Wall clock time and date at job start Tue Mar 31 2020 07:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46907 * 109.46777 * 2 1 4 4 C 1.46900 * 110.99785 * 287.99911 * 3 2 1 5 5 C 1.50701 * 109.47032 * 160.36624 * 4 3 2 6 6 H 1.08002 * 119.99603 * 4.89965 * 5 4 3 7 7 C 1.37882 * 120.00367 * 184.90408 * 5 4 3 8 8 N 1.31512 * 120.00101 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99476 * 359.97438 * 7 5 4 10 10 H 1.48510 * 109.47038 * 90.00789 * 9 7 5 11 11 H 1.48501 * 109.46905 * 209.99983 * 9 7 5 12 12 H 1.48491 * 109.47471 * 330.00430 * 9 7 5 13 13 C 1.46895 * 110.99851 * 164.05157 * 3 2 1 14 14 C 1.53008 * 109.46988 * 293.94895 * 13 3 2 15 15 H 1.08999 * 109.46377 * 60.00308 * 14 13 3 16 16 O 1.42895 * 109.47010 * 300.00442 * 14 13 3 17 17 C 1.52998 * 109.46868 * 179.97438 * 14 13 3 18 18 C 1.50702 * 109.46787 * 185.00179 * 17 14 13 19 19 C 1.38260 * 119.99292 * 90.00320 * 18 17 14 20 20 C 1.38226 * 120.02789 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.01107 * 0.02562 * 20 19 18 22 22 C 1.38327 * 119.98454 * 359.97438 * 21 20 19 23 23 Cl 1.73610 * 120.01034 * 179.97438 * 22 21 20 24 24 C 1.38197 * 119.99334 * 269.73050 * 18 17 14 25 25 H 1.09006 * 109.47119 * 179.45913 * 1 2 3 26 26 H 1.09003 * 109.47272 * 299.45341 * 1 2 3 27 27 H 1.09002 * 109.47699 * 59.45997 * 1 2 3 28 28 H 1.09000 * 109.46903 * 240.00509 * 2 1 3 29 29 H 1.08991 * 109.47766 * 120.00291 * 2 1 3 30 30 H 1.09000 * 109.47640 * 280.36175 * 4 3 2 31 31 H 1.09003 * 109.47240 * 40.37001 * 4 3 2 32 32 H 0.97000 * 119.99779 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47310 * 173.95775 * 13 3 2 34 34 H 1.08997 * 109.47712 * 53.95269 * 13 3 2 35 35 H 0.96694 * 113.99984 * 299.99165 * 16 14 13 36 36 H 1.09001 * 109.47542 * 305.00076 * 17 14 13 37 37 H 1.08996 * 109.47113 * 65.01023 * 17 14 13 38 38 H 1.08003 * 119.99215 * 0.02562 * 19 18 17 39 39 H 1.07996 * 119.99300 * 180.02562 * 20 19 18 40 40 H 1.07995 * 120.00262 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.00607 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.7954 2.0226 -1.3043 5 6 1.8468 3.5205 -1.1468 6 1 2.1058 3.9544 -0.1923 7 6 1.5630 4.3369 -2.2210 8 7 1.6083 5.6440 -2.0836 9 14 1.1155 3.5862 -3.8719 10 1 -0.3554 3.3951 -3.9464 11 1 1.5525 4.4938 -4.9631 12 1 1.7933 2.2732 -4.0188 13 6 3.4382 1.4419 0.3768 14 6 3.5972 0.9997 1.8330 15 1 3.2323 -0.0213 1.9444 16 8 2.8441 1.8699 2.6800 17 6 5.0749 1.0583 2.2252 18 6 5.2473 0.5072 3.6172 19 6 5.4904 -0.8413 3.8015 20 6 5.6491 -1.3475 5.0779 21 6 5.5643 -0.5056 6.1710 22 6 5.3211 0.8437 5.9872 23 17 5.2139 1.9015 7.3597 24 6 5.1679 1.3508 4.7089 25 1 -0.3634 -1.0277 -0.0097 26 1 -0.3634 0.5053 0.8949 27 1 -0.3634 0.5222 -0.8851 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8898 30 1 2.5696 1.7041 -2.0024 31 1 0.8177 1.7310 -1.6881 32 1 1.4090 6.2184 -2.8394 33 1 3.8031 2.4629 0.2654 34 1 4.0127 0.7782 -0.2693 35 1 3.1151 2.7968 2.6321 36 1 5.6609 0.4640 1.5240 37 1 5.4170 2.0929 2.1992 38 1 5.5571 -1.4995 2.9478 39 1 5.8394 -2.4008 5.2212 40 1 5.6880 -0.9012 7.1683 41 1 4.9820 2.4048 4.5646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347041742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:52 Heat of formation + Delta-G solvation = -56.442713 kcal Electronic energy + Delta-G solvation = -21644.508734 eV Core-core repulsion = 18356.013774 eV Total energy + Delta-G solvation = -3288.494960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56879 -39.30925 -37.54455 -37.10044 -34.67472 -33.74921 -31.94650 -31.64433 -30.87305 -28.81620 -26.23636 -24.13911 -23.58302 -23.23312 -21.96684 -21.21116 -18.98125 -18.03825 -17.22713 -17.00663 -16.70145 -16.28331 -16.07132 -15.98431 -15.57696 -15.06486 -14.81493 -14.65903 -14.48281 -14.26051 -14.10680 -13.52473 -13.25752 -12.99837 -12.83291 -12.63372 -12.45752 -12.43206 -12.42834 -12.19980 -12.14589 -11.93927 -11.88876 -11.75745 -11.47743 -11.26821 -10.83347 -10.71632 -9.77932 -9.54707 -8.88563 -8.25757 -6.27207 0.23388 0.36622 1.19163 1.34781 1.34972 1.45641 2.35232 2.67726 3.05549 3.17864 3.64954 3.74380 3.92882 4.02903 4.13867 4.18622 4.29173 4.37056 4.38558 4.43550 4.49010 4.59090 4.71036 4.74353 4.82305 4.88047 4.94229 4.97548 5.05259 5.08408 5.20615 5.24997 5.31556 5.39657 5.42027 5.61809 5.62355 5.91828 6.05556 6.46277 6.70941 6.78451 6.94965 7.35919 8.90883 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.003275 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.045381 B = 8546.532923 C = 9152.080010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 N -0.535 5.535 4 C 0.171 3.829 5 C -0.507 4.507 6 H 0.040 0.960 7 C 0.008 3.992 8 N -0.948 5.948 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.252 1.252 13 C 0.032 3.968 14 C 0.130 3.870 15 H 0.098 0.902 16 O -0.561 6.561 17 C -0.109 4.109 18 C -0.065 4.065 19 C -0.119 4.119 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.048 4.048 23 Cl -0.081 7.081 24 C -0.111 4.111 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.028 0.972 29 H 0.084 0.916 30 H -0.016 1.016 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.376 0.624 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.637 -17.121 12.950 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 N -0.259 5.259 4 C 0.044 3.956 5 C -0.545 4.545 6 H 0.058 0.942 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.766 3.234 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.176 1.176 13 C -0.096 4.096 14 C 0.071 3.929 15 H 0.116 0.884 16 O -0.366 6.366 17 C -0.147 4.147 18 C -0.065 4.065 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.143 4.143 22 C -0.074 4.074 23 Cl -0.052 7.052 24 C -0.130 4.130 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.002 0.998 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.224 0.776 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.166 0.834 39 H 0.177 0.823 40 H 0.164 0.836 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.029 -17.166 13.479 23.620 hybrid contribution 0.378 0.858 -1.426 1.707 sum 9.407 -16.308 12.053 22.354 Atomic orbital electron populations 1.21735 0.95127 1.01694 1.01349 1.22184 0.96537 0.89023 1.00405 1.61785 1.17530 1.16322 1.30295 1.19955 0.95084 0.93515 0.87025 1.21267 1.45502 0.90752 0.96996 0.94205 1.25794 0.95316 0.95023 1.02790 1.70045 1.51604 1.04518 1.32788 0.85796 0.79325 0.79127 0.79165 1.19330 1.20813 1.17627 1.22741 0.88889 1.01184 0.96791 1.21842 0.89624 0.94421 0.87036 0.88422 1.86524 1.62677 1.21898 1.65541 1.21312 0.97048 1.02938 0.93365 1.19766 0.98222 0.94029 0.94518 1.21475 0.99039 0.94496 0.98697 1.21428 0.98521 1.01025 0.91325 1.21301 1.00791 0.90981 1.01214 1.21093 1.05869 0.92210 0.88253 1.98362 1.96788 1.66450 1.43620 1.21026 1.00408 1.00862 0.90725 0.90205 0.93209 0.94373 0.95355 0.89754 0.99825 0.95505 0.92594 0.92161 0.94088 0.77618 0.87977 0.90289 0.83410 0.82286 0.83622 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.98 71.98 0.72 -3.66 16 2 C 0.05 1.47 5.55 86.30 0.48 1.95 16 3 N -0.54 -21.29 4.25 -900.80 -3.83 -25.12 16 4 C 0.17 8.09 3.65 85.56 0.31 8.40 16 5 C -0.51 -28.95 9.17 25.60 0.23 -28.72 16 6 H 0.04 2.53 7.89 -2.91 -0.02 2.50 16 7 C 0.01 0.45 5.47 84.66 0.46 0.91 16 8 N -0.95 -59.10 13.96 21.45 0.30 -58.81 16 9 Si 0.94 43.97 27.37 68.60 1.88 45.85 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.25 -10.99 6.68 99.48 0.66 -10.33 16 13 C 0.03 1.09 4.45 86.31 0.38 1.48 16 14 C 0.13 3.50 2.86 30.60 0.09 3.59 16 15 H 0.10 2.51 6.28 -2.39 -0.01 2.49 16 16 O -0.56 -17.95 12.71 -148.98 -1.89 -19.85 16 17 C -0.11 -2.28 5.03 29.85 0.15 -2.13 16 18 C -0.06 -1.35 4.96 -19.87 -0.10 -1.45 16 19 C -0.12 -2.01 9.70 22.27 0.22 -1.79 16 20 C -0.11 -1.58 10.05 22.27 0.22 -1.35 16 21 C -0.12 -2.19 9.83 22.29 0.22 -1.97 16 22 C -0.05 -1.04 6.32 22.32 0.14 -0.90 16 23 Cl -0.08 -1.74 28.96 -2.72 -0.08 -1.82 16 24 C -0.11 -2.56 9.20 22.29 0.21 -2.35 16 25 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.30 6.52 -2.39 -0.02 1.29 16 28 H 0.03 0.86 8.05 -2.39 -0.02 0.84 16 29 H 0.08 2.32 5.94 -2.39 -0.01 2.30 16 30 H -0.02 -0.75 7.40 -2.39 -0.02 -0.76 16 31 H 0.03 1.27 5.40 -2.39 -0.01 1.26 16 32 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.06 2.36 7.32 -2.39 -0.02 2.34 16 34 H 0.04 1.25 8.12 -2.39 -0.02 1.23 16 35 H 0.38 11.23 9.05 -74.06 -0.67 10.56 16 36 H 0.10 1.75 8.09 -2.39 -0.02 1.74 16 37 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 38 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -68.45 349.33 0.43 -68.02 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.31 Total: 19.73 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.74 Total: -28.01 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -3.53 Total: -83.92 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -1.89 Total: -19.85 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -68.45 0.43 -68.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347041742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.578 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds