * 119.99451 * 89.99710 * 18 17 14 20 20 C 1.38220 * 120.02817 * 180.02562 * 19 18 17 21 21 C 1.38238 * 120.01045 * 0.25550 * 20 19 18 22 22 C 1.38328 * 119.98812 * 359.46511 * 21 20 19 23 23 Cl 1.73597 * 120.01787 * 180.29532 * 22 21 20 24 24 C 1.38195 * 119.99396 * 269.97744 * 18 17 14 25 25 H 1.09006 * 109.46670 * 59.44083 * 1 2 3 26 26 H 1.08996 * 109.46985 * 179.44019 * 1 2 3 27 27 H 1.08994 * 109.47520 * 299.44329 * 1 2 3 28 28 H 1.08989 * 109.47418 * 239.99637 * 2 1 3 29 29 H 1.09001 * 109.46885 * 119.99170 * 2 1 3 30 30 H 1.09000 * 109.47758 * 52.72122 * 4 3 2 31 31 H 1.08999 * 109.47301 * 172.72218 * 4 3 2 32 32 H 0.97001 * 120.00139 * 179.97438 * 8 7 5 33 33 H 1.08993 * 109.47076 * 306.04753 * 13 3 2 34 34 H 1.09003 * 109.46692 * 186.04769 * 13 3 2 35 35 H 0.96706 * 113.99652 * 60.00195 * 16 14 13 36 36 H 1.08999 * 109.47319 * 54.99585 * 17 14 13 37 37 H 1.08998 * 109.46818 * 294.99884 * 17 14 13 38 38 H 1.08002 * 119.98807 * 359.97438 * 19 18 17 39 39 H 1.07991 * 119.99499 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.00176 * 179.74690 * 21 20 19 41 41 H 1.08004 * 120.00632 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6016 2.0912 -1.2184 5 6 2.3005 1.4915 -2.4114 6 1 3.0460 0.7230 -2.2704 7 6 1.9880 1.9240 -3.6827 8 7 1.0803 2.8602 -3.8542 9 14 2.8547 1.1813 -5.1613 10 1 2.5941 -0.2800 -5.2054 11 1 2.3433 1.8134 -6.4040 12 1 4.3161 1.4204 -5.0501 13 6 1.5738 2.1011 1.2027 14 6 2.2317 1.4825 2.4378 15 1 2.0204 0.4134 2.4650 16 8 3.6447 1.6873 2.3778 17 6 1.6733 2.1449 3.6988 18 6 2.2284 1.4536 4.9173 19 6 3.4080 1.8968 5.4863 20 6 3.9180 1.2629 6.6036 21 6 3.2517 0.1819 7.1498 22 6 2.0684 -0.2585 6.5845 23 17 1.2270 -1.6111 7.2743 24 6 1.5581 0.3769 5.4662 25 1 -0.3633 0.5225 -0.8850 26 1 -0.3633 -1.0276 -0.0100 27 1 -0.3634 0.5051 0.8949 28 1 1.8934 -0.5138 -0.8898 29 1 1.8934 -0.5137 0.8901 30 1 0.5231 1.9943 -1.3426 31 1 1.8645 3.1457 -1.1355 32 1 0.8607 3.1647 -4.7486 33 1 0.4902 2.0235 1.2909 34 1 1.8580 3.1507 1.1269 35 1 3.9064 2.6178 2.3511 36 1 0.5862 2.0659 3.6998 37 1 1.9611 3.1961 3.7148 38 1 3.9316 2.7383 5.0570 39 1 4.8396 1.6093 7.0474 40 1 3.6525 -0.3159 8.0204 41 1 0.6363 0.0311 5.0221 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347041740.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:49 Heat of formation + Delta-G solvation = -57.556806 kcal Electronic energy + Delta-G solvation = -21598.092636 eV Core-core repulsion = 18309.549365 eV Total energy + Delta-G solvation = -3288.543271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58905 -39.43050 -37.60735 -37.14619 -34.69462 -33.75419 -31.62012 -31.28369 -30.68436 -28.54375 -26.22205 -25.10331 -23.61306 -23.25423 -21.98644 -20.85524 -18.38296 -17.97493 -17.33818 -17.00072 -16.67356 -16.38954 -16.22684 -16.14928 -15.55184 -15.12274 -14.62623 -14.58275 -14.39067 -14.14812 -13.80968 -13.50704 -13.13637 -12.96550 -12.76199 -12.68159 -12.62698 -12.48059 -12.39147 -12.34895 -12.16610 -11.97902 -11.79264 -11.71069 -11.38304 -11.33814 -10.77676 -10.57704 -9.77946 -9.53877 -8.81259 -8.17509 -6.26468 0.25560 0.34576 1.17819 1.41005 1.43491 1.51381 2.41443 2.68861 3.14707 3.27098 3.68521 3.75329 3.92301 4.03860 4.18496 4.19826 4.27027 4.36962 4.40758 4.45917 4.51782 4.59279 4.63701 4.77237 4.79582 4.92901 4.98041 5.01911 5.08865 5.20082 5.24141 5.30414 5.39414 5.44160 5.51961 5.63462 5.69755 5.92031 6.11901 6.40687 6.72264 6.90473 7.04031 7.42926 8.92359 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.002938 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.639026 B = 9529.116924 C = 9936.200498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.060 3.940 3 N -0.535 5.535 4 C 0.205 3.795 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.020 3.980 14 C 0.132 3.868 15 H 0.085 0.915 16 O -0.560 6.560 17 C -0.107 4.107 18 C -0.066 4.066 19 C -0.106 4.106 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.047 4.047 23 Cl -0.079 7.079 24 C -0.124 4.124 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.076 0.924 30 H -0.021 1.021 31 H -0.003 1.003 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.380 0.620 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.155 0.845 40 H 0.145 0.855 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -2.957 23.293 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.068 4.068 3 N -0.258 5.258 4 C 0.079 3.921 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.195 1.195 13 C -0.109 4.109 14 C 0.073 3.927 15 H 0.103 0.897 16 O -0.366 6.366 17 C -0.145 4.145 18 C -0.066 4.066 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.074 4.074 23 Cl -0.050 7.050 24 C -0.143 4.143 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.095 0.905 30 H -0.003 1.003 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.229 0.771 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.163 0.837 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.149 -3.637 23.230 23.611 hybrid contribution -0.959 0.299 -1.143 1.521 sum 1.190 -3.339 22.088 22.370 Atomic orbital electron populations 1.22285 0.98321 1.02218 1.01020 1.21974 0.92862 0.90728 1.01234 1.62158 1.59468 1.02322 1.01876 1.19409 0.93007 0.92470 0.87233 1.21428 1.21599 1.21271 0.91456 0.92575 1.25821 0.95983 0.95634 1.01989 1.70063 1.33653 1.30638 1.23133 0.85536 0.78937 0.78706 0.78054 1.19469 1.20830 1.19517 1.22911 0.98022 0.98464 0.91494 1.21725 0.81043 0.99515 0.90443 0.89703 1.86582 1.21650 1.31707 1.96660 1.21306 1.01717 1.00457 0.90974 1.19785 0.95383 0.95313 0.96120 1.21421 0.94878 1.00654 0.95454 1.21430 1.00466 0.94799 0.95896 1.21290 0.93765 0.97935 1.01298 1.21049 0.96071 0.92760 0.97502 1.98361 1.77810 1.44621 1.84237 1.21087 1.01336 0.96402 0.95431 0.94858 0.91123 0.91824 0.92802 0.90533 1.00288 0.98461 0.92802 0.94140 0.91334 0.77131 0.89106 0.88527 0.83906 0.82716 0.83730 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 9.26 71.98 0.67 -5.59 16 2 C 0.06 2.31 5.68 86.30 0.49 2.80 16 3 N -0.54 -22.46 4.64 -900.77 -4.18 -26.64 16 4 C 0.20 10.73 4.54 85.56 0.39 11.12 16 5 C -0.52 -29.59 8.39 25.60 0.21 -29.37 16 6 H 0.06 3.20 7.39 -2.91 -0.02 3.18 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -56.09 13.29 21.44 0.28 -55.81 16 9 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 13 C 0.02 0.63 4.37 86.30 0.38 1.01 16 14 C 0.13 3.39 2.91 30.59 0.09 3.48 16 15 H 0.09 2.38 6.31 -2.38 -0.02 2.37 16 16 O -0.56 -15.42 12.78 -148.98 -1.90 -17.32 16 17 C -0.11 -2.00 5.03 29.85 0.15 -1.85 16 18 C -0.07 -1.27 4.97 -19.87 -0.10 -1.37 16 19 C -0.11 -1.82 9.40 22.27 0.21 -1.61 16 20 C -0.11 -1.67 10.05 22.27 0.22 -1.45 16 21 C -0.12 -2.12 9.83 22.29 0.22 -1.90 16 22 C -0.05 -0.94 6.32 22.32 0.14 -0.80 16 23 Cl -0.08 -1.52 28.96 -2.72 -0.08 -1.60 16 24 C -0.12 -2.53 9.49 22.29 0.21 -2.31 16 25 H 0.03 1.39 6.29 -2.38 -0.01 1.37 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 1.93 6.33 -2.39 -0.02 1.92 16 28 H 0.05 2.34 6.98 -2.39 -0.02 2.32 16 29 H 0.08 2.58 6.31 -2.39 -0.02 2.56 16 30 H -0.02 -1.15 6.02 -2.39 -0.01 -1.16 16 31 H 0.00 -0.15 7.91 -2.39 -0.02 -0.17 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.04 1.26 6.05 -2.39 -0.01 1.25 16 34 H 0.07 2.19 7.92 -2.39 -0.02 2.17 16 35 H 0.38 8.02 9.05 -74.05 -0.67 7.35 16 36 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 37 H 0.10 1.50 8.09 -2.39 -0.02 1.48 16 38 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.16 1.54 8.06 -2.92 -0.02 1.52 16 40 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -66.79 347.62 0.26 -66.53 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.36 Total: 15.28 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 3.74 Total: -27.20 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -3.90 Total: -82.45 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -1.90 Total: -17.32 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -66.79 0.26 -66.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347041740.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.973 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds