Wall clock time and date at job start Tue Mar 31 2020 07:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46907 * 109.46777 * 2 1 4 4 C 1.46900 * 110.99785 * 287.99911 * 3 2 1 5 5 C 1.50701 * 109.47032 * 160.36624 * 4 3 2 6 6 H 1.08002 * 119.99603 * 4.89965 * 5 4 3 7 7 C 1.37882 * 120.00367 * 184.90408 * 5 4 3 8 8 N 1.31512 * 120.00101 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99476 * 359.97438 * 7 5 4 10 10 H 1.48510 * 109.47038 * 90.00789 * 9 7 5 11 11 H 1.48501 * 109.46905 * 209.99983 * 9 7 5 12 12 H 1.48491 * 109.47471 * 330.00430 * 9 7 5 13 13 C 1.46895 * 110.99851 * 164.05157 * 3 2 1 14 14 C 1.53008 * 109.46988 * 293.94895 * 13 3 2 15 15 H 1.08999 * 109.46377 * 60.00308 * 14 13 3 16 16 O 1.42895 * 109.47010 * 300.00442 * 14 13 3 17 17 C 1.52998 * 109.46868 * 179.97438 * 14 13 3 18 18 C 1.50702 * 109.46787 * 185.00179 * 17 14 13 19 19 C 1.38260 * 119.99292 * 90.00320 * 18 17 14 20 20 C 1.38226 * 120.02789 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.01107 * 0.02562 * 20 19 18 22 22 C 1.38327 * 119.98454 * 359.97438 * 21 20 19 23 23 Cl 1.73610 * 120.01034 * 179.97438 * 22 21 20 24 24 C 1.38197 * 119.99334 * 269.73050 * 18 17 14 25 25 H 1.09006 * 109.47119 * 179.45913 * 1 2 3 26 26 H 1.09003 * 109.47272 * 299.45341 * 1 2 3 27 27 H 1.09002 * 109.47699 * 59.45997 * 1 2 3 28 28 H 1.09000 * 109.46903 * 240.00509 * 2 1 3 29 29 H 1.08991 * 109.47766 * 120.00291 * 2 1 3 30 30 H 1.09000 * 109.47640 * 280.36175 * 4 3 2 31 31 H 1.09003 * 109.47240 * 40.37001 * 4 3 2 32 32 H 0.97000 * 119.99779 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47310 * 173.95775 * 13 3 2 34 34 H 1.08997 * 109.47712 * 53.95269 * 13 3 2 35 35 H 0.96694 * 113.99984 * 299.99165 * 16 14 13 36 36 H 1.09001 * 109.47542 * 305.00076 * 17 14 13 37 37 H 1.08996 * 109.47113 * 65.01023 * 17 14 13 38 38 H 1.08003 * 119.99215 * 0.02562 * 19 18 17 39 39 H 1.07996 * 119.99300 * 180.02562 * 20 19 18 40 40 H 1.07995 * 120.00262 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.00607 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.7954 2.0226 -1.3043 5 6 1.8468 3.5205 -1.1468 6 1 2.1058 3.9544 -0.1923 7 6 1.5630 4.3369 -2.2210 8 7 1.6083 5.6440 -2.0836 9 14 1.1155 3.5862 -3.8719 10 1 -0.3554 3.3951 -3.9464 11 1 1.5525 4.4938 -4.9631 12 1 1.7933 2.2732 -4.0188 13 6 3.4382 1.4419 0.3768 14 6 3.5972 0.9997 1.8330 15 1 3.2323 -0.0213 1.9444 16 8 2.8441 1.8699 2.6800 17 6 5.0749 1.0583 2.2252 18 6 5.2473 0.5072 3.6172 19 6 5.4904 -0.8413 3.8015 20 6 5.6491 -1.3475 5.0779 21 6 5.5643 -0.5056 6.1710 22 6 5.3211 0.8437 5.9872 23 17 5.2139 1.9015 7.3597 24 6 5.1679 1.3508 4.7089 25 1 -0.3634 -1.0277 -0.0097 26 1 -0.3634 0.5053 0.8949 27 1 -0.3634 0.5222 -0.8851 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8898 30 1 2.5696 1.7041 -2.0024 31 1 0.8177 1.7310 -1.6881 32 1 1.4090 6.2184 -2.8394 33 1 3.8031 2.4629 0.2654 34 1 4.0127 0.7782 -0.2693 35 1 3.1151 2.7968 2.6321 36 1 5.6609 0.4640 1.5240 37 1 5.4170 2.0929 2.1992 38 1 5.5571 -1.4995 2.9478 39 1 5.8394 -2.4008 5.2212 40 1 5.6880 -0.9012 7.1683 41 1 4.9820 2.4048 4.5646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347041742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:53 Heat of formation + Delta-G solvation = -36.059708 kcal Electronic energy + Delta-G solvation = -21643.624861 eV Core-core repulsion = 18356.013774 eV Total energy + Delta-G solvation = -3287.611087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71104 -38.03463 -36.61212 -35.83239 -32.81735 -32.55067 -30.91028 -30.55615 -29.37898 -27.36205 -24.90579 -22.82856 -22.52455 -21.98272 -20.96326 -19.68202 -17.19749 -16.85123 -16.09818 -16.00285 -15.44213 -15.11662 -14.94751 -14.56875 -13.93120 -13.89086 -13.65181 -13.47822 -13.29718 -13.16410 -12.49400 -12.08419 -11.94197 -11.71705 -11.63609 -11.53504 -11.42979 -11.32639 -11.02405 -10.93243 -10.86247 -10.66556 -10.45888 -10.11082 -9.88847 -9.54717 -9.29102 -8.97363 -8.71865 -8.55822 -7.31997 -6.05573 -4.01809 1.01900 1.14461 2.00615 3.26929 3.34688 3.36188 3.47396 4.39497 4.42073 4.60960 4.68844 4.84845 4.92256 5.08484 5.11929 5.27078 5.27764 5.30782 5.47826 5.49590 5.63786 5.70276 5.77328 5.84555 5.90571 6.00613 6.08580 6.15539 6.19788 6.21352 6.38415 6.46646 6.53080 6.66691 6.74473 6.84393 6.90840 7.63604 7.91982 7.99521 8.15951 8.66854 9.03825 9.56934 11.07706 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.003275 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.045381 B = 8546.532923 C = 9152.080010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.514 5.514 4 C 0.160 3.840 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.031 3.969 14 C 0.119 3.881 15 H 0.091 0.909 16 O -0.543 6.543 17 C -0.119 4.119 18 C -0.053 4.053 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.121 4.121 22 C -0.032 4.032 23 Cl -0.076 7.076 24 C -0.094 4.094 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.018 0.982 29 H 0.062 0.938 30 H -0.015 1.015 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.089 0.911 34 H 0.026 0.974 35 H 0.373 0.627 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.214 -13.832 13.340 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.238 5.238 4 C 0.034 3.966 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.098 4.098 14 C 0.059 3.941 15 H 0.109 0.891 16 O -0.347 6.347 17 C -0.157 4.157 18 C -0.053 4.053 19 C -0.135 4.135 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.058 4.058 23 Cl -0.047 7.047 24 C -0.113 4.113 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.003 0.997 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.220 0.780 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.597 -13.856 13.851 21.395 hybrid contribution 0.481 -0.161 -1.668 1.743 sum 9.078 -14.017 12.183 20.671 Atomic orbital electron populations 1.21738 0.95442 0.99958 1.02980 1.22073 0.96249 0.90851 0.98899 1.61892 1.15419 1.14075 1.32453 1.20229 0.95264 0.96039 0.85034 1.21024 1.46373 0.88191 0.98600 0.90184 1.24894 0.95274 0.94714 0.98486 1.69888 1.49917 1.02817 1.31383 0.86906 0.79247 0.79385 0.84455 1.20160 1.21239 1.19450 1.22718 0.90395 1.02364 0.94316 1.21896 0.87840 0.94875 0.89497 0.89123 1.86562 1.61700 1.21341 1.65126 1.21447 0.99081 1.02531 0.92613 1.19747 0.97189 0.93260 0.95106 1.21162 1.00002 0.94935 0.97437 1.21050 0.99910 0.99645 0.92033 1.20992 1.01607 0.91544 0.99862 1.20921 1.04922 0.91460 0.88508 1.98369 1.96707 1.66111 1.43501 1.20956 0.99455 1.00859 0.90016 0.93609 0.91868 0.92515 0.96394 0.91967 0.99728 0.95539 0.92719 0.89270 0.95621 0.77989 0.89865 0.89954 0.85583 0.85326 0.85323 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.98 37.15 0.37 -2.00 16 2 C 0.05 0.82 5.55 -3.82 -0.02 0.80 16 3 N -0.51 -10.39 4.25 -236.07 -1.00 -11.39 16 4 C 0.16 3.82 3.65 -4.98 -0.02 3.80 16 5 C -0.50 -13.99 9.17 -34.44 -0.32 -14.31 16 6 H 0.08 2.40 7.89 -52.49 -0.41 1.99 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 9 Si 0.87 21.35 27.37 -169.99 -4.65 16.69 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.37 6.68 56.52 0.38 -5.99 16 13 C 0.03 0.53 4.45 -3.82 -0.02 0.51 16 14 C 0.12 1.66 2.86 -26.73 -0.08 1.59 16 15 H 0.09 1.28 6.28 -51.93 -0.33 0.95 16 16 O -0.54 -8.60 12.71 -35.23 -0.45 -9.05 16 17 C -0.12 -1.32 5.03 -27.88 -0.14 -1.46 16 18 C -0.05 -0.59 4.96 -104.63 -0.52 -1.11 16 19 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 20 C -0.11 -0.98 10.05 -39.59 -0.40 -1.38 16 21 C -0.12 -1.19 9.83 -39.55 -0.39 -1.58 16 22 C -0.03 -0.36 6.32 -39.50 -0.25 -0.60 16 23 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 24 C -0.09 -1.09 9.20 -39.55 -0.36 -1.46 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.02 6.52 -51.93 -0.34 0.68 16 28 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 29 H 0.06 0.95 5.94 -51.93 -0.31 0.65 16 30 H -0.01 -0.36 7.40 -51.93 -0.38 -0.74 16 31 H 0.03 0.64 5.40 -51.93 -0.28 0.36 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.09 1.69 7.32 -51.93 -0.38 1.31 16 34 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 35 H 0.37 5.25 9.05 45.56 0.41 5.66 16 36 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -31.16 349.33 -9.58 -40.74 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.39 Total: 3.49 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.62 Total: -16.93 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.23 Total: -37.88 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.45 Total: -9.05 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.65 Total: 16.69 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.16 -9.58 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347041742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.677 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds